Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1925

Experiment: KB with Chloramphenicol 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Chloramphenicol 12.5 ug/ml
2,197,185	-		Psyr_1923	0.80	-0.5
2,197,226	+		Psyr_1923	0.83	+0.0
2,197,279	+		Psyr_1923	0.87	-0.1
2,197,331	-				+0.7
2,197,381	-				-1.8
2,197,383	-				+3.0
2,197,386	+				-0.5
2,197,386	+				+1.0
2,197,386	+				-0.8
2,197,386	+				-0.5
2,197,386	+				+1.4
2,197,386	+				+0.4
2,197,387	-				-0.7
2,197,387	-				-1.1
2,197,461	+				-0.2
2,197,461	+				-0.2
2,197,469	+				+1.7
2,197,469	+				-2.1
2,197,470	-				+0.3
2,197,526	-		Psyr_1924	0.18	+0.1
2,197,526	-		Psyr_1924	0.18	+0.7
2,197,526	-		Psyr_1924	0.18	-0.7
2,197,526	-		Psyr_1924	0.18	-0.3
2,197,526	-		Psyr_1924	0.18	-1.2
2,197,539	-		Psyr_1924	0.20	-1.1
2,197,600	+		Psyr_1924	0.29	-0.3
2,197,800	+		Psyr_1924	0.59	-0.3
2,197,855	+		Psyr_1924	0.68	-0.9
2,197,884	+		Psyr_1924	0.72	+1.3
2,197,885	-		Psyr_1924	0.72	-1.1
2,197,902	-		Psyr_1924	0.75	+0.7
2,197,977	+		Psyr_1924	0.86	-1.3
2,197,978	-		Psyr_1924	0.86	-0.5
2,197,978	-		Psyr_1924	0.86	-0.5
2,198,047	+				+1.7
2,198,047	+				-0.3
2,198,047	+				+0.4
2,198,047	+				-1.3
2,198,048	-				-0.9
2,198,048	-				+0.4
2,198,048	-				-0.1
2,198,048	-				-0.7
2,198,066	-				+2.3
2,198,070	+				-1.6
2,198,118	+				-1.7
2,198,118	+				-0.1
2,198,119	-				-0.2
2,198,119	-				-1.6
2,198,253	+		Psyr_1925	0.12	+0.1
2,198,253	+		Psyr_1925	0.12	-0.6
2,198,253	+		Psyr_1925	0.12	-1.1
2,198,295	+		Psyr_1925	0.15	-1.9
2,198,296	-		Psyr_1925	0.16	-1.3
2,198,296	-		Psyr_1925	0.16	-0.3
2,198,296	-		Psyr_1925	0.16	+0.7
2,198,297	+		Psyr_1925	0.16	+1.9
2,198,297	+		Psyr_1925	0.16	-1.3
2,198,298	-		Psyr_1925	0.16	-1.3
2,198,378	+		Psyr_1925	0.22	-0.4
2,198,404	-		Psyr_1925	0.24	+0.7
2,198,404	-		Psyr_1925	0.24	-1.2
2,198,404	-		Psyr_1925	0.24	-2.5
2,198,404	-		Psyr_1925	0.24	+1.1
2,198,579	-		Psyr_1925	0.38	+0.4
2,198,579	-		Psyr_1925	0.38	-0.1
2,198,607	+		Psyr_1925	0.40	+0.5
2,198,646	-		Psyr_1925	0.43	-0.5
2,198,758	+		Psyr_1925	0.52	+0.3
2,198,759	-		Psyr_1925	0.52	-1.2
2,198,867	+		Psyr_1925	0.60	+0.1
2,198,867	+		Psyr_1925	0.60	-2.9
2,198,867	+		Psyr_1925	0.60	+1.3
2,198,867	+		Psyr_1925	0.60	+1.6
2,198,868	-		Psyr_1925	0.60	+0.8
2,198,868	-		Psyr_1925	0.60	-0.2
2,198,868	-		Psyr_1925	0.60	+0.7
2,198,869	+		Psyr_1925	0.60	+0.7
2,198,870	-		Psyr_1925	0.60	+0.7
2,198,938	+		Psyr_1925	0.66	+0.7
2,198,939	-		Psyr_1925	0.66	-1.2
2,199,033	+		Psyr_1925	0.73	-2.4
2,199,033	+		Psyr_1925	0.73	-0.6
2,199,033	+		Psyr_1925	0.73	+0.1
