Experiment: KB with Chloramphenicol 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0402 and Psyr_0403 are separated by 206 nucleotides Psyr_0403 and Psyr_0404 overlap by 1 nucleotides Psyr_0404 and Psyr_0405 overlap by 4 nucleotides
Psyr_0402: Psyr_0402 - Peptidoglycan glycosyltransferase, at 430,973 to 433,417
_0402
Psyr_0403: Psyr_0403 - Type IV pilus assembly protein PilM, at 433,624 to 434,688
_0403
Psyr_0404: Psyr_0404 - Fimbrial assembly, at 434,688 to 435,263
_0404
Psyr_0405: Psyr_0405 - Pilus assembly protein, PilO, at 435,260 to 435,883
_0405
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 432.627 kb on + strand, within Psyr_0402 at 432.627 kb on + strand, within Psyr_0402 at 432.627 kb on + strand, within Psyr_0402 at 432.628 kb on - strand, within Psyr_0402 at 432.660 kb on + strand, within Psyr_0402 at 432.660 kb on + strand, within Psyr_0402 at 432.660 kb on + strand, within Psyr_0402 at 432.660 kb on + strand, within Psyr_0402 at 432.661 kb on - strand, within Psyr_0402 at 432.726 kb on + strand, within Psyr_0402 at 432.726 kb on + strand, within Psyr_0402 at 432.726 kb on + strand, within Psyr_0402 at 432.726 kb on + strand, within Psyr_0402 at 432.726 kb on + strand, within Psyr_0402 at 432.726 kb on + strand, within Psyr_0402 at 432.727 kb on - strand, within Psyr_0402 at 432.727 kb on - strand, within Psyr_0402 at 432.727 kb on - strand, within Psyr_0402 at 432.727 kb on - strand, within Psyr_0402 at 432.727 kb on - strand, within Psyr_0402 at 432.842 kb on + strand, within Psyr_0402 at 432.842 kb on + strand, within Psyr_0402 at 432.842 kb on + strand, within Psyr_0402 at 432.842 kb on + strand, within Psyr_0402 at 432.842 kb on + strand, within Psyr_0402 at 432.842 kb on + strand, within Psyr_0402 at 432.842 kb on + strand, within Psyr_0402 at 432.843 kb on - strand, within Psyr_0402 at 432.843 kb on - strand, within Psyr_0402 at 432.843 kb on - strand, within Psyr_0402 at 432.864 kb on + strand, within Psyr_0402 at 432.864 kb on + strand, within Psyr_0402 at 432.864 kb on + strand, within Psyr_0402 at 432.864 kb on + strand, within Psyr_0402 at 432.865 kb on - strand, within Psyr_0402 at 432.865 kb on - strand, within Psyr_0402 at 432.867 kb on + strand, within Psyr_0402 at 432.867 kb on + strand, within Psyr_0402 at 432.867 kb on + strand, within Psyr_0402 at 432.867 kb on + strand, within Psyr_0402 at 432.868 kb on - strand, within Psyr_0402 at 432.868 kb on - strand, within Psyr_0402 at 432.868 kb on - strand, within Psyr_0402 at 432.868 kb on - strand, within Psyr_0402 at 432.868 kb on - strand, within Psyr_0402 at 432.868 kb on - strand, within Psyr_0402 at 432.868 kb on - strand, within Psyr_0402 at 432.868 kb on - strand, within Psyr_0402 at 432.913 kb on - strand, within Psyr_0402 at 432.927 kb on + strand, within Psyr_0402 at 432.928 kb on - strand, within Psyr_0402 at 432.928 kb on - strand, within Psyr_0402 at 432.928 kb on - strand, within Psyr_0402 at 432.952 kb on + strand, within Psyr_0402 at 432.953 kb on - strand, within Psyr_0402 at 432.953 kb on - strand, within Psyr_0402 at 432.953 kb on - strand, within Psyr_0402 at 433.058 kb on - strand, within Psyr_0402 at 433.442 kb on - strand at 433.464 kb on - strand at 433.492 kb on - strand at 433.515 kb on - strand at 433.515 kb on - strand at 433.515 kb on - strand at 433.516 kb on + strand at 433.517 kb on - strand at 433.517 kb on - strand at 433.517 kb on - strand at 433.586 kb on + strand at 433.586 kb on + strand at 433.594 kb on + strand at 433.594 kb on + strand at 433.611 kb on + strand at 433.612 kb on - strand at 433.642 kb on - strand at 433.642 