Experiment: KB with Chloramphenicol 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1421 and Psyr_1422 overlap by 4 nucleotides Psyr_1422 and Psyr_1423 are separated by 428 nucleotides
Psyr_1421: Psyr_1421 - Phage integrase, at 1,607,964 to 1,609,370
_1421
Psyr_1422: Psyr_1422 - Protein of unknown function DUF1528:Relaxase, at 1,609,367 to 1,611,271
_1422
Psyr_1423: Psyr_1423 - Protein of unknown function DUF159, at 1,611,700 to 1,612,392
_1423
Position (kb) 1609
1610
1611
1612 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1608.424 kb on + strand, within Psyr_1421 at 1608.424 kb on + strand, within Psyr_1421 at 1608.424 kb on + strand, within Psyr_1421 at 1608.424 kb on + strand, within Psyr_1421 at 1608.424 kb on + strand, within Psyr_1421 at 1608.762 kb on - strand, within Psyr_1421 at 1608.772 kb on - strand, within Psyr_1421 at 1608.916 kb on + strand, within Psyr_1421 at 1608.959 kb on + strand, within Psyr_1421 at 1609.017 kb on - strand, within Psyr_1421 at 1609.017 kb on - strand, within Psyr_1421 at 1609.133 kb on - strand, within Psyr_1421 at 1609.133 kb on - strand, within Psyr_1421 at 1609.138 kb on + strand, within Psyr_1421 at 1609.138 kb on + strand, within Psyr_1421 at 1609.138 kb on + strand, within Psyr_1421 at 1609.138 kb on + strand, within Psyr_1421 at 1609.138 kb on + strand, within Psyr_1421 at 1609.138 kb on + strand, within Psyr_1421 at 1609.139 kb on - strand, within Psyr_1421 at 1609.139 kb on - strand, within Psyr_1421 at 1609.139 kb on - strand, within Psyr_1421 at 1609.139 kb on - strand, within Psyr_1421 at 1609.139 kb on - strand, within Psyr_1421 at 1609.139 kb on - strand, within Psyr_1421 at 1609.139 kb on - strand, within Psyr_1421 at 1609.139 kb on - strand, within Psyr_1421 at 1609.163 kb on - strand, within Psyr_1421 at 1609.163 kb on - strand, within Psyr_1421 at 1609.616 kb on + strand, within Psyr_1422 at 1609.617 kb on - strand, within Psyr_1422 at 1609.617 kb on - strand, within Psyr_1422 at 1609.780 kb on + strand, within Psyr_1422 at 1609.874 kb on - strand, within Psyr_1422 at 1610.026 kb on + strand, within Psyr_1422 at 1610.026 kb on + strand, within Psyr_1422 at 1610.026 kb on + strand, within Psyr_1422 at 1610.372 kb on + strand, within Psyr_1422 at 1610.372 kb on + strand, within Psyr_1422 at 1610.372 kb on + strand, within Psyr_1422 at 1610.372 kb on + strand, within Psyr_1422 at 1610.372 kb on + strand, within Psyr_1422 at 1610.373 kb on - strand, within Psyr_1422 at 1610.373 kb on - strand, within Psyr_1422 at 1610.373 kb on - strand, within Psyr_1422 at 1610.394 kb on - strand, within Psyr_1422 at 1610.521 kb on + strand, within Psyr_1422 at 1610.521 kb on + strand, within Psyr_1422 at 1610.521 kb on + strand, within Psyr_1422 at 1610.522 kb on - strand, within Psyr_1422 at 1610.542 kb on + strand, within Psyr_1422 at 1610.542 kb on + strand, within Psyr_1422 at 1610.542 kb on + strand, within Psyr_1422 at 1610.542 kb on + strand, within Psyr_1422 at 1610.542 kb on + strand, within Psyr_1422 at 1610.543 kb on - strand, within Psyr_1422 at 1610.543 kb on - strand, within Psyr_1422 at 1610.543 kb on - strand, within Psyr_1422 at 1610.543 kb on - strand, within Psyr_1422 at 1610.543 kb on - strand, within Psyr_1422 at 1610.543 kb on - strand, within Psyr_1422 at 1610.543 kb on - strand, within Psyr_1422 at 1610.543 kb on - strand, within Psyr_1422 at 1610.631 kb on + strand, within Psyr_1422 at 1610.631 kb on + strand, within Psyr_1422 at 1610.721 kb on + strand, within Psyr_1422 at 1610.721 kb on + strand, within Psyr_1422 at 1610.721 kb on + strand, within Psyr_1422 at 1610.721 kb on + strand, within Psyr_1422 at 1610.722 kb on - strand, within Psyr_1422 at 1610.722 kb on - strand, within Psyr_1422 at 1610.722 kb on - strand, within Psyr_1422 at 1610.722 kb on - strand, within Psyr_1422 at 1610.773 kb on - strand, within Psyr_1422 at 1610.773 kb on - strand, within Psyr_1422 at 1610.773 kb on - strand, within Psyr_1422 at 1610.961 kb on + strand, within Psyr_1422 at 1610.961 kb on + strand, within Psyr_1422 at 1610.961 kb on + strand, within Psyr_1422 at 1610.961 kb on + strand, within Psyr_1422 at 1610.961 kb on + strand, within Psyr_1422 at 1610.961 kb on + strand, within Psyr_1422 at 1610.961 kb on + strand, within Psyr_1422 at 1610.961 kb on + strand, within Psyr_1422 at 1610.961 kb on + strand, within Psyr_1422 at 1610.962 kb on - strand, within Psyr_1422 at 1610.962 kb on - strand, within Psyr_1422 at 1610.962 kb on - strand, within Psyr_1422 at 1610.962 kb on - strand, within Psyr_1422 at 1610.962 kb on - strand, within Psyr_1422 at 1610.973 kb on - strand, within Psyr_1422 at 1610.977 kb on + strand, within Psyr_1422 at 1610.977 kb on + strand, within Psyr_1422 at 1610.977 kb on + strand, within Psyr_1422 at 1610.977 kb on + strand, within Psyr_1422 at 1610.977 kb on + strand, within Psyr_1422 at 1610.978 kb on - strand, within Psyr_1422 at 1610.978 kb on - strand, within Psyr_1422 at 1610.978 kb on - strand, within Psyr_1422 at 1611.027 kb on + strand, within Psyr_1422 at 1611.028 kb on - strand, within Psyr_1422 at 1611.028 kb on - strand, within Psyr_1422 at 1611.028 kb on - strand, within Psyr_1422 at 1611.078 kb on + strand, within Psyr_1422 at 1611.078 kb on + strand, within Psyr_1422 at 1611.078 kb on + strand, within Psyr_1422 at 1611.079 kb on - strand, within Psyr_1422 at 1611.079 kb on - strand, within Psyr_1422 at 1611.099 kb on + strand at 1611.099 kb on + strand at 1611.099 kb on + strand at 1611.099 kb on + strand at 1611.099 kb on + strand at 1611.099 kb on + strand at 1611.265 kb on + strand at 1611.266 kb on - strand at 1611.266 