Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1618

Experiment: KB with Chloramphenicol 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1616 and Psyr_1617 overlap by 17 nucleotidesPsyr_1617 and Psyr_1618 overlap by 1 nucleotidesPsyr_1618 and Psyr_1619 overlap by 11 nucleotidesPsyr_1619 and Psyr_1620 overlap by 8 nucleotides Psyr_1616: Psyr_1616 - Rieske [2Fe-2S] region, at 1,818,940 to 1,819,176 _1616 Psyr_1617: Psyr_1617 - conserved hypothetical protein, at 1,819,160 to 1,820,017 _1617 Psyr_1618: Psyr_1618 - Dihydrodipicolinate synthetase, at 1,820,017 to 1,820,814 _1618 Psyr_1619: Psyr_1619 - conserved hypothetical protein, at 1,820,804 to 1,821,322 _1619 Psyr_1620: Psyr_1620 - conserved hypothetical protein, at 1,821,315 to 1,822,511 _1620 Position (kb) 1820 1821Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1819.112 kb on + strand, within Psyr_1616at 1819.112 kb on + strand, within Psyr_1616at 1819.112 kb on + strand, within Psyr_1616at 1819.132 kb on + strand, within Psyr_1616at 1819.374 kb on + strand, within Psyr_1617at 1819.375 kb on - strand, within Psyr_1617at 1819.377 kb on + strand, within Psyr_1617at 1819.377 kb on + strand, within Psyr_1617at 1819.377 kb on + strand, within Psyr_1617at 1819.377 kb on + strand, within Psyr_1617at 1819.377 kb on + strand, within Psyr_1617at 1819.377 kb on + strand, within Psyr_1617at 1819.377 kb on + strand, within Psyr_1617at 1819.378 kb on - strand, within Psyr_1617at 1819.378 kb on - strand, within Psyr_1617at 1819.378 kb on - strand, within Psyr_1617at 1819.378 kb on - strand, within Psyr_1617at 1819.419 kb on + strand, within Psyr_1617at 1819.420 kb on - strand, within Psyr_1617at 1819.420 kb on - strand, within Psyr_1617at 1819.420 kb on - strand, within Psyr_1617at 1819.420 kb on - strand, within Psyr_1617at 1819.420 kb on - strand, within Psyr_1617at 1819.455 kb on + strand, within Psyr_1617at 1819.455 kb on + strand, within Psyr_1617at 1819.455 kb on + strand, within Psyr_1617at 1819.456 kb on - strand, within Psyr_1617at 1819.516 kb on + strand, within Psyr_1617at 1819.516 kb on + strand, within Psyr_1617at 1819.516 kb on + strand, within Psyr_1617at 1819.516 kb on + strand, within Psyr_1617at 1819.516 kb on + strand, within Psyr_1617at 1819.517 kb on - strand, within Psyr_1617at 1819.517 kb on - strand, within Psyr_1617at 1819.517 kb on - strand, within Psyr_1617at 1819.517 kb on - strand, within Psyr_1617at 1819.517 kb on - strand, within Psyr_1617at 1819.554 kb on - strand, within Psyr_1617at 1819.558 kb on - strand, within Psyr_1617at 1819.558 kb on - strand, within Psyr_1617at 1819.605 kb on + strand, within Psyr_1617at 