Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3264

Experiment: KB with Chloramphenicol 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3263 and Psyr_3264 are separated by 47 nucleotidesPsyr_3264 and Psyr_3265 are separated by 69 nucleotides Psyr_3263: Psyr_3263 - monosaccharide ABC transporter membrane protein, CUT2 family, at 3,907,349 to 3,908,374 _3263 Psyr_3264: Psyr_3264 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 3,908,422 to 3,909,999 _3264 Psyr_3265: Psyr_3265 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 3,910,069 to 3,911,004 _3265 Position (kb) 3908 3909 3910Strain fitness (log2 ratio) -2 -1 0 1 2at 3907.434 kb on + strandat 3907.434 kb on + strandat 3907.434 kb on + strandat 3907.435 kb on - strandat 3907.435 kb on - strandat 3907.435 kb on - strandat 3907.435 kb on - strandat 3907.702 kb on + strand, within Psyr_3263at 3907.702 kb on + strand, within Psyr_3263at 3907.702 kb on + strandat 3907.702 kb on + strand, within Psyr_3263at 3907.703 kb on - strand, within Psyr_3263at 3907.703 kb on - strand, within Psyr_3263at 3907.734 kb on + strand, within Psyr_3263at 3907.734 kb on + strand, within Psyr_3263at 3907.734 kb on + strand, within Psyr_3263at 3907.735 kb on - strand, within Psyr_3263at 3907.735 kb on - strand, within Psyr_3263at 3907.735 kb on - strand, within Psyr_3263at 3907.735 kb on - strand, within Psyr_3263at 3907.740 kb on + strandat 3907.740 kb on + strand, within Psyr_3263at 3907.740 kb on + strand, within Psyr_3263at 3907.741 kb on - strand, within Psyr_3263at 3907.741 kb on - strand, within Psyr_3263at 3907.741 kb on - strand, within Psyr_3263at 3907.741 kb on - strand, within Psyr_3263at 3907.741 kb on - strand, within Psyr_3263at 3907.759 kb on - strand, within Psyr_3263at 3907.836 kb on + strand, within Psyr_3263at 3907.837 kb on - strand, within Psyr_3263at 3907.875 kb on + strand, within Psyr_3263at 3907.944 kb on - strand, within Psyr_3263at 3907.945 kb on + strand, within Psyr_3263at 3907.945 kb on + strand, within Psyr_3263at 3907.945 kb on + strand, within Psyr_3263at 3907.945 kb on + strand, within Psyr_3263at 3907.945 kb on + strand, within Psyr_3263at 3907.945 kb on + strand, within Psyr_3263at 3907.946 kb on - strand, within Psyr_3263at 3908.201 kb on + strand, within Psyr_3263at 3908.612 kb on + strand, within Psyr_3264at 3908.668 kb on + strand, within Psyr_3264at 3908.669 kb on - strand, within Psyr_3264at 3908.669 kb on - strand, within Psyr_3264at 3908.669 kb on - strand, within Psyr_3264at 3908.837 kb on + strand, within Psyr_3264at 3908.837 kb on + strand, within Psyr_3264at 3908.837 kb on + strand, within Psyr_3264at 3908.838 kb on - strand, within Psyr_3264at 3908.838 kb on - strand, within Psyr_3264at 3908.838 kb on - strandat 3909.260 kb on + strand, within Psyr_3264at 3909.261 kb on - strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.444 kb on - strand, within Psyr_3264at 3909.756 kb on - strand, within Psyr_3264at 3909.756 kb on - strand, within Psyr_3264at 3909.756 kb on - strand, within Psyr_3264at 3910.005 kb on + strandat 3910.005 kb on + strandat 3910.006 kb on - strandat 3910.006 kb on - strandat 3910.006 kb on - strandat 3910.006 kb on - strandat 3910.006 kb on - strandat 3910.070 kb on + strandat 3910.071 kb on - strandat 3910.421 kb on + strand, within Psyr_3265at 3910.421 kb on + strand, within Psyr_3265at 3910.421 kb on + strand, within Psyr_3265at 3910.421 kb on + strand, within Psyr_3265at 3910.422 kb on - strand, within Psyr_3265at 3910.422 kb on - strand, within Psyr_3265at 3910.444 kb on + strand, within Psyr_3265at 3910.444 kb on + strand, within Psyr_3265at 3910.444 kb on + strand, within Psyr_3265at 3910.444 kb on + strand, within Psyr_3265at 3910.444 kb on + strand, within Psyr_3265at 3910.444 kb on + strand, within Psyr_3265at 3910.445 kb on - strand, within Psyr_3265at 3910.460 kb on + strand, within Psyr_3265at 3910.571 kb on + strand, within Psyr_3265at 3910.571 kb on + strand, within Psyr_3265at 3910.571 kb on + strand, within Psyr_3265at 3910.572 kb on - strand, within Psyr_3265at 3910.572 kb on - strand, within Psyr_3265at 3910.664 kb on + strand, within Psyr_3265at 3910.664 kb on + strand, within Psyr_3265at 3910.664 kb on + strand, within Psyr_3265at 3910.665 kb on - strand, within Psyr_3265at 3910.869 kb on + strand, within Psyr_3265at 3910.869 kb on + strand, within Psyr_3265at 3910.883 kb on + strand, within Psyr_3265at 3910.883 kb on + strand, within Psyr_3265at 3910.883 kb on + strand, within Psyr_3265at 3910.932 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml
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3,907,434 + -0.6
3,907,434 + +1.7
3,907,434 + +0.5
3,907,435 - +1.3
3,907,435 - +0.2
3,907,435 - -0.4
3,907,435 - -0.8
3,907,702 + Psyr_3263 0.34 +0.5
3,907,702 + Psyr_3263 0.34 +0.2
3,907,702 + -1.6
3,907,702 + Psyr_3263 0.34 -1.9
3,907,703 - Psyr_3263 0.35 +1.3
3,907,703 - Psyr_3263 0.35 +0.2
3,907,734 + Psyr_3263 0.38 +0.3
3,907,734 + Psyr_3263 0.38 -0.8
3,907,734 + Psyr_3263 0.38 +0.7
3,907,735 - Psyr_3263 0.38 -0.9
3,907,735 - Psyr_3263 0.38 -0.8
3,907,735 - Psyr_3263 0.38 -1.0
3,907,735 - Psyr_3263 0.38 +0.1
3,907,740 + +1.7
3,907,740 + Psyr_3263 0.38 +0.3
3,907,740 + Psyr_3263 0.38 +0.1
3,907,741 - Psyr_3263 0.38 +2.5
3,907,741 - Psyr_3263 0.38 +0.5
3,907,741 - Psyr_3263 0.38 +0.7
3,907,741 - Psyr_3263 0.38 +1.2
3,907,741 - Psyr_3263 0.38 -0.6
3,907,759 - Psyr_3263 0.40 +0.4
3,907,836 + Psyr_3263 0.47 -1.6
3,907,837 - Psyr_3263 0.48 +0.7
