Experiment: KB with Chloramphenicol 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0993 and Psyr_0994 are separated by 24 nucleotides Psyr_0994 and Psyr_0995 are separated by 256 nucleotides Psyr_0995 and Psyr_0996 are separated by 26 nucleotides
Psyr_0993: Psyr_0993 - transcriptional regulator, LuxR family, at 1,125,648 to 1,128,410
_0993
Psyr_0994: Psyr_0994 - Metal-dependent phosphohydrolase, HD subdomain protein, at 1,128,435 to 1,129,616
_0994
Psyr_0995: Psyr_0995 - Flavin reductase-like protein, at 1,129,873 to 1,130,409
_0995
Psyr_0996: Psyr_0996 - Alpha/beta hydrolase fold protein, at 1,130,436 to 1,131,215
_0996
Position (kb) 1128
1129
1130 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1127.475 kb on + strand, within Psyr_0993 at 1127.475 kb on + strand, within Psyr_0993 at 1127.475 kb on + strand, within Psyr_0993 at 1127.475 kb on + strand, within Psyr_0993 at 1127.475 kb on + strand, within Psyr_0993 at 1127.476 kb on - strand, within Psyr_0993 at 1127.476 kb on - strand, within Psyr_0993 at 1127.476 kb on - strand, within Psyr_0993 at 1127.484 kb on + strand, within Psyr_0993 at 1127.484 kb on + strand, within Psyr_0993 at 1127.485 kb on - strand, within Psyr_0993 at 1127.527 kb on + strand, within Psyr_0993 at 1127.528 kb on - strand, within Psyr_0993 at 1127.694 kb on + strand, within Psyr_0993 at 1127.695 kb on - strand, within Psyr_0993 at 1127.695 kb on - strand, within Psyr_0993 at 1127.695 kb on - strand, within Psyr_0993 at 1127.695 kb on - strand, within Psyr_0993 at 1127.697 kb on + strand, within Psyr_0993 at 1127.711 kb on + strand, within Psyr_0993 at 1127.712 kb on - strand, within Psyr_0993 at 1127.793 kb on + strand, within Psyr_0993 at 1127.793 kb on + strand, within Psyr_0993 at 1127.793 kb on + strand, within Psyr_0993 at 1127.793 kb on + strand, within Psyr_0993 at 1127.794 kb on - strand, within Psyr_0993 at 1127.794 kb on - strand, within Psyr_0993 at 1127.794 kb on - strand, within Psyr_0993 at 1127.794 kb on - strand, within Psyr_0993 at 1127.869 kb on + strand, within Psyr_0993 at 1128.661 kb on - strand, within Psyr_0994 at 1128.683 kb on + strand, within Psyr_0994 at 1128.684 kb on - strand, within Psyr_0994 at 1128.684 kb on - strand, within Psyr_0994 at 1128.684 kb on - strand, within Psyr_0994 at 1128.684 kb on - strand, within Psyr_0994 at 1128.684 kb on - strand at 1128.811 kb on + strand, within Psyr_0994 at 1128.811 kb on + strand, within Psyr_0994 at 1128.811 kb on + strand, within Psyr_0994 at 1128.811 kb on + strand, within Psyr_0994 at 1128.811 kb on + strand, within Psyr_0994 at 1128.812 kb on - strand, within Psyr_0994 at 1128.812 kb on - strand, within Psyr_0994 at 1128.812 kb on - strand, within Psyr_0994 at 1128.812 kb on - strand, within Psyr_0994 at 1128.812 kb on - strand, within Psyr_0994 at 1128.812 kb on - strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.168 kb on + strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.169 kb on - strand, within Psyr_0994 at 1129.174 kb on + strand, within Psyr_0994 