kb on - strand at 433.661 kb on + strand at 433.662 kb on - strand at 433.674 kb on + strand at 433.674 kb on + strand at 433.674 kb on + strand at 433.674 kb on + strand at 433.674 kb on + strand at 433.674 kb on + strand at 433.675 kb on - strand at 433.723 kb on + strand at 433.745 kb on + strand, within Psyr_0403 at 433.746 kb on - strand, within Psyr_0403 at 433.746 kb on - strand, within Psyr_0403 at 433.963 kb on + strand, within Psyr_0403 at 433.963 kb on + strand, within Psyr_0403 at 433.963 kb on + strand, within Psyr_0403 at 433.963 kb on + strand, within Psyr_0403 at 433.963 kb on + strand, within Psyr_0403 at 433.963 kb on + strand, within Psyr_0403 at 433.963 kb on + strand, within Psyr_0403 at 433.963 kb on + strand, within Psyr_0403 at 433.963 kb on + strand, within Psyr_0403 at 433.963 kb on + strand, within Psyr_0403 at 433.964 kb on - strand, within Psyr_0403 at 433.964 kb on - strand, within Psyr_0403 at 433.964 kb on - strand, within Psyr_0403 at 433.964 kb on - strand, within Psyr_0403 at 433.964 kb on - strand, within Psyr_0403 at 433.964 kb on - strand, within Psyr_0403 at 434.272 kb on + strand, within Psyr_0403 at 434.272 kb on + strand, within Psyr_0403 at 434.272 kb on + strand, within Psyr_0403 at 434.272 kb on + strand, within Psyr_0403 at 434.272 kb on + strand, within Psyr_0403 at 434.272 kb on + strand, within Psyr_0403 at 434.272 kb on + strand, within Psyr_0403 at 434.273 kb on - strand, within Psyr_0403 at 434.273 kb on - strand, within Psyr_0403 at 434.273 kb on - strand, within Psyr_0403 at 434.389 kb on + strand, within Psyr_0403 at 434.389 kb on + strand, within Psyr_0403 at 434.389 kb on + strand, within Psyr_0403 at 434.390 kb on - strand, within Psyr_0403 at 434.390 kb on - strand, within Psyr_0403 at 434.390 kb on - strand, within Psyr_0403 at 434.390 kb on - strand, within Psyr_0403 at 434.476 kb on + strand, within Psyr_0403 at 434.476 kb on + strand, within Psyr_0403 at 434.477 kb on - strand, within Psyr_0403 at 434.477 kb on - strand, within Psyr_0403 at 434.477 kb on - strand, within Psyr_0403 at 434.704 kb on + strand at 434.704 kb on + strand at 434.704 kb on + strand at 434.704 kb on + strand at 434.704 kb on + strand at 434.704 kb on + strand at 434.705 kb on - strand at 434.705 kb on - strand at 434.705 kb on - strand at 434.705 kb on - strand at 434.705 kb on - strand at 434.705 kb on - strand at 434.811 kb on + strand, within Psyr_0404 at 434.812 kb on - strand, within Psyr_0404 at 435.027 kb on + strand, within Psyr_0404 at 435.028 kb on - strand, within Psyr_0404 at 435.028 kb on - strand, within Psyr_0404 at 435.028 kb on - strand, within Psyr_0404 at 435.030 kb on + strand, within Psyr_0404 at 435.214 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.265 kb on + strand at 435.266 kb on - strand at 435.266 kb on - strand at 435.266 kb on - strand at 435.266 kb on - strand at 435.266 kb on - strand at 435.266 kb on - strand at 435.266 kb on - strand at 435.266 kb on - strand at 435.398 kb on + strand, within Psyr_0405 at 435.398 kb on + strand, within Psyr_0405 at 435.398 kb on + strand, within Psyr_0405 at 435.399 kb on - strand, within Psyr_0405 at 435.512 kb on + strand, within Psyr_0405 at 435.513 kb on - strand, within Psyr_0405 at 435.680 kb on + strand, within Psyr_0405 at 435.680 kb on + strand, within Psyr_0405 at 435.680 kb on + strand, within Psyr_0405 at 435.680 kb on + strand, within Psyr_0405 at 435.681 kb on - strand, within Psyr_0405
