Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2987

Experiment: KB with Chloramphenicol 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2986 and Psyr_2987 are separated by 51 nucleotidesPsyr_2987 and Psyr_2988 overlap by 8 nucleotides Psyr_2986: Psyr_2986 - Glycoside hydrolase, family 15, at 3,576,736 to 3,578,553 _2986 Psyr_2987: Psyr_2987 - Cof protein:HAD-superfamily hydrolase, subfamily IIB, at 3,578,605 to 3,579,414 _2987 Psyr_2988: Psyr_2988 - glucose-6-phosphate 1-dehydrogenase, at 3,579,407 to 3,580,939 _2988 Position (kb) 3578 3579 3580Strain fitness (log2 ratio) -2 -1 0 1at 3577.610 kb on + strand, within Psyr_2986at 3577.611 kb on - strand, within Psyr_2986at 3577.643 kb on + strandat 3577.643 kb on + strand, within Psyr_2986at 3577.643 kb on + strand, within Psyr_2986at 3577.643 kb on + strand, within Psyr_2986at 3577.644 kb on - strand, within Psyr_2986at 3577.722 kb on - strand, within Psyr_2986at 3577.776 kb on - strand, within Psyr_2986at 3577.851 kb on + strand, within Psyr_2986at 3577.859 kb on + strand, within Psyr_2986at 3577.859 kb on + strand, within Psyr_2986at 3577.859 kb on + strand, within Psyr_2986at 3577.860 kb on - strand, within Psyr_2986at 3577.878 kb on + strand, within Psyr_2986at 3577.878 kb on + strand, within Psyr_2986at 3577.895 kb on - strand, within Psyr_2986at 3577.895 kb on - strand, within Psyr_2986at 3578.531 kb on + strandat 3578.531 kb on + strandat 3578.621 kb on + strandat 3578.621 kb on + strandat 3578.661 kb on + strandat 3578.668 kb on - strandat 3578.801 kb on + strand, within Psyr_2987at 3578.801 kb on + strand, within Psyr_2987at 3578.861 kb on + strand, within Psyr_2987at 3578.865 kb on - strand, within Psyr_2987at 3578.985 kb on - strand, within Psyr_2987at 3579.011 kb on + strand, within Psyr_2987at 3579.011 kb on + strand, within Psyr_2987at 3579.011 kb on + strand, within Psyr_2987at 3579.011 kb on + strand, within Psyr_2987at 3579.011 kb on + strand, within Psyr_2987at 3579.012 kb on - strand, within Psyr_2987at 3579.012 kb on - strand, within Psyr_2987at 3579.012 kb on - strand, within Psyr_2987at 3579.047 kb on + strand, within Psyr_2987at 3579.397 kb on + strandat 3579.397 kb on + strandat 3579.397 kb on + strandat 3579.398 kb on - strandat 3579.490 kb on - strandat 3579.490 kb on - strandat 3579.606 kb on + strand, within Psyr_2988at 3579.606 kb on + strand, within Psyr_2988at 3579.607 kb on - strand, within Psyr_2988at 3579.607 kb on - strand, within Psyr_2988at 3579.607 kb on - strand, within Psyr_2988at 3579.607 kb on - strand, within Psyr_2988at 3579.658 kb on - strand, within Psyr_2988at 3579.658 kb on - strand, within Psyr_2988at 3579.658 kb on - strand, within Psyr_2988at 3579.763 kb on - strand, within Psyr_2988at 3579.763 kb on - strand, within Psyr_2988at 3579.856 kb on + strand, within Psyr_2988at 3579.856 kb on + strand, within Psyr_2988at 3579.857 kb on - strand, within Psyr_2988at 3579.857 kb on - strand, within Psyr_2988at 3579.857 kb on - strand, within Psyr_2988at 3579.857 kb on - strand, within Psyr_2988at 3579.857 kb on - strand, within Psyr_2988at 3579.930 kb on + strand, within Psyr_2988at 3579.930 kb on + strand, within Psyr_2988at 3579.930 kb on + strand, within Psyr_2988at 3579.930 kb on + strand, within Psyr_2988at 3579.931 kb on - strand, within Psyr_2988at 3579.931 kb on - strand, within Psyr_2988at 3579.931 kb on - strand, within Psyr_2988at 3579.931 kb on - strand, within Psyr_2988at 3579.931 kb on - strand, within Psyr_2988at 3579.931 kb on - strand, within Psyr_2988at 3580.015 kb on - strand, within Psyr_2988at 3580.226 kb on + strand, within Psyr_2988at 3580.263 kb on + strand, within Psyr_2988at 3580.263 kb on + strand, within Psyr_2988at 3580.263 kb on + strand, within Psyr_2988at 3580.264 kb on - strand, within Psyr_2988at 3580.264 kb on - strand, within Psyr_2988