1819.606 kb on - strand, within Psyr_1617at 1819.710 kb on + strand, within Psyr_1617at 1819.710 kb on + strand, within Psyr_1617at 1819.710 kb on + strand, within Psyr_1617at 1819.710 kb on + strand, within Psyr_1617at 1819.711 kb on - strand, within Psyr_1617at 1819.711 kb on - strand, within Psyr_1617at 1819.797 kb on + strand, within Psyr_1617at 1819.797 kb on + strand, within Psyr_1617at 1819.797 kb on + strand, within Psyr_1617at 1819.797 kb on + strand, within Psyr_1617at 1819.797 kb on + strand, within Psyr_1617at 1819.797 kb on + strand, within Psyr_1617at 1819.797 kb on + strand, within Psyr_1617at 1819.797 kb on + strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1820.086 kb on - strandat 1820.270 kb on + strand, within Psyr_1618at 1820.271 kb on - strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.300 kb on - strand, within Psyr_1618at 1820.300 kb on - strand, within Psyr_1618at 1820.300 kb on - strand, within Psyr_1618at 1820.300 kb on - strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.421 kb on - strand, within Psyr_1618at 1820.421 kb on - strand, within Psyr_1618at 1820.431 kb on - strand, within Psyr_1618at 1820.511 kb on + strand, within Psyr_1618at 1820.511 kb on + strand, within Psyr_1618at 1820.511 kb on + strand, within Psyr_1618at 1820.512 kb on - strand, within Psyr_1618at 1820.512 kb on - strand, within Psyr_1618at 1820.512 kb on - strand, within Psyr_1618at 1820.512 kb on - strand, within Psyr_1618at 1820.699 kb on + strand, within Psyr_1618at 1820.699 kb on + strand, within Psyr_1618at 1820.805 kb on + strandat 1820.859 kb on + strand, within Psyr_1619at 1820.859 kb on + strand, within Psyr_1619at 1820.859 kb on + strand, within Psyr_1619at 1820.859 kb on + strand, within Psyr_1619at 1820.860 kb on - strand, within Psyr_1619at 1820.966 kb on - strand, within Psyr_1619at 1820.966 kb on - strand, within Psyr_1619at 1820.966 kb on - strand, within Psyr_1619at 1820.968 kb on - strand, within Psyr_1619at 1821.074 kb on - strand, within Psyr_1619at 1821.075 kb on + strand, within Psyr_1619at 1821.076 kb on - strand, within Psyr_1619at 1821.076 kb on - strand, within Psyr_1619at 1821.076 kb on - strand, within Psyr_1619at 1821.089 kb on + strand, within Psyr_1619at 1821.129 kb on + strand, within Psyr_1619at 1821.129 kb on + strand, within Psyr_1619at 1821.129 kb on + strand, within Psyr_1619at 1821.129 kb on + strand, within Psyr_1619at 1821.130 kb on - strand, within Psyr_1619at 1821.183 kb on - strand, within Psyr_1619at 1821.216 kb on + strand, within Psyr_1619at 1821.216 kb on + strand, within Psyr_1619at 1821.216 kb on + strand, within Psyr_1619at 1821.217 kb on - strand, within Psyr_1619at 1821.399 kb on + strandat 1821.399 kb on + strandat 1821.399 kb on + strandat 1821.399 kb on + strandat 1821.399 kb on + strandat 1821.399 kb on + strandat 1821.399 kb on + strandat 1821.400 kb on - strandat 1821.400 kb on - strandat 1821.400 kb on - strandat 1821.400 kb on - strandat 1821.400 kb on - strandat 1821.403 kb on + strandat 1821.404 kb on - strandat 1821.404 kb on - strandat 1821.404 kb on - strandat 1821.404 kb on - strandat 1821.439 kb on + strand, within Psyr_1620at 1821.439 kb on + strand, within Psyr_1620at 1821.439 kb on + strand, within Psyr_1620at 1821.439 kb on + strand, within Psyr_1620at 1821.439 kb on + strand, within Psyr_1620at 1821.440 kb on - strand, within Psyr_1620at 1821.440 kb on - strand, within Psyr_1620at 1821.440 kb on - strand, within Psyr_1620at 1821.440 kb on - strand, within Psyr_1620at 1821.453 kb on + strand, within Psyr_1620at 1821.457 kb on + strand, within Psyr_1620at 1821.458 kb on - strand, within Psyr_1620at 1821.478 kb on + strand, within Psyr_1620at 1821.478 kb on + strand, within Psyr_1620at 1821.478 kb on + strand, within Psyr_1620at 1821.479 kb on - strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.560 kb on - strand, within Psyr_1620at 1821.560 kb on - strand, within Psyr_1620at 1821.560 kb on - strand, within Psyr_1620at 1821.560 kb on - strand, within Psyr_1620at 1821.661 kb on + strand, within Psyr_1620at 1821.662 kb on - strand, within Psyr_1620at 1821.724 kb on + strand, within Psyr_1620at 1821.724 kb on + strand, within Psyr_1620at 1821.724 kb on + strandat 1821.724 kb on + strand, within Psyr_1620at 1821.724 kb on + strand, within Psyr_1620at 1821.724 kb on + strand, within Psyr_1620at 1821.725 kb on - strand, within Psyr_1620at 1821.725 kb on - strand, within Psyr_1620at 1821.725 kb on - strand, within Psyr_1620at 1821.725 kb on - strand, within Psyr_1620at 1821.725 kb on - strand, within Psyr_1620at 1821.725 kb on - strand, within Psyr_1620at 1821.801 kb on - strand, within Psyr_1620

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml
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1,819,112 + Psyr_1616 0.73 -0.3
1,819,112 + Psyr_1616 0.73 -0.1
1,819,112 + Psyr_1616 0.73 -0.5
1,819,132 + Psyr_1616 0.81 +0.1
1,819,374 + Psyr_1617 0.25 +0.3
1,819,375 - Psyr_1617 0.25 -0.6
1,819,377 + Psyr_1617 0.25 -0.0
1,819,377 + Psyr_1617 0.25 -1.5
1,819,377 + Psyr_1617 0.25 -1.3
1,819,377 + Psyr_1617 0.25 -0.9
1,819,377 + Psyr_1617 0.25 +0.3
1,819,377 + Psyr_1617 0.25 -0.4
1,819,377 + Psyr_1617 0.25 -0.8
1,819,378 - Psyr_1617 0.25 +0.3
1,819,378 - Psyr_1617 0.25 -0.7
1,819,378 - Psyr_1617 0.25 -0.2