kb on - strand at 1611.266 kb on - strand at 1611.274 kb on - strand at 1611.274 kb on - strand at 1611.274 kb on - strand at 1611.274 kb on - strand at 1611.274 kb on - strand at 1611.274 kb on - strand at 1611.274 kb on - strand at 1611.274 kb on - strand at 1611.313 kb on - strand at 1611.313 kb on - strand at 1611.313 kb on - strand at 1611.314 kb on + strand at 1611.314 kb on + strand at 1611.314 kb on + strand at 1611.315 kb on - strand at 1611.315 kb on - strand at 1611.315 kb on - strand at 1611.315 kb on - strand at 1611.315 kb on - strand at 1611.341 kb on + strand at 1611.341 kb on + strand at 1611.341 kb on + strand at 1611.341 kb on + strand at 1611.341 kb on + strand at 1611.341 kb on + strand at 1611.341 kb on + strand at 1611.341 kb on + strand at 1611.341 kb on + strand at 1611.341 kb on + strand at 1611.341 kb on + strand at 1611.341 kb on + strand at 1611.341 kb on + strand at 1611.341 kb on + strand at 1611.361 kb on + strand at 1611.361 kb on + strand at 1611.362 kb on - strand at 1611.362 kb on - strand at 1611.363 kb on + strand at 1611.363 kb on + strand at 1611.363 kb on + strand at 1611.364 kb on - strand at 1611.364 kb on - strand at 1611.364 kb on - strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.365 kb on + strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.366 kb on - strand at 1611.369 kb on + strand at 1611.369 kb on + strand at 1611.369 kb on + strand at 1611.369 kb on + strand at 1611.369 kb on + strand at 1611.370 kb on - strand at 1611.370 kb on - strand at 1611.370 kb on - strand at 1611.370 kb on - strand at 1611.461 kb on - strand at 1611.563 kb on - strand at 1611.563 kb on - strand at 1611.639 kb on + strand at 1611.639 kb on + strand at 1611.640 kb on - strand at 1611.640 kb on - strand at 1611.640 kb on - strand at 1611.640 kb on - strand at 1611.834 kb on + strand, within Psyr_1423 at 1611.834 kb on + strand, within Psyr_1423 at 1611.834 kb on + strand, within Psyr_1423 at 1611.834 kb on + strand, within Psyr_1423 at 1612.002 kb on + strand, within Psyr_1423 at 1612.002 kb on + strand, within Psyr_1423 at 1612.002 kb on + strand, within Psyr_1423 at 1612.003 kb on - strand, within Psyr_1423 at 1612.003 kb on - strand, within Psyr_1423 at 1612.003 kb on - strand, within Psyr_1423 at 1612.012 kb on - strand, within Psyr_1423 at 1612.012 kb on - strand, within Psyr_1423 at 1612.032 kb on - strand, within Psyr_1423 at 1612.032 kb on - strand, within Psyr_1423