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml
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3,577,610 + Psyr_2986 0.48 +0.3
3,577,611 - Psyr_2986 0.48 +0.4
3,577,643 + +1.1
3,577,643 + Psyr_2986 0.50 -0.0
3,577,643 + Psyr_2986 0.50 +0.7
3,577,643 + Psyr_2986 0.50 +0.7
3,577,644 - Psyr_2986 0.50 -0.6
3,577,722 - Psyr_2986 0.54 -2.5
3,577,776 - Psyr_2986 0.57 -0.6
3,577,851 + Psyr_2986 0.61 +1.1
3,577,859 + Psyr_2986 0.62 +0.6
3,577,859 + Psyr_2986 0.62 -0.9
3,577,859 + Psyr_2986 0.62 -1.1
3,577,860 - Psyr_2986 0.62 +0.7
3,577,878 + Psyr_2986 0.63 -0.1
3,577,878 + Psyr_2986 0.63 -1.1
3,577,895 - Psyr_2986 0.64 -1.2
3,577,895 - Psyr_2986 0.64 +0.7
3,578,531 + -0.4
3,578,531 + +0.4
3,578,621 + -2.6
3,578,621 + -0.4
3,578,661 + +1.7
3,578,668 - +0.1
3,578,801 + Psyr_2987 0.24 -1.1
3,578,801 + Psyr_2987 0.24 -1.3
3,578,861 + Psyr_2987 0.32 -1.0
3,578,865 - Psyr_2987 0.32 -1.6
3,578,985 - Psyr_2987 0.47 +0.4
3,579,011 + Psyr_2987 0.50 -2.2
3,579,011 + Psyr_2987 0.50 +0.0
3,579,011 + Psyr_2987 0.50 -0.2
3,579,011 + Psyr_2987 0.50 -0.3
3,579,011 + Psyr_2987 0.50 -0.6
3,579,012 - Psyr_2987 0.50 -1.2
3,579,012 - Psyr_2987 0.50 +1.2
3,579,012 - Psyr_2987 0.50 +0.2
3,579,047 + Psyr_2987 0.55 +1.7
3,579,397 + -0.4
3,579,397 + +0.5
3,579,397 + +0.3
3,579,398 - -1.9
3,579,490 - +0.7
3,579,490 - -0.9
3,579,606 + Psyr_2988 0.13 -0.9
3,579,606 + Psyr_2988 0.13 -0.3
3,579,607 - Psyr_2988 0.13 -0.5
3,579,607 - Psyr_2988 0.13 -0.0
3,579,607 - Psyr_2988 0.13 -2.6
3,579,607 - Psyr_2988 0.13 -1.9
3,579,658 - Psyr_2988 0.16 +0.1
3,579,658 - Psyr_2988 0.16 -0.0
3,579,658 - Psyr_2988 0.16 +0.7
3,579,763 - Psyr_2988 0.23 -0.4
3,579,763 - Psyr_2988 0.23 -1.6
3,579,856 + Psyr_2988 0.29 +0.8
3,579,856 + Psyr_2988 0.29 -1.4
3,579,857 - Psyr_2988 0.29 +0.4
3,579,857 - Psyr_2988 0.29 +0.2
3,579,857 - Psyr_2988 0.29 -0.1
3,579,857 - Psyr_2988 0.29 +0.1
3,579,857 - Psyr_2988 0.29 +0.3
3,579,930 + Psyr_2988 0.34 -0.3
3,579,930 + Psyr_2988 0.34 +0.2
3,579,930 + Psyr_2988 0.34 -0.6
3,579,930 + Psyr_2988 0.34 +0.7
3,579,931 - Psyr_2988 0.34 +1.2
3,579,931 - Psyr_2988 0.34 -1.9
3,579,931 - Psyr_2988 0.34 -0.6
3,579,931 - Psyr_2988 0.34 +1.3
3,579,931 - Psyr_2988 0.34 -0.0
3,579,931 - Psyr_2988 0.34 +0.7
3,580,015 - Psyr_2988 0.40 +0.1
3,580,226 + Psyr_2988 0.53 -0.8
3,580,263 + Psyr_2988 0.56 +0.7
3,580,263 + Psyr_2988 0.56 +0.2
3,580,263 + Psyr_2988 0.56 +1.3
3,580,264 - Psyr_2988 0.56 -0.9
3,580,264 - Psyr_2988 0.56 -0.9

Or see this region's nucleotide sequence