1,819,378 - Psyr_1617 0.25 -1.0
1,819,419 + Psyr_1617 0.30 -1.6
1,819,420 - Psyr_1617 0.30 +1.4
1,819,420 - Psyr_1617 0.30 +1.4
1,819,420 - Psyr_1617 0.30 -0.3
1,819,420 - Psyr_1617 0.30 +0.6
1,819,420 - Psyr_1617 0.30 -0.8
1,819,455 + Psyr_1617 0.34 -0.2
1,819,455 + Psyr_1617 0.34 -1.2
1,819,455 + Psyr_1617 0.34 -2.7
1,819,456 - Psyr_1617 0.34 +0.3
1,819,516 + Psyr_1617 0.41 +0.5
1,819,516 + Psyr_1617 0.41 -0.3
1,819,516 + Psyr_1617 0.41 -1.2
1,819,516 + Psyr_1617 0.41 +0.9
1,819,516 + Psyr_1617 0.41 -0.0
1,819,517 - Psyr_1617 0.42 -0.3
1,819,517 - Psyr_1617 0.42 +0.8
1,819,517 - Psyr_1617 0.42 +0.0
1,819,517 - Psyr_1617 0.42 -0.4
1,819,517 - Psyr_1617 0.42 +0.6
1,819,554 - Psyr_1617 0.46 +2.4
1,819,558 - Psyr_1617 0.46 -0.1
1,819,558 - Psyr_1617 0.46 +0.4
1,819,605 + Psyr_1617 0.52 +0.1
1,819,606 - Psyr_1617 0.52 -0.6
1,819,710 + Psyr_1617 0.64 -0.5
1,819,710 + Psyr_1617 0.64 -0.2
1,819,710 + Psyr_1617 0.64 +1.1
1,819,710 + Psyr_1617 0.64 +0.9
1,819,711 - Psyr_1617 0.64 +1.6
1,819,711 - Psyr_1617 0.64 +0.5
1,819,797 + Psyr_1617 0.74 +0.4
1,819,797 + Psyr_1617 0.74 -0.2
1,819,797 + Psyr_1617 0.74 -0.4
1,819,797 + Psyr_1617 0.74 -0.1
1,819,797 + Psyr_1617 0.74 +0.3
1,819,797 + Psyr_1617 0.74 +0.3
1,819,797 + Psyr_1617 0.74 -0.7
1,819,797 + Psyr_1617 0.74 -0.2
1,819,798 - Psyr_1617 0.74 +1.0
1,819,798 - Psyr_1617 0.74 +0.5
1,819,798 - Psyr_1617 0.74 +0.0
1,819,798 - Psyr_1617 0.74 +3.0
1,819,798 - Psyr_1617 0.74 -0.2
1,819,798 - Psyr_1617 0.74 +0.3
1,819,798 - Psyr_1617 0.74 +0.1
1,819,798 - Psyr_1617 0.74 +0.1
1,819,798 - Psyr_1617 0.74 -1.0
1,819,798 - Psyr_1617 0.74 -2.0
1,820,086 - +1.3
1,820,270 + Psyr_1618 0.32 -1.0
1,820,271 - Psyr_1618 0.32 -0.5
1,820,299 + Psyr_1618 0.35 +0.5
1,820,299 + Psyr_1618 0.35 +2.6
1,820,299 + Psyr_1618 0.35 +0.7
1,820,299 + Psyr_1618 0.35 +0.1
1,820,299 + Psyr_1618 0.35 -0.1
1,820,299 + Psyr_1618 0.35 +0.8
1,820,299 + Psyr_1618 0.35 -0.8
1,820,299 + Psyr_1618 0.35 +0.7
1,820,299 + Psyr_1618 0.35 +1.1
1,820,300 - Psyr_1618 0.35 +2.4
1,820,300 - Psyr_1618 0.35 +0.4
1,820,300 - Psyr_1618 0.35 -0.6
1,820,300 - Psyr_1618 0.35 +0.1
1,820,420 + Psyr_1618 0.51 -0.2
1,820,420 + Psyr_1618 0.51 +0.3
1,820,420 + Psyr_1618 0.51 +1.7
1,820,420 + Psyr_1618 0.51 +0.3
1,820,420 + Psyr_1618 0.51 +0.1
1,820,420 + Psyr_1618 0.51 +1.1
1,820,420 + Psyr_1618 0.51 -1.1
1,820,420 + Psyr_1618 0.51 -1.5
1,820,420 + Psyr_1618 0.51 +3.1
1,820,420 + Psyr_1618 0.51 +0.7
1,820,421 - Psyr_1618 0.51 +0.5
1,820,421 - Psyr_1618 0.51 +0.3
1,820,431 - Psyr_1618 0.52 +0.8
1,820,511 + Psyr_1618 0.62 +0.7
1,820,511 + Psyr_1618 0.62 +0.5
1,820,511 + Psyr_1618 0.62 +0.8
1,820,512 - Psyr_1618 0.62 +0.1
1,820,512 - Psyr_1618 0.62 -1.8