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml remove 1,608,424 + Psyr_1421 0.33 +0.0 1,608,424 + Psyr_1421 0.33 +1.6 1,608,424 + Psyr_1421 0.33 -0.4 1,608,424 + Psyr_1421 0.33 -0.3 1,608,424 + Psyr_1421 0.33 -1.1 1,608,762 - Psyr_1421 0.57 -2.2 1,608,772 - Psyr_1421 0.57 +0.2 1,608,916 + Psyr_1421 0.68 -2.2 1,608,959 + Psyr_1421 0.71 -0.2 1,609,017 - Psyr_1421 0.75 -0.5 1,609,017 - Psyr_1421 0.75 -1.6 1,609,133 - Psyr_1421 0.83 +0.5 1,609,133 - Psyr_1421 0.83 -1.2 1,609,138 + Psyr_1421 0.83 +0.8 1,609,138 + Psyr_1421 0.83 -1.8 1,609,138 + Psyr_1421 0.83 +0.7 1,609,138 + Psyr_1421 0.83 -0.9 1,609,138 + Psyr_1421 0.83 +1.3 1,609,138 + Psyr_1421 0.83 +0.1 1,609,139 - Psyr_1421 0.84 -0.2 1,609,139 - Psyr_1421 0.84 -0.2 1,609,139 - Psyr_1421 0.84 +0.1 1,609,139 - Psyr_1421 0.84 -0.2 1,609,139 - Psyr_1421 0.84 +0.0 1,609,139 - Psyr_1421 0.84 +1.1 1,609,139 - Psyr_1421 0.84 -1.7 1,609,139 - Psyr_1421 0.84 +0.5 1,609,163 - Psyr_1421 0.85 +0.1 1,609,163 - Psyr_1421 0.85 +0.4 1,609,616 + Psyr_1422 0.13 -1.7 1,609,617 - Psyr_1422 0.13 -0.7 1,609,617 - Psyr_1422 0.13 +2.4 1,609,780 + Psyr_1422 0.22 +0.8 1,609,874 - Psyr_1422 0.27 +0.8 1,610,026 + Psyr_1422 0.35 +0.4 1,610,026 + Psyr_1422 0.35 -1.8 1,610,026 + Psyr_1422 0.35 -0.2 1,610,372 + Psyr_1422 0.53 -0.0 1,610,372 + Psyr_1422 0.53 -1.2 1,610,372 + Psyr_1422 0.53 -2.5 1,610,372 + Psyr_1422 0.53 +0.4 1,610,372 + Psyr_1422 0.53 -1.6 1,610,373 - Psyr_1422 0.53 -0.3 1,610,373 - Psyr_1422 0.53 -1.4 1,610,373 - Psyr_1422 0.53 -2.0 1,610,394 - Psyr_1422 0.54 -1.2 1,610,521 + Psyr_1422 0.61 -2.3 1,610,521 + Psyr_1422 0.61 +0.0 1,610,521 + Psyr_1422 0.61 +1.1 1,610,522 - Psyr_1422 0.61 -1.5 1,610,542 + Psyr_1422 0.62 +0.5 1,610,542 + Psyr_1422 0.62 -0.7 1,610,542 + Psyr_1422 0.62 +0.3 1,610,542 + Psyr_1422 0.62 -0.0 1,610,542 + Psyr_1422 0.62 -0.5 1,610,543 - Psyr_1422 0.62 -1.6 1,610,543 - Psyr_1422 0.62 -0.6 1,610,543 - Psyr_1422 0.62 +1.2 1,610,543 - Psyr_1422 0.62 -0.6 1,610,543 - Psyr_1422 0.62 -0.9 1,610,543 - Psyr_1422 0.62 -0.7 1,610,543 - Psyr_1422 0.62 -1.0 1,610,543 - Psyr_1422 0.62 -1.5 1,610,631 + Psyr_1422 0.66 -1.6 1,610,631 + Psyr_1422 0.66 -0.2 1,610,721 + Psyr_1422 0.71 -0.5 1,610,721 + Psyr_1422 0.71 +0.2 1,610,721 + Psyr_1422 0.71 -0.7 1,610,721 + Psyr_1422 0.71 -0.2 1,610,722 - Psyr_1422 0.71 -1.2 1,610,722 - Psyr_1422 0.71 -1.4 1,610,722 - Psyr_1422 0.71 -0.4 1,610,722 - Psyr_1422 0.71 +0.0 1,610,773 - Psyr_1422 0.74 -2.0 1,610,773 - Psyr_1422 0.74 -2.5 1,610,773 - Psyr_1422 0.74 -0.1 1,610,961 + Psyr_1422 0.84 +0.1 1,610,961 + Psyr_1422 0.84 +1.8 1,610,961 + Psyr_1422 0.84 +1.1 1,610,961 + Psyr_1422 0.84 -0.2 1,610,961 + Psyr_1422 0.84 -0.9 1,610,961 + Psyr_1422 0.84 +0.8 1,610,961 + Psyr_1422 0.84 +0.4 1,610,961 + Psyr_1422 0.84 -1.0 1,610,961 + Psyr_1422 0.84 -0.2 1,610,962 - Psyr_1422 0.84 -0.7 1,610,962 - Psyr_1422 0.84 -0.4 1,610,962 - Psyr_1422 0.84 -2.3 1,610,962 - Psyr_1422 0.84 +1.4 1,610,962 - Psyr_1422 0.84 +0.8 1,610,973 - Psyr_1422 0.84 +1.1 1,610,977 + Psyr_1422 0.85 -1.8 1,610,977 + Psyr_1422 0.85 +0.8 1,610,977 + Psyr_1422 0.85 +1.0 1,610,977 + Psyr_1422 0.85 -0.2 1,610,977 + Psyr_1422 0.85 -0.9 1,610,978 - Psyr_1422 0.85 -0.4 