at 1129.174 kb on + strand, within Psyr_0994 at 1129.175 kb on - strand, within Psyr_0994 at 1129.389 kb on - strand, within Psyr_0994 at 1129.466 kb on + strand, within Psyr_0994 at 1129.467 kb on - strand, within Psyr_0994 at 1129.527 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.573 kb on + strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.574 kb on - strand at 1129.671 kb on + strand at 1129.671 kb on + strand at 1129.672 kb on - strand at 1129.672 kb on - strand at 1129.672 kb on - strand at 1129.672 kb on - strand at 1129.672 kb on - strand at 1129.672 kb on - strand at 1129.801 kb on + strand at 1129.802 kb on - strand at 1129.802 kb on - strand at 1129.802 kb on - strand at 1129.809 kb on - strand at 1129.922 kb on + strand at 1129.922 kb on + strand at 1129.923 kb on - strand at 1130.157 kb on + strand, within Psyr_0995 at 1130.158 kb on - strand, within Psyr_0995 at 1130.195 kb on + strand, within Psyr_0995 at 1130.195 kb on + strand, within Psyr_0995 at 1130.196 kb on - strand, within Psyr_0995 at 1130.196 kb on - strand, within Psyr_0995 at 1130.196 kb on - strand, within Psyr_0995 at 1130.217 kb on + strand, within Psyr_0995 at 1130.217 kb on + strand, within Psyr_0995 at 1130.217 kb on + strand, within Psyr_0995 at 1130.404 kb on - strand at 1130.515 kb on + strand, within Psyr_0996
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml remove 1,127,475 + Psyr_0993 0.66 +1.2 1,127,475 + Psyr_0993 0.66 -3.4 1,127,475 + Psyr_0993 0.66 -0.1 1,127,475 + Psyr_0993 0.66 +0.3 1,127,475 + Psyr_0993 0.66 -0.8 1,127,476 - Psyr_0993 0.66 +1.3 1,127,476 - Psyr_0993 0.66 +0.6 1,127,476 - Psyr_0993 0.66 +0.1 1,127,484 + Psyr_0993 0.66 +0.7 1,127,484 + Psyr_0993 0.66 -0.3 1,127,485 - Psyr_0993 0.66 -0.1 1,127,527 + Psyr_0993 0.68 +0.3 1,127,528 - Psyr_0993 0.68 +1.3 1,127,694 + Psyr_0993 0.74 -0.1 1,127,695 - Psyr_0993 0.74 +1.9 1,127,695 - Psyr_0993 0.74 -0.4 1,127,695 - Psyr_0993 0.74 -2.1 1,127,695 - Psyr_0993 0.74 -2.2 1,127,697 + Psyr_0993 0.74 +0.1 1,127,711 + Psyr_0993 0.75 +0.3 1,127,712 - Psyr_0993 0.75 -1.0 1,127,793 + Psyr_0993 0.78 +0.6 1,127,793 + Psyr_0993 0.78 +0.4 1,127,793 + Psyr_0993 0.78 -0.7 1,127,793 + Psyr_0993 0.78 +0.4 1,127,794 - Psyr_0993 0.78 +1.7 1,127,794 - Psyr_0993 0.78 +0.5 1,127,794 - Psyr_0993 0.78 +1.3 1,127,794 - Psyr_0993 0.78 +1.5 1,127,869 + Psyr_0993 0.80 -0.3 1,128,661 - Psyr_0994 0.19 -0.2 1,128,683 + Psyr_0994 0.21 -0.7 1,128,684 - Psyr_0994 0.21 +0.9 1,128,684 - Psyr_0994 0.21 +0.2 1,128,684 - Psyr_0994 0.21 +0.8 1,128,684 - Psyr_0994 0.21 +0.4 1,128,684 - +2.9 1,128,811 + Psyr_0994 0.32 -0.1 1,128,811 + Psyr_0994 0.32 -0.6 1,128,811 + Psyr_0994 0.32 -0.4 1,128,811 + Psyr_0994 0.32 -0.9 1,128,811 + Psyr_0994 0.32 +0.9 1,128,812 - Psyr_0994 0.32 +0.3 1,128,812 - Psyr_0994 0.32 +0.2 1,128,812 - Psyr_0994 0.32 -0.8 1,128,812 - Psyr_0994 0.32 +1.9 1,128,812 - Psyr_0994 0.32 +0.7 1,128,812 - Psyr_0994 0.32 -0.1 1,129,168 + Psyr_0994 0.62 -1.4 1,129,168 + Psyr_0994 0.62 +0.4 1,129,168 + Psyr_0994 0.62 -0.9 1,129,168 + Psyr_0994 