3,907,875 + Psyr_3263 0.51 +0.2
3,907,944 - Psyr_3263 0.58 +0.2
3,907,945 + Psyr_3263 0.58 -0.9
3,907,945 + Psyr_3263 0.58 -0.0
3,907,945 + Psyr_3263 0.58 -0.6
3,907,945 + Psyr_3263 0.58 -0.9
3,907,945 + Psyr_3263 0.58 -0.4
3,907,945 + Psyr_3263 0.58 +0.7
3,907,946 - Psyr_3263 0.58 +0.5
3,908,201 + Psyr_3263 0.83 -1.9
3,908,612 + Psyr_3264 0.12 -0.5
3,908,668 + Psyr_3264 0.16 +1.3
3,908,669 - Psyr_3264 0.16 -0.6
3,908,669 - Psyr_3264 0.16 +0.9
3,908,669 - Psyr_3264 0.16 -1.0
3,908,837 + Psyr_3264 0.26 -0.3
3,908,837 + Psyr_3264 0.26 +0.9
3,908,837 + Psyr_3264 0.26 -0.3
3,908,838 - Psyr_3264 0.26 +0.7
3,908,838 - Psyr_3264 0.26 -0.8
3,908,838 - -2.1
3,909,260 + Psyr_3264 0.53 +0.5
3,909,261 - Psyr_3264 0.53 +0.0
3,909,329 + Psyr_3264 0.57 +0.8
3,909,329 + Psyr_3264 0.57 +1.3
3,909,329 + Psyr_3264 0.57 +0.8
3,909,329 + Psyr_3264 0.57 -0.2
3,909,329 + Psyr_3264 0.57 -0.9
3,909,329 + Psyr_3264 0.57 +0.3
3,909,329 + Psyr_3264 0.57 +0.8
3,909,329 + Psyr_3264 0.57 -1.0
3,909,329 + Psyr_3264 0.57 -0.9
3,909,329 + Psyr_3264 0.57 -0.8
3,909,329 + Psyr_3264 0.57 -0.8
3,909,329 + Psyr_3264 0.57 -0.5
3,909,329 + Psyr_3264 0.57 +1.8
3,909,329 + Psyr_3264 0.57 -0.0
3,909,329 + Psyr_3264 0.57 +1.7
3,909,329 + Psyr_3264 0.57 +0.1
3,909,330 - Psyr_3264 0.58 +0.0
3,909,330 - Psyr_3264 0.58 +1.5
3,909,330 - Psyr_3264 0.58 +1.7
3,909,330 - Psyr_3264 0.58 +0.5
3,909,330 - Psyr_3264 0.58 +0.7
3,909,330 - Psyr_3264 0.58 +1.9
3,909,330 - Psyr_3264 0.58 +1.0
3,909,330 - Psyr_3264 0.58 +0.6
3,909,330 - Psyr_3264 0.58 +2.7
3,909,444 - Psyr_3264 0.65 -0.5
3,909,756 - Psyr_3264 0.85 +0.7
3,909,756 - Psyr_3264 0.85 +1.5
3,909,756 - Psyr_3264 0.85 +0.5
3,910,005 + +0.7
3,910,005 + +1.0
3,910,006 - +1.1
3,910,006 - -0.0
3,910,006 - -0.2
3,910,006 - -0.9
3,910,006 - -1.6
3,910,070 + -0.7
3,910,071 - -1.0
3,910,421 + Psyr_3265 0.38 +0.3
3,910,421 + Psyr_3265 0.38 -0.5
3,910,421 + Psyr_3265 0.38 -0.6
3,910,421 + Psyr_3265 0.38 +1.3
3,910,422 - Psyr_3265 0.38 +0.1
3,910,422 - Psyr_3265 0.38 -0.8
3,910,444 + Psyr_3265 0.40 -0.3
3,910,444 + Psyr_3265 0.40 -0.2
3,910,444 + Psyr_3265 0.40 +0.5
3,910,444 + Psyr_3265 0.40 -0.6
3,910,444 + Psyr_3265 0.40 +1.9
3,910,444 + Psyr_3265 0.40 +0.4
3,910,445 - Psyr_3265 0.40 -0.9
3,910,460 + Psyr_3265 0.42 -0.1
3,910,571 + Psyr_3265 0.54 +0.6
3,910,571 + Psyr_3265 0.54 +0.7
3,910,571 + Psyr_3265 0.54 +1.0
3,910,572 - Psyr_3265 0.54 -1.0
3,910,572 - Psyr_3265 0.54 +1.7
3,910,664 + Psyr_3265 0.64 +0.1
3,910,664 + Psyr_3265 0.64 +0.9
3,910,664 + Psyr_3265 0.64 -1.3
3,910,665 - Psyr_3265 0.64 -1.9
3,910,869 + Psyr_3265 0.85 -1.8
3,910,869 + Psyr_3265 0.85 -0.0
3,910,883 + Psyr_3265 0.87 -0.2
3,910,883 + Psyr_3265 0.87 -2.2
3,910,883 + Psyr_3265 0.87 -0.4
3,910,932 + +0.0

Or see this region's nucleotide sequence