1,610,978 - Psyr_1422 0.85 -1.3 1,610,978 - Psyr_1422 0.85 +0.2 1,611,027 + Psyr_1422 0.87 -1.1 1,611,028 - Psyr_1422 0.87 -1.5 1,611,028 - Psyr_1422 0.87 +0.4 1,611,028 - Psyr_1422 0.87 -1.0 1,611,078 + Psyr_1422 0.90 -0.2 1,611,078 + Psyr_1422 0.90 -0.5 1,611,078 + Psyr_1422 0.90 -0.3 1,611,079 - Psyr_1422 0.90 -0.7 1,611,079 - Psyr_1422 0.90 -0.4 1,611,099 + -1.7 1,611,099 + +0.7 1,611,099 + +0.1 1,611,099 + +0.8 1,611,099 + -0.4 1,611,099 + -0.0 1,611,265 + -1.2 1,611,266 - -0.7 1,611,266 - -0.7 1,611,266 - -1.3 1,611,274 - +1.3 1,611,274 - -1.0 1,611,274 - +0.8 1,611,274 - +0.3 1,611,274 - +0.0 1,611,274 - -2.0 1,611,274 - -1.5 1,611,274 - -0.1 1,611,313 - -1.2 1,611,313 - +0.5 1,611,313 - -0.1 1,611,314 + -1.9 1,611,314 + -1.0 1,611,314 + -0.6 1,611,315 - -1.3 1,611,315 - +0.8 1,611,315 - +0.5 1,611,315 - -0.8 1,611,315 - -0.7 1,611,341 + -1.2 1,611,341 + -1.0 1,611,341 + -1.0 1,611,341 + -0.3 1,611,341 + +1.6 1,611,341 + -0.5 1,611,341 + +0.0 1,611,341 + +1.8 1,611,341 + -0.2 1,611,341 + +0.7 1,611,341 + -1.0 1,611,341 + -0.4 1,611,341 + -0.7 1,611,341 + -0.5 1,611,361 + -0.1 1,611,361 + +0.5 1,611,362 - -0.5 1,611,362 - +0.5 1,611,363 + -1.5 1,611,363 + +0.2 1,611,363 + -0.1 1,611,364 - -0.6 1,611,364 - +0.6 1,611,364 - -0.5 1,611,365 + -0.2 1,611,365 + +0.8 1,611,365 + -0.3 1,611,365 + -0.2 1,611,365 + -0.2 1,611,365 + +0.1 1,611,365 + -3.6 1,611,365 + -2.3 1,611,365 + -0.5 1,611,365 + +0.3 1,611,365 + +0.0 1,611,365 + +0.0 1,611,365 + +0.7 1,611,365 + +0.2 1,611,365 + -0.9 1,611,365 + -0.1 1,611,365 + -0.2 1,611,365 + -0.9 1,611,365 + -1.3 1,611,365 + -0.8 1,611,365 + +1.8 1,611,365 + -0.2 1,611,365 + +0.8 1,611,366 - +0.4 1,611,366 - -0.3 1,611,366 - -0.2 1,611,366 - -0.2 1,611,366 - +0.0 1,611,366 - +0.1 1,611,366 - -1.6 1,611,366 - +0.5 1,611,366 - -0.6 1,611,366 - -0.0 1,611,366 - +1.0 1,611,366 - -1.3 1,611,366 - -0.9 1,611,366 - -0.3 1,611,366 - +0.6 1,611,366 - -0.6 1,611,366 - -0.9 1,611,366 - -0.8 1,611,366 - +0.6 1,611,366 - -1.6 1,611,366 - +0.5 1,611,366 - +1.3 1,611,369 + -0.2 1,611,369 + +0.3 1,611,369 + +0.0 1,611,369 + -1.0 1,611,369 + +0.7 1,611,370 - +0.6 1,611,370 - +0.3 1,611,370 - +0.1 1,611,370 - -0.9 1,611,461 - -0.3 1,611,563 - +0.2 1,611,563 - +0.4 1,611,639 + +0.6 1,611,639 + -0.2 1,611,640 - -0.0 1,611,640 - -1.2 1,611,640 - -0.7 1,611,640 - -0.4 1,611,834 + Psyr_1423 0.19 -0.6 1,611,834 + Psyr_1423 0.19 -0.7 1,611,834 + Psyr_1423 0.19 -0.2 1,611,834 + Psyr_1423 0.19 +0.8 1,612,002 + Psyr_1423 0.44 -1.0 1,612,002 + Psyr_1423 0.44 -0.8 1,612,002 + Psyr_1423 0.44 +0.3 1,612,003 - Psyr_1423 0.44 -0.2 1,612,003 - Psyr_1423 0.44 -0.2 1,612,003 - Psyr_1423 0.44 -1.0 1,612,012 - Psyr_1423 0.45 -0.9 1,612,012 - Psyr_1423 0.45 -0.6 1,612,032 - Psyr_1423 0.48 -1.2 1,612,032 - Psyr_1423 0.48 -0.2
Or see this region's nucleotide sequence