0.62 +0.3 1,129,168 + Psyr_0994 0.62 -1.0 1,129,168 + Psyr_0994 0.62 +0.3 1,129,168 + Psyr_0994 0.62 -0.1 1,129,168 + Psyr_0994 0.62 +0.7 1,129,168 + Psyr_0994 0.62 +0.3 1,129,168 + Psyr_0994 0.62 -1.2 1,129,168 + Psyr_0994 0.62 +0.2 1,129,168 + Psyr_0994 0.62 -1.7 1,129,168 + Psyr_0994 0.62 +1.2 1,129,168 + Psyr_0994 0.62 +1.0 1,129,168 + Psyr_0994 0.62 -0.3 1,129,168 + Psyr_0994 0.62 +0.2 1,129,168 + Psyr_0994 0.62 -0.1 1,129,168 + Psyr_0994 0.62 +0.8 1,129,168 + Psyr_0994 0.62 +1.7 1,129,169 - Psyr_0994 0.62 -0.7 1,129,169 - Psyr_0994 0.62 -0.1 1,129,169 - Psyr_0994 0.62 +0.4 1,129,169 - Psyr_0994 0.62 +0.3 1,129,169 - Psyr_0994 0.62 -0.3 1,129,169 - Psyr_0994 0.62 +1.6 1,129,169 - Psyr_0994 0.62 +0.5 1,129,169 - Psyr_0994 0.62 -0.4 1,129,169 - Psyr_0994 0.62 +0.9 1,129,169 - Psyr_0994 0.62 +1.8 1,129,169 - Psyr_0994 0.62 +0.3 1,129,169 - Psyr_0994 0.62 +0.9 1,129,169 - Psyr_0994 0.62 +0.8 1,129,169 - Psyr_0994 0.62 +0.9 1,129,169 - Psyr_0994 0.62 +0.6 1,129,174 + Psyr_0994 0.63 +1.6 1,129,174 + Psyr_0994 0.63 +0.1 1,129,175 - Psyr_0994 0.63 -0.2 1,129,389 - Psyr_0994 0.81 +0.0 1,129,466 + Psyr_0994 0.87 -0.4 1,129,467 - Psyr_0994 0.87 -0.4 1,129,527 + +1.7 1,129,573 + -1.9 1,129,573 + +1.2 1,129,573 + +0.9 1,129,573 + -1.2 1,129,573 + +0.0 1,129,573 + +1.1 1,129,573 + +0.1 1,129,573 + -1.7 1,129,573 + -0.2 1,129,573 + -0.8 1,129,573 + -2.1 1,129,573 + -0.3 1,129,573 + -1.4 1,129,573 + +0.4 1,129,573 + +0.4 1,129,573 + +0.5 1,129,573 + -0.5 1,129,573 + +0.9 1,129,573 + +1.3 1,129,573 + -0.1 1,129,573 + +0.6 1,129,573 + +1.4 1,129,573 + +0.4 1,129,573 + -0.0 1,129,573 + +0.0 1,129,573 + +0.4 1,129,573 + +0.4 1,129,573 + +0.8 1,129,573 + +0.9 1,129,574 - -0.4 1,129,574 - -2.1 1,129,574 - +0.3 1,129,574 - +0.6 1,129,574 - +0.2 1,129,574 - -0.4 1,129,574 - +0.4 1,129,574 - -0.3 1,129,574 - +0.6 1,129,574 - +0.3 1,129,574 - +1.1 1,129,574 - -1.3 1,129,574 - +0.2 1,129,574 - +1.0 1,129,574 - +1.2 1,129,574 - +0.3 1,129,574 - +3.2 1,129,574 - -0.1 1,129,574 - +1.3 1,129,574 - -0.1 1,129,574 - +0.6 1,129,574 - +1.2 1,129,574 - -0.1 1,129,574 - -0.9 1,129,574 - -1.3 1,129,574 - +0.1 1,129,574 - -1.1 1,129,574 - -0.8 1,129,574 - +0.4 1,129,574 - +0.5 1,129,574 - +0.9 1,129,574 - +0.9 1,129,574 - -0.1 1,129,574 - +0.2 1,129,574 - -0.4 1,129,574 - -2.1 1,129,574 - +0.1 1,129,574 - -1.3 1,129,574 - -0.3 1,129,574 - +0.9 1,129,671 + +0.4 1,129,671 + -0.8 1,129,672 - +2.5 1,129,672 - -1.7 1,129,672 - +0.5 1,129,672 - +0.3 1,129,672 - -0.1 1,129,672 - +0.3 1,129,801 + +1.5 1,129,802 - +0.7 1,129,802 - -0.7 1,129,802 - +0.9 1,129,809 - -0.1 1,129,922 + -2.0 1,129,922 + -2.6 1,129,923 - -0.1 1,130,157 + Psyr_0995 0.53 +1.2 1,130,158 - Psyr_0995 0.53 -0.9 1,130,195 + Psyr_0995 0.60 -0.5 1,130,195 + Psyr_0995 0.60 -0.7 1,130,196 - Psyr_0995 0.60 +0.6 1,130,196 - Psyr_0995 0.60 +0.6 1,130,196 - Psyr_0995 0.60 +0.9 1,130,217 + Psyr_0995 0.64 -0.2 1,130,217 + Psyr_0995 0.64 +0.3 1,130,217 + Psyr_0995 0.64 +0.2 1,130,404 - -0.7 1,130,515 + Psyr_0996 0.10 -1.9
Or see this region's nucleotide sequence