Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1405

Experiment: KB with Chloramphenicol 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1404 and Psyr_1405 are separated by 341 nucleotidesPsyr_1405 and Psyr_1406 are separated by 292 nucleotides Psyr_1404: Psyr_1404 - Ferritin and Dps, at 1,590,728 to 1,591,201 _1404 Psyr_1405: Psyr_1405 - hypothetical protein, at 1,591,543 to 1,591,887 _1405 Psyr_1406: Psyr_1406 - aspartate--tRNA(Asn) ligase, at 1,592,180 to 1,593,955 _1406 Position (kb) 1591 1592Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1590.550 kb on + strandat 1590.550 kb on + strandat 1590.550 kb on + strandat 1590.641 kb on + strandat 1590.642 kb on - strandat 1590.678 kb on - strandat 1590.802 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.806 kb on + strand, within Psyr_1404at 1590.807 kb on - strand, within Psyr_1404at 1590.807 kb on - strand, within Psyr_1404at 1590.807 kb on - strand, within Psyr_1404at 1590.807 kb on - strand, within Psyr_1404at 1590.807 kb on - strand, within Psyr_1404at 1590.807 kb on - strand, within Psyr_1404at 1590.807 kb on - strand, within Psyr_1404at 1590.807 kb on - strand, within Psyr_1404at 1590.893 kb on + strand, within Psyr_1404at 1590.893 kb on + strand, within Psyr_1404at 1590.894 kb on - strand, within Psyr_1404at 1590.894 kb on - strand, within Psyr_1404at 1590.894 kb on - strand, within Psyr_1404at 1590.934 kb on + strand, within Psyr_1404at 1590.969 kb on - strand, within Psyr_1404at 1590.969 kb on - strand, within Psyr_1404at 1590.977 kb on + strand, within Psyr_1404at 1590.977 kb on + strand, within Psyr_1404at 1590.978 kb on - strand, within Psyr_1404at 1590.978 kb on - strand, within Psyr_1404at 1591.014 kb on + strand, within Psyr_1404at 1591.031 kb on - strand, within Psyr_1404at 1591.031 kb on - strand, within Psyr_1404at 1591.072 kb on + strand, within Psyr_1404at 1591.081 kb on + strand, within Psyr_1404at 1591.081 kb on + strand, within Psyr_1404at 1591.084 kb on + strand, within Psyr_1404at 1591.085 kb on - strand, within Psyr_1404at 1591.418 kb on - strandat 1591.468 kb on + strandat 1591.470 kb on + strandat 1591.470 kb on + strandat 1591.471 kb on - strandat 1591.484 kb on + strandat 1591.485 kb on - strandat 1591.485 kb on - strandat 1591.572 kb on + strandat 1591.573 kb on - strandat 1591.629 kb on + strand, within Psyr_1405at 1591.629 kb on + strand, within Psyr_1405at 1591.768 kb on + strand, within Psyr_1405at 1591.768 kb on + strand, within Psyr_1405at 1591.768 kb on + strand, within Psyr_1405at 1591.769 kb on - strand, within Psyr_1405at 1591.769 kb on - strand, within Psyr_1405at 1591.769 kb on - strand, within Psyr_1405at 1591.885 kb on + strandat 1591.885 kb on + strandat 1591.885 kb on + strandat 1591.885 kb on + strandat 1591.886 kb on - strandat 1591.890 kb on + strandat 1591.890 kb on + strandat 1591.890 kb on + strandat 1591.891 kb on - strandat 1591.891 kb on - strandat 1591.987 kb on + strandat 1592.001 kb on + strandat 1592.001 kb on + strandat 1592.029 kb on + strandat 1592.029 kb on + strandat 1592.029 kb on + strandat 1592.035 kb on + strandat 1592.035 kb on + strandat 1592.035 kb on + strandat 1592.035 kb on + strandat 1592.035 kb on + strandat 1592.035 kb on + strandat 1592.035 kb on + strandat 1592.037 kb on + strandat 1592.037 kb on + strandat 1592.037 kb on + strandat 1592.037 kb on + strandat 1592.037 kb on + strandat 1592.039 kb on + strandat 1592.039 kb on + strandat 1592.039 kb on + strandat 1592.039 kb on + strandat 1592.039 kb on + strandat 1592.039 kb on + strandat 1592.039 kb on + strandat 1592.039 kb on + strandat 1592.039 kb on + strandat 1592.039 kb on + strandat 1592.039 kb on + strandat 1592.039 kb on + strandat 1592.039 kb on + strandat 1592.112 kb on + strandat 1592.112 kb on + strandat 1592.112 kb on + strandat 1592.158 kb on + strandat 1592.158 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml
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1,590,550 + -0.2
1,590,550 + +0.3
1,590,550 + +1.8
1,590,641 + -0.7
1,590,642 - -0.7
1,590,678 - -0.7
1,590,802 + Psyr_1404 0.16 -2.0
1,590,806 + Psyr_1404 0.16 -0.7
1,590,806 + Psyr_1404 0.16 -1.1
1,590,806 + Psyr_1404 0.16 -0.6
1,590,806 + Psyr_1404 0.16 -0.2
1,590,806 + Psyr_1404 0.16 -1.2
1,590,806 + Psyr_1404 0.16 +0.8
1,590,806 + Psyr_1404 0.16 +0.0
1,590,806 + Psyr_1404 0.16 +0.1
1,590,806 + Psyr_1404 0.16 -0.7
1,590,806 + Psyr_1404 0.16 +0.5
1,590,806 + Psyr_1404 0.16 -0.4
1,590,806 + Psyr_1404 0.16 -0.2
1,590,806 + Psyr_1404 0.16 +0.6
1,590,806 + Psyr_1404 0.16 -0.6
1,590,806 + Psyr_1404 0.16 -2.1
1,590,806 + Psyr_1404 0.16 +0.4
1,590,806 + Psyr_1404 0.16 +0.5
1,590,807 - Psyr_1404 0.17 -1.5
1,590,807 - Psyr_1404 0.17 +0.3
1,590,807 - Psyr_1404 0.17 -0.0
1,590,807 - Psyr_1404 0.17 -2.9
1,590,807 - Psyr_1404 0.17 -0.9
1,590,807 - Psyr_1404 0.17 +1.1
1,590,807 - Psyr_1404 0.17 -1.3
1,590,807 - Psyr_1404 0.17 -1.2
1,590,893 + Psyr_1404 0.35 -0.7
1,590,893 + Psyr_1404 0.35 -0.3
1,590,894 - Psyr_1404 0.35 -0.7
1,590,894 - Psyr_1404 0.35 -0.0
1,590,894 - Psyr_1404 0.35 +0.2
1,590,934 + Psyr_1404 0.43 -0.2
1,590,969 - Psyr_1404 0.51 +0.3
1,590,969 - Psyr_1404 0.51 -0.8
1,590,977 + Psyr_1404 0.53 +0.3
1,590,977 + Psyr_1404 0.53 -2.5
1,590,978 - Psyr_1404 0.53 -1.2
1,590,978 - Psyr_1404 0.53 -1.9
1,591,014 + Psyr_1404 0.60 +0.5
1,591,031 - Psyr_1404 0.64 +0.8
1,591,031 - Psyr_1404 0.64 +0.8
1,591,072 + Psyr_1404 0.73 -0.2
1,591,081 + Psyr_1404 0.74 +1.4
1,591,081 + Psyr_1404 0.74 +0.8
1,591,084 + Psyr_1404 0.75 +0.1
1,591,085 - Psyr_1404 0.75 -1.7
1,591,418 - +0.6
1,591,468 + -0.4
1,591,470 + -0.2
1,591,470 + +0.5
1,591,471 - +0.8
1,591,484 + -1.3
1,591,485 - +0.8
1,591,485 - +0.0
1,591,572 + -0.2
1,591,573 - -0.4
1,591,629 + Psyr_1405 0.25 -2.9
1,591,629 + Psyr_1405 0.25 +0.8
1,591,768 + Psyr_1405 0.65 -0.4
1,591,768 + Psyr_1405 0.65 +0.8
1,591,768 + Psyr_1405 0.65 -0.8
1,591,769 - Psyr_1405 0.66 -1.3
1,591,769 - Psyr_1405 0.66 +0.1
1,591,769 - Psyr_1405 0.66 +0.4
1,591,885 + +0.8
1,591,885 + +1.8
1,591,885 + -0.1
1,591,885 + +1.0
1,591,886 - -1.3
1,591,890 + +0.3
1,591,890 + +0.7
1,591,890 + -1.0
1,591,891 - +1.8
1,591,891 - -2.6
1,591,987 + -1.7
1,592,001 + +0.4
1,592,001 + -0.0
1,592,029 + -0.7
1,592,029 + +0.8
1,592,029 + +1.0
1,592,035 + +0.8
1,592,035 + +0.7
1,592,035 + +1.3
1,592,035 + +0.8
1,592,035 + +1.1
1,592,035 + -1.5
1,592,035 + -0.7
1,592,037 + -0.9
1,592,037 + +0.5
1,592,037 + +0.6
1,592,037 + -1.1
1,592,037 + +0.1
1,592,039 + -1.5
1,592,039 + -0.3
1,592,039 + +0.8
1,592,039 + -0.3
1,592,039 + +0.1
1,592,039 + -0.5
1,592,039 + +0.3
1,592,039 + +1.2
1,592,039 + -0.0
1,592,039 + +0.2
1,592,039 + +0.8
1,592,039 + +1.0
1,592,039 + -1.6
1,592,112 + +0.3
1,592,112 + +0.1
1,592,112 + -1.2
1,592,158 + +0.7
1,592,158 + -0.1

Or see this region's nucleotide sequence