2,199,034	-		Psyr_1925	0.73	-0.7
2,199,106	+		Psyr_1925	0.79	+0.7
2,199,298	+				-1.1
2,199,298	+				+0.2
2,199,298	+				+1.3
2,199,299	-				-1.1
2,199,299	-				+0.3
2,199,302	-				+0.2
2,199,302	-				+1.0
2,199,302	-				-0.3
2,199,302	-				-0.4
2,199,334	-				-0.1
2,199,341	+				+0.9
2,199,341	+				+0.1
2,199,341	+				-2.5
2,199,346	+				+0.7
2,199,347	-				+0.3
2,199,384	+				-0.3
2,199,384	+				+0.7
2,199,384	+				+0.7
2,199,403	+				+0.5
2,199,403	+				-0.9
2,199,403	+				+0.7
2,199,404	-				-0.8
2,199,404	-				-0.5
2,199,404	-				+1.4
2,199,460	-		Psyr_1926	0.12	+1.7
2,199,590	+		Psyr_1926	0.30	+0.8
2,199,604	-		Psyr_1926	0.32	-0.6
2,199,631	+		Psyr_1926	0.36	+0.7
2,199,632	-		Psyr_1926	0.36	+1.3
2,199,708	-		Psyr_1926	0.47	+1.0
2,199,708	-		Psyr_1926	0.47	-0.3
2,199,708	-		Psyr_1926	0.47	+0.9
2,199,782	+		Psyr_1926	0.57	+1.1
2,199,817	+		Psyr_1926	0.62	+0.7
2,199,817	+		Psyr_1926	0.62	-0.2
2,199,817	+		Psyr_1926	0.62	+1.8
2,199,817	+		Psyr_1926	0.62	-1.5
2,199,817	+		Psyr_1926	0.62	+0.4
2,199,818	-		Psyr_1926	0.62	-0.1
2,199,818	-		Psyr_1926	0.62	-0.0
2,199,818	-		Psyr_1926	0.62	-2.5
2,199,821	+		Psyr_1926	0.62	+2.7
2,199,821	+		Psyr_1926	0.62	-0.2
2,199,821	+		Psyr_1926	0.62	+2.0
2,199,872	+		Psyr_1926	0.70	+1.5
2,199,873	-		Psyr_1926	0.70	-0.3
2,199,943	+		Psyr_1926	0.80	-0.2
2,200,100	+				+0.1
2,200,107	-				+1.7
2,200,107	-				+2.3
2,200,177	+		Psyr_1927	0.18	+1.0
2,200,177	+		Psyr_1927	0.18	+0.3
2,200,177	+		Psyr_1927	0.18	+0.7
2,200,178	-		Psyr_1927	0.19	-0.1
2,200,178	-		Psyr_1927	0.19	+0.1
2,200,178	-		Psyr_1927	0.19	+0.3
2,200,178	-		Psyr_1927	0.19	-1.6
2,200,268	-		Psyr_1927	0.39	+0.0
2,200,271	+		Psyr_1927	0.39	+1.7
2,200,272	-		Psyr_1927	0.40	-0.8
2,200,272	-		Psyr_1927	0.40	-0.3
2,200,272	-		Psyr_1927	0.40	+0.1
2,200,323	-		Psyr_1927	0.51	+0.1
2,200,323	-		Psyr_1927	0.51	+0.5
2,200,326	+		Psyr_1927	0.52	-0.3
2,200,326	+		Psyr_1927	0.52	+0.3
2,200,327	-		Psyr_1927	0.52	-0.2
2,200,341	+		Psyr_1927	0.55	-0.8
2,200,341	+		Psyr_1927	0.55	-0.5
2,200,341	+		Psyr_1927	0.55	+0.7
2,200,341	+		Psyr_1927	0.55	-1.0
2,200,341	+		Psyr_1927	0.55	+1.1
2,200,341	+		Psyr_1927	0.55	+1.7
2,200,341	+		Psyr_1927	0.55	+0.3
2,200,341	+		Psyr_1927	0.55	+0.4
2,200,341	+		Psyr_1927	0.55	+1.9
2,200,341	+		Psyr_1927	0.55	+0.9
2,200,341	+		Psyr_1927	0.55	+0.1
2,200,341	+		Psyr_1927	0.55	-0.4
2,200,342	-		Psyr_1927	0.55	-0.3
2,200,342	-		Psyr_1927	0.55	-0.6
2,200,342	-		Psyr_1927	0.55	+1.5
2,200,342	-		Psyr_1927	0.55	+0.2
2,200,342	-		Psyr_1927	0.55	+0.7
2,200,343	+		Psyr_1927	0.55	+0.2
2,200,372	+		Psyr_1927	0.62	-0.9