Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3138

Experiment: KB with Chloramphenicol 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3137 and Psyr_3138 are separated by 243 nucleotidesPsyr_3138 and Psyr_3139 are separated by 227 nucleotides Psyr_3137: Psyr_3137 - ATPase, at 3,762,179 to 3,763,528 _3137 Psyr_3138: Psyr_3138 - Major facilitator superfamily, at 3,763,772 to 3,764,968 _3138 Psyr_3139: Psyr_3139 - conserved hypothetical protein, at 3,765,196 to 3,765,942 _3139 Position (kb) 3763 3764 3765Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3762.801 kb on + strand, within Psyr_3137at 3762.801 kb on + strand, within Psyr_3137at 3762.801 kb on + strand, within Psyr_3137at 3762.801 kb on + strand, within Psyr_3137at 3762.801 kb on + strand, within Psyr_3137at 3762.801 kb on + strand, within Psyr_3137at 3762.801 kb on + strand, within Psyr_3137at 3762.801 kb on + strand, within Psyr_3137at 3762.802 kb on - strand, within Psyr_3137at 3762.802 kb on - strand, within Psyr_3137at 3762.802 kb on - strand, within Psyr_3137at 3762.802 kb on - strand, within Psyr_3137at 3762.802 kb on - strand, within Psyr_3137at 3762.802 kb on - strand, within Psyr_3137at 3762.860 kb on + strand, within Psyr_3137at 3762.860 kb on + strand, within Psyr_3137at 3762.870 kb on + strand, within Psyr_3137at 3762.875 kb on + strand, within Psyr_3137at 3762.875 kb on + strand, within Psyr_3137at 3762.875 kb on + strand, within Psyr_3137at 3762.875 kb on + strand, within Psyr_3137at 3762.875 kb on + strand, within Psyr_3137at 3762.875 kb on + strand, within Psyr_3137at 3762.876 kb on - strand, within Psyr_3137at 3762.876 kb on - strand, within Psyr_3137at 3762.876 kb on - strand, within Psyr_3137at 3762.876 kb on - strand, within Psyr_3137at 3762.876 kb on - strand, within Psyr_3137at 3762.876 kb on - strand, within Psyr_3137at 3762.926 kb on + strand, within Psyr_3137at 3762.956 kb on - strand, within Psyr_3137at 3763.089 kb on + strand, within Psyr_3137at 3763.154 kb on + strand, within Psyr_3137at 3763.155 kb on - strand, within Psyr_3137at 3763.155 kb on - strand, within Psyr_3137at 3763.155 kb on - strand, within Psyr_3137at 3763.271 kb on + strand, within Psyr_3137at 3763.313 kb on + strand, within Psyr_3137at 3763.621 kb on + strandat 3763.621 kb on + strandat 3763.621 kb on + strandat 3763.621 kb on + strandat 3763.622 kb on - strandat 3763.622 kb on - strandat 3763.622 kb on - strandat 3763.670 kb on + strandat 3763.670 kb on + strandat 3763.671 kb on - strandat 3763.671 kb on - strandat 3763.671 kb on - strandat 3763.675 kb on - strandat 3763.675 kb on - strandat 3763.675 kb on - strandat 3763.871 kb on + strandat 3763.871 kb on + strandat 3763.871 kb on + strandat 3763.871 kb on + strandat 3763.871 kb on + strandat 3763.872 kb on - strandat 3763.872 kb on - strandat 3763.874 kb on + strandat 3763.875 kb on - strandat 3764.328 kb on + strand, within Psyr_3138at 3764.329 kb on - strand, within Psyr_3138at 3764.444 kb on + strand, within Psyr_3138at 3764.445 kb on - strand, within Psyr_3138at 3764.609 kb on + strand, within Psyr_3138at 3764.685 kb on - strand, within Psyr_3138at 3764.715 kb on + strand, within Psyr_3138at 3764.810 kb on + strand, within Psyr_3138at 3764.810 kb on + strand, within Psyr_3138at 3764.810 kb on + strand, within Psyr_3138at 3764.810 kb on + strand, within Psyr_3138at 3764.810 kb on + strand, within