Experiment: KB with Chloramphenicol 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2579 and Psyr_2580 are separated by 444 nucleotides Psyr_2580 and Psyr_2581 overlap by 4 nucleotides Psyr_2581 and Psyr_2582 are separated by 69 nucleotides
Psyr_2579: Psyr_2579 - Aldehyde dehydrogenase, at 3,020,119 to 3,021,555
_2579
Psyr_2580: Psyr_2580 - Sigma-70 region 2, at 3,022,000 to 3,022,509
_2580
Psyr_2581: Psyr_2581 - FecR protein, at 3,022,506 to 3,023,471
_2581
Psyr_2582: Psyr_2582 - TonB-dependent siderophore receptor, at 3,023,541 to 3,025,949
_2582
Position (kb) 3022
3023
3024 Strain fitness (log2 ratio) -1
0
1
2 at 3021.525 kb on + strand at 3021.587 kb on - strand at 3021.775 kb on + strand at 3022.190 kb on - strand, within Psyr_2580 at 3022.221 kb on + strand, within Psyr_2580 at 3022.414 kb on + strand, within Psyr_2580 at 3022.465 kb on + strand at 3022.465 kb on + strand at 3022.465 kb on + strand at 3022.466 kb on - strand at 3022.466 kb on - strand at 3022.466 kb on - strand at 3022.467 kb on + strand at 3022.481 kb on - strand at 3022.547 kb on - strand at 3022.757 kb on - strand, within Psyr_2581 at 3022.931 kb on + strand, within Psyr_2581 at 3022.958 kb on - strand, within Psyr_2581 at 3022.958 kb on - strand, within Psyr_2581 at 3022.969 kb on + strand, within Psyr_2581 at 3022.969 kb on + strand, within Psyr_2581 at 3022.970 kb on - strand, within Psyr_2581 at 3022.970 kb on - strand, within Psyr_2581 at 3023.227 kb on + strand, within Psyr_2581 at 3023.227 kb on + strand, within Psyr_2581 at 3023.227 kb on + strand, within Psyr_2581 at 3023.228 kb on - strand, within Psyr_2581 at 3023.228 kb on - strand, within Psyr_2581 at 3023.462 kb on + strand at 3023.469 kb on + strand at 3023.509 kb on + strand at 3023.509 kb on + strand at 3023.510 kb on - strand at 3023.510 kb on - strand at 3023.524 kb on + strand at 3023.540 kb on + strand at 3023.860 kb on - strand, within Psyr_2582 at 3024.042 kb on + strand, within Psyr_2582 at 3024.042 kb on + strand, within Psyr_2582 at 3024.042 kb on + strand, within Psyr_2582 at 3024.042 kb on + strand, within Psyr_2582 at 3024.043 kb on - strand, within Psyr_2582 at 3024.043 kb on - strand, within Psyr_2582 at 3024.043 kb on - strand, within Psyr_2582 at 3024.222 kb on + strand, within Psyr_2582 at 3024.222 kb on + strand, within Psyr_2582 at 3024.378 kb on + strand, within Psyr_2582 at 3024.379 kb on - strand, within Psyr_2582 at 3024.379 kb on - strand, within Psyr_2582 at 3024.379 kb on - strand, within Psyr_2582 at 3024.379 kb on - strand, within Psyr_2582 at 3024.415 kb on + strand, within Psyr_2582 at 3024.415 kb on + strand, within Psyr_2582 at 3024.416 kb on - strand, within Psyr_2582 at 3024.416 kb on - strand, within Psyr_2582
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml remove 3,021,525 + +0.8 3,021,587 - -0.4 3,021,775 + -1.0 3,022,190 - Psyr_2580 0.37 +0.4 3,022,221 + Psyr_2580 0.43 -1.7 3,022,414 + Psyr_2580 0.81 +0.0 3,022,465 + +1.3 3,022,465 + -0.6 3,022,465 + -0.4 3,022,466 - -0.1 3,022,466 - -1.1 3,022,466 - -0.1 3,022,467 + +0.9 3,022,481 - -0.5 3,022,547 - +0.0 3,022,757 - Psyr_2581 0.26 +0.2 3,022,931 + Psyr_2581 0.44 -1.3 3,022,958 - Psyr_2581 0.47 -0.6 3,022,958 - Psyr_2581 0.47 +0.9 3,022,969 + Psyr_2581 0.48 +0.0 3,022,969 + Psyr_2581 0.48 +0.6 3,022,970 - Psyr_2581 0.48 +0.6 3,022,970 - Psyr_2581 0.48 +1.1 3,023,227 + Psyr_2581 0.75 -0.1 3,023,227 + Psyr_2581 0.75 +1.5 3,023,227 + Psyr_2581 0.75 +1.2 3,023,228 - Psyr_2581 0.75 +1.0 3,023,228 - Psyr_2581 0.75 -0.9 3,023,462 + +2.6 3,023,469 + +2.0 3,023,509 + -0.6 3,023,509 + +0.3 3,023,510 - +0.3 3,023,510 - -0.9 3,023,524 + -1.0 3,023,540 + -1.0 3,023,860 - Psyr_2582 0.13 -0.3 3,024,042 + Psyr_2582 0.21 -1.0 3,024,042 + Psyr_2582 0.21 -0.1 3,024,042 + Psyr_2582 0.21 -0.4 3,024,042 + Psyr_2582 0.21 +0.0 3,024,043 - Psyr_2582 0.21 +0.2 3,024,043 - Psyr_2582 0.21 +0.8 3,024,043 - Psyr_2582 0.21 -1.0 3,024,222 + Psyr_2582 0.28 +0.0 3,024,222 + Psyr_2582 0.28 -1.2 3,024,378 + Psyr_2582 0.35 +1.0 3,024,379 - Psyr_2582 0.35 +0.6 3,024,379 - Psyr_2582 0.35 -0.4 3,024,379 - Psyr_2582 0.35 +0.2 3,024,379 - Psyr_2582 0.35 +0.9 3,024,415 + Psyr_2582 0.36 +0.0 3,024,415 + Psyr_2582 0.36 +0.0 3,024,416 - Psyr_2582 0.36 -1.7 3,024,416 - Psyr_2582 0.36 +1.9
Or see this region's nucleotide sequence