1,820,512 - Psyr_1618 0.62 -1.2
1,820,512 - Psyr_1618 0.62 -0.0
1,820,699 + Psyr_1618 0.85 -0.0
1,820,699 + Psyr_1618 0.85 -0.2
1,820,805 + +0.2
1,820,859 + Psyr_1619 0.11 +0.4
1,820,859 + Psyr_1619 0.11 -0.9
1,820,859 + Psyr_1619 0.11 +0.4
1,820,859 + Psyr_1619 0.11 -0.2
1,820,860 - Psyr_1619 0.11 +2.4
1,820,966 - Psyr_1619 0.31 +0.1
1,820,966 - Psyr_1619 0.31 -0.8
1,820,966 - Psyr_1619 0.31 +0.7
1,820,968 - Psyr_1619 0.32 +0.3
1,821,074 - Psyr_1619 0.52 +0.1
1,821,075 + Psyr_1619 0.52 -1.2
1,821,076 - Psyr_1619 0.52 -0.3
1,821,076 - Psyr_1619 0.52 -0.5
1,821,076 - Psyr_1619 0.52 +1.4
1,821,089 + Psyr_1619 0.55 +0.9
1,821,129 + Psyr_1619 0.63 -0.9
1,821,129 + Psyr_1619 0.63 -0.4
1,821,129 + Psyr_1619 0.63 +0.8
1,821,129 + Psyr_1619 0.63 -0.2
1,821,130 - Psyr_1619 0.63 +0.1
1,821,183 - Psyr_1619 0.73 +0.4
1,821,216 + Psyr_1619 0.79 +2.8
1,821,216 + Psyr_1619 0.79 -0.4
1,821,216 + Psyr_1619 0.79 +0.8
1,821,217 - Psyr_1619 0.80 -0.1
1,821,399 + +0.8
1,821,399 + -0.5
1,821,399 + +0.6
1,821,399 + -0.7
1,821,399 + +1.1
1,821,399 + -0.2
1,821,399 + +0.1
1,821,400 - +1.2
1,821,400 - +1.4
1,821,400 - -0.4
1,821,400 - -0.9
1,821,400 - -1.0
1,821,403 + -1.9
1,821,404 - -0.8
1,821,404 - -0.1
1,821,404 - -1.1
1,821,404 - -0.0
1,821,439 + Psyr_1620 0.10 +0.1
1,821,439 + Psyr_1620 0.10 +0.8
1,821,439 + Psyr_1620 0.10 +1.8
1,821,439 + Psyr_1620 0.10 +2.4
1,821,439 + Psyr_1620 0.10 -0.6
1,821,440 - Psyr_1620 0.10 +0.3
1,821,440 - Psyr_1620 0.10 +2.0
1,821,440 - Psyr_1620 0.10 +0.5
1,821,440 - Psyr_1620 0.10 -0.2
1,821,453 + Psyr_1620 0.12 -0.2
1,821,457 + Psyr_1620 0.12 +0.3
1,821,458 - Psyr_1620 0.12 -0.2
1,821,478 + Psyr_1620 0.14 -0.6
1,821,478 + Psyr_1620 0.14 -0.5
1,821,478 + Psyr_1620 0.14 +0.0
1,821,479 - Psyr_1620 0.14 -0.8
1,821,559 + Psyr_1620 0.20 +0.2
1,821,559 + Psyr_1620 0.20 -0.6
1,821,559 + Psyr_1620 0.20 -1.2
1,821,559 + Psyr_1620 0.20 +0.8
1,821,559 + Psyr_1620 0.20 +0.3
1,821,559 + Psyr_1620 0.20 +0.8
1,821,559 + Psyr_1620 0.20 +0.8
1,821,559 + Psyr_1620 0.20 +0.8
1,821,560 - Psyr_1620 0.20 -1.0
1,821,560 - Psyr_1620 0.20 -0.2
1,821,560 - Psyr_1620 0.20 -0.9
1,821,560 - Psyr_1620 0.20 -1.2
1,821,661 + Psyr_1620 0.29 -1.3
1,821,662 - Psyr_1620 0.29 +1.3
1,821,724 + Psyr_1620 0.34 +0.1
1,821,724 + Psyr_1620 0.34 -0.1
1,821,724 + +0.1
1,821,724 + Psyr_1620 0.34 +1.1
1,821,724 + Psyr_1620 0.34 +1.2
1,821,724 + Psyr_1620 0.34 -0.3
1,821,725 - Psyr_1620 0.34 +0.4
1,821,725 - Psyr_1620 0.34 -0.2
1,821,725 - Psyr_1620 0.34 -1.9
1,821,725 - Psyr_1620 0.34 +1.2
1,821,725 - Psyr_1620 0.34 +1.8
1,821,725 - Psyr_1620 0.34 +0.8
1,821,801 - Psyr_1620 0.41 +1.8

Or see this region's nucleotide sequence