Psyr_3138at 3764.810 kb on + strand, within Psyr_3138at 3764.810 kb on + strand, within Psyr_3138at 3764.811 kb on - strand, within Psyr_3138at 3764.811 kb on - strand, within Psyr_3138at 3764.821 kb on + strand, within Psyr_3138at 3764.822 kb on - strand, within Psyr_3138at 3764.966 kb on + strandat 3765.050 kb on + strandat 3765.050 kb on + strandat 3765.050 kb on + strandat 3765.102 kb on + strandat 3765.102 kb on + strandat 3765.102 kb on + strandat 3765.103 kb on - strandat 3765.103 kb on - strandat 3765.103 kb on - strandat 3765.103 kb on - strandat 3765.103 kb on - strandat 3765.276 kb on + strand, within Psyr_3139at 3765.276 kb on + strand, within Psyr_3139at 3765.276 kb on + strand, within Psyr_3139at 3765.276 kb on + strand, within Psyr_3139at 3765.276 kb on + strand, within Psyr_3139at 3765.277 kb on - strand, within Psyr_3139at 3765.277 kb on - strand, within Psyr_3139at 3765.277 kb on - strand, within Psyr_3139at 3765.277 kb on - strand, within Psyr_3139at 3765.277 kb on - strand, within Psyr_3139at 3765.295 kb on + strand, within Psyr_3139at 3765.330 kb on + strand, within Psyr_3139at 3765.397 kb on + strand, within Psyr_3139at 3765.397 kb on + strand, within Psyr_3139at 3765.397 kb on + strand, within Psyr_3139at 3765.397 kb on + strand, within Psyr_3139at 3765.397 kb on + strand, within Psyr_3139at 3765.398 kb on - strand, within Psyr_3139at 3765.464 kb on + strand, within Psyr_3139at 3765.465 kb on - strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.606 kb on + strand, within Psyr_3139at 3765.606 kb on + strand, within Psyr_3139at 3765.606 kb on + strand, within Psyr_3139at 3765.606 kb on + strandat 3765.606 kb on + strand, within Psyr_3139at 3765.607 kb on - strand, within Psyr_3139at 3765.669 kb on + strand, within Psyr_3139at 3765.940 kb on + strandat 3765.940 kb on + strandat 3765.941 kb on - strandat 3765.941 kb on - strandat 3765.941 kb on - strandat 3765.941 kb on - strandat 3765.941 kb on - strandat 3765.941 kb on - strandat 3765.941 kb on - strandat 3765.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml
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3,762,801 + Psyr_3137 0.46 -0.0
3,762,801 + Psyr_3137 0.46 +0.2
3,762,801 + Psyr_3137 0.46 +0.2
3,762,801 + Psyr_3137 0.46 +0.4
3,762,801 + Psyr_3137 0.46 -1.7
3,762,801 + Psyr_3137 0.46 -0.6
3,762,801 + Psyr_3137 0.46 -0.6
3,762,801 + Psyr_3137 0.46 +0.7
3,762,802 - Psyr_3137 0.46 -0.3
3,762,802 - Psyr_3137 0.46 +2.0
3,762,802 - Psyr_3137 0.46 -0.9
3,762,802 - Psyr_3137 0.46 +0.2
3,762,802 - Psyr_3137 0.46 +0.7
3,762,802 - Psyr_3137 0.46 +1.1
3,762,860 + Psyr_3137 0.50 -0.6
3,762,860 + Psyr_3137 0.50 -3.7
3,762,870 + Psyr_3137 0.51 +0.7
3,762,875 + Psyr_3137 0.52 -0.3
3,762,875 + Psyr_3137 0.52 -0.3
3,762,875 + Psyr_3137 0.52 +0.1
3,762,875 + Psyr_3137 0.52 -0.8
3,762,875 + Psyr_3137 0.52 +1.0
3,762,875 + Psyr_3137 0.52 -1.7
3,762,876 - Psyr_3137 0.52 -1.7
3,762,876 - Psyr_3137 0.52 -0.5
3,762,876 - Psyr_3137 0.52 -0.0
3,762,876 - Psyr_3137 0.52 -1.1
3,762,876 - Psyr_3137 0.52 -0.0
3,762,876 - Psyr_3137 0.52 -1.3
3,762,926 + Psyr_3137 0.55 -0.3
3,762,956 - Psyr_3137 0.58 -0.0
3,763,089 + Psyr_3137 0.67 -2.1
3,763,154 + Psyr_3137 0.72 -2.3
3,763,155 - Psyr_3137 0.72 +0.9
3,763,155 - Psyr_3137 0.72 -0.5
3,763,155 - Psyr_3137 0.72 -1.1
3,763,271 + Psyr_3137 0.81 +0.3
3,763,313 + Psyr_3137 0.84 +0.3
3,763,621 + -0.8
3,763,621 + +0.3
3,763,621 + -0.6
3,763,621 + -1.9
3,763,622 - +0.7
3,763,622 - +1.1
3,763,622 - -0.5
3,763,670 + +1.4
3,763,670 + +1.1
3,763,671 - -0.6
3,763,671 - -1.0
3,763,671 - -0.4
3,763,675 - -0.3
3,763,675 - -0.7
3,763,675 - -1.2
3,763,871 + +1.7
3,763,871 + -2.7
3,763,871 + -0.0
3,763,871 + +0.4
3,763,871 + -0.3
3,763,872 - -0.7
3,763,872 - +0.0
3,763,874 + +1.4
3,763,875 - +0.2
3,764,328 + Psyr_3138 0.46 +0.7
3,764,329 - Psyr_3138 0.47 -0.2
3,764,444 + Psyr_3138 0.56 +1.2
3,764,445 - Psyr_3138 0.56 -0.1
3,764,609 + Psyr_3138 0.70 +0.7
3,764,685 - Psyr_3138 0.76 +0.4
3,764,715 + Psyr_3138 0.79 +0.8
3,764,810 + Psyr_3138 0.87 +0.2
3,764,810 + Psyr_3138 0.87 -0.9
3,764,810 + Psyr_3138 0.87 +1.1
3,764,810 + Psyr_3138 0.87 +1.7
3,764,810 + Psyr_3138 0.87 +0.0
3,764,810 + Psyr_3138 0.87 +0.8
3,764,810 + Psyr_3138 0.87 -1.6
3,764,811 - Psyr_3138 0.87 +0.4
3,764,811 - Psyr_3138 0.87 +0.7
3,764,821 + Psyr_3138 0.88 +2.2
3,764,822 - Psyr_3138 0.88 -0.4
3,764,966 + +0.6
3,765,050 + +0.4
3,765,050 + +1.0
3,765,050 + +1.3
3,765,102 + +1.2
3,765,102 + +2.4
3,765,102 + -1.3
3,765,103 - +0.7
3,765,103 - +1.6
3,765,103 - +1.2
3,765,103 - +0.1
3,765,103 - +1.1
3,765,276 + Psyr_3139 0.11 +0.0
3,765,276 + Psyr_3139 0.11 +0.4
3,765,276 + Psyr_3139 0.11 -1.6
3,765,276 + Psyr_3139 0.11 -0.7
3,765,276 + Psyr_3139 0.11 -0.9
3,765,277 - Psyr_3139 0.11 -0.3
3,765,277 - Psyr_3139 0.11 -1.3
3,765,277 - Psyr_3139 0.11 -0.1
3,765,277 - Psyr_3139 0.11 -0.1
3,765,277 - Psyr_3139 0.11 +0.0
3,765,295 + Psyr_3139 0.13 +1.2
3,765,330 + Psyr_3139 0.18 -0.7
3,765,397 + Psyr_3139 0.27 -1.3
3,765,397 + Psyr_3139 0.27 +0.4
3,765,397 + Psyr_3139 0.27 +1.4
3,765,397 + Psyr_3139 0.27 +0.5
3,765,397 + Psyr_3139 0.27 +1.1
3,765,398 - Psyr_3139 0.27 -1.0
3,765,464 + Psyr_3139 0.36 +0.1
3,765,465 - Psyr_3139 0.36 -1.1
3,765,602 + Psyr_3139 0.54 -1.5
3,765,602 + Psyr_3139 0.54 -0.1
3,765,602 + Psyr_3139 0.54 -0.8
3,765,602 + Psyr_3139 0.54 -1.7
3,765,602 + Psyr_3139 0.54 +0.4
3,765,602 + Psyr_3139 0.54 -1.3
3,765,602 + Psyr_3139 0.54 +1.4
3,765,602 + Psyr_3139 0.54 -1.7
3,765,602 + Psyr_3139 0.54 -2.4
3,765,602 + Psyr_3139 0.54 -0.3
3,765,602 + Psyr_3139 0.54 +1.7
3,765,602 + Psyr_3139 0.54 -0.8
3,765,602 + Psyr_3139 0.54 +0.2
3,765,602 + Psyr_3139 0.54 -0.5
3,765,602 + Psyr_3139 0.54 -1.5
3,765,603 - Psyr_3139 0.54 +0.9
3,765,603 - Psyr_3139 0.54 +1.7
3,765,603 - Psyr_3139 0.54 +0.2
3,765,603 - Psyr_3139 0.54 -0.3
3,765,603 - Psyr_3139 0.54 -0.5
3,765,603 - Psyr_3139 0.54 +1.1
3,765,603 - Psyr_3139 0.54 -0.1
3,765,603 - Psyr_3139 0.54 +1.1
3,765,603 - Psyr_3139 0.54 +1.1
3,765,603 - Psyr_3139 0.54 +0.7
3,765,603 - Psyr_3139 0.54 +0.7
3,765,603 - Psyr_3139 0.54 -0.9
3,765,603 - Psyr_3139 0.54 +1.1
3,765,603 - Psyr_3139 0.54 +0.4
3,765,603 - Psyr_3139 0.54 -2.1
3,765,603 - Psyr_3139 0.54 +0.9
3,765,603 - Psyr_3139 0.54 -0.0
3,765,603 - Psyr_3139 0.54 +0.8
3,765,603 - Psyr_3139 0.54 +0.1
3,765,603 - Psyr_3139 0.54 -0.3
3,765,603 - Psyr_3139 0.54 -0.0
3,765,606 + Psyr_3139 0.55 +0.7
3,765,606 + Psyr_3139 0.55 +0.7
3,765,606 + Psyr_3139 0.55 +0.1
3,765,606 + -0.7
3,765,606 + Psyr_3139 0.55 -0.8
3,765,607 - Psyr_3139 0.55 +1.1
3,765,669 + Psyr_3139 0.63 -0.5
3,765,940 + +0.2
3,765,940 + -0.5
3,765,941 - +0.7
3,765,941 - -0.9
3,765,941 - -2.1
3,765,941 - -0.7
3,765,941 - +1.2
3,765,941 - +1.7
3,765,941 - +1.9
3,765,941 - -1.1

Or see this region's nucleotide sequence