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml remove 432,627 + Psyr_0402 0.68 +0.1 432,627 + Psyr_0402 0.68 -1.1 432,627 + Psyr_0402 0.68 -0.9 432,628 - Psyr_0402 0.68 +0.5 432,660 + Psyr_0402 0.69 -0.5 432,660 + Psyr_0402 0.69 -0.0 432,660 + Psyr_0402 0.69 -2.1 432,660 + Psyr_0402 0.69 -1.9 432,661 - Psyr_0402 0.69 +0.1 432,726 + Psyr_0402 0.72 +0.1 432,726 + Psyr_0402 0.72 -1.8 432,726 + Psyr_0402 0.72 -2.1 432,726 + Psyr_0402 0.72 -1.3 432,726 + Psyr_0402 0.72 -1.5 432,726 + Psyr_0402 0.72 +0.1 432,727 - Psyr_0402 0.72 +0.1 432,727 - Psyr_0402 0.72 +0.3 432,727 - Psyr_0402 0.72 -1.2 432,727 - Psyr_0402 0.72 +1.3 432,727 - Psyr_0402 0.72 -0.3 432,842 + Psyr_0402 0.76 -0.9 432,842 + Psyr_0402 0.76 +0.1 432,842 + Psyr_0402 0.76 -1.3 432,842 + Psyr_0402 0.76 -2.3 432,842 + Psyr_0402 0.76 -2.7 432,842 + Psyr_0402 0.76 -2.3 432,842 + Psyr_0402 0.76 -2.3 432,843 - Psyr_0402 0.76 +0.0 432,843 - Psyr_0402 0.76 -0.2 432,843 - Psyr_0402 0.76 -1.3 432,864 + Psyr_0402 0.77 -2.2 432,864 + Psyr_0402 0.77 -2.9 432,864 + Psyr_0402 0.77 -1.9 432,864 + Psyr_0402 0.77 -0.5 432,865 - Psyr_0402 0.77 -0.5 432,865 - Psyr_0402 0.77 -1.3 432,867 + Psyr_0402 0.77 -1.5 432,867 + Psyr_0402 0.77 -3.6 432,867 + Psyr_0402 0.77 -0.8 432,867 + Psyr_0402 0.77 -0.3 432,868 - Psyr_0402 0.78 -0.3 432,868 - Psyr_0402 0.78 +0.3 432,868 - Psyr_0402 0.78 -0.5 432,868 - Psyr_0402 0.78 +0.6 432,868 - Psyr_0402 0.78 +0.4 432,868 - Psyr_0402 0.78 -2.5 432,868 - Psyr_0402 0.78 -0.3 432,868 - Psyr_0402 0.78 -0.6 432,913 - Psyr_0402 0.79 +0.6 432,927 + Psyr_0402 0.80 -2.7 432,928 - Psyr_0402 0.80 -1.0 432,928 - Psyr_0402 0.80 +0.2 432,928 - Psyr_0402 0.80 +0.5 432,952 + Psyr_0402 0.81 -1.3 432,953 - Psyr_0402 0.81 -0.0 432,953 - Psyr_0402 0.81 -1.4 432,953 - Psyr_0402 0.81 -0.7 433,058 - Psyr_0402 0.85 +0.8 433,442 - -0.4 433,464 - -1.1 433,492 - -0.4 433,515 - -0.5 433,515 - +0.6 433,515 - -1.2 433,516 + -2.5 433,517 - +0.1 433,517 - +0.4 433,517 - +2.2 433,586 + -0.3 433,586 + -1.3 433,594 + -2.3 433,594 + -1.9 433,611 + -0.2 433,612 - -0.2 433,642 - +0.8 433,642 - -0.3 433,661 + +0.2 433,662 - +0.8 433,674 + +0.1 433,674 + +1.4 433,674 + +0.3 433,674 + +1.1 433,674 + -0.2 433,674 + -0.6 433,675 - -0.7 433,723 + -0.1 433,745 + Psyr_0403 0.11 -0.3 433,746 - Psyr_0403 0.11 +1.3 433,746 - Psyr_0403 0.11 +0.3 433,963 + Psyr_0403 0.32 +0.6 433,963 + Psyr_0403 0.32 -0.7 433,963 + Psyr_0403 0.32 +0.9 433,963 + Psyr_0403 0.32 -0.4 433,963 + Psyr_0403 0.32 +1.3 433,963 + Psyr_0403 0.32 -0.7 433,963 + Psyr_0403 0.32 -2.5 433,963 + Psyr_0403 0.32 +0.5 433,963 + Psyr_0403 0.32 +1.2 433,963 + Psyr_0403 0.32 +1.5 433,964 - Psyr_0403 0.32 +0.2 433,964 - Psyr_0403 0.32 -0.3 433,964 - Psyr_0403 0.32 +0.8 433,964 - Psyr_0403 0.32 +0.1 433,964 - Psyr_0403 0.32 -0.3 433,964 - Psyr_0403 0.32 -0.9 434,272 + Psyr_0403 0.61 +1.0 434,272 + Psyr_0403 0.61 -0.7 434,272 + Psyr_0403 0.61 +0.9 434,272 + Psyr_0403 0.61 +0.2 434,272 + Psyr_0403 0.61 +2.2 434,272 + Psyr_0403 0.61 -0.2 434,272 + Psyr_0403 0.61 +0.2 434,273 - Psyr_0403 0.61 -1.1 434,273 - Psyr_0403 0.61 +0.4 434,273 - Psyr_0403 0.61 +1.1 434,389 + Psyr_0403 0.72 +0.5 434,389 + Psyr_0403 0.72 -1.2 434,389 + Psyr_0403 0.72 -0.3 434,390 - Psyr_0403 0.72 -1.7 434,390 - Psyr_0403 0.72 +0.4 434,390 - Psyr_0403 0.72 -0.3 434,390 - Psyr_0403 0.72 -0.1 434,476 + Psyr_0403 0.80 -0.9 434,476 + Psyr_0403 0.80 +1.1 434,477 - Psyr_0403 0.80 +0.8 434,477 - Psyr_0403 0.80 -0.5 434,477 - Psyr_0403 0.80 -0.3 434,704 + +0.3 434,704 + +0.4 434,704 + +0.5 434,704 + -0.3 434,704 + +0.7 434,704 + +0.5 434,705 - +0.2 434,705 - +0.2 434,705 - +1.9 434,705 - +1.1 434,705 - -0.5 434,705 - +1.6 434,811 + Psyr_0404 0.21 +0.7 434,812 - Psyr_0404 0.22 +1.6 435,027 + Psyr_0404 0.59 +0.5 435,028 - Psyr_0404 0.59 -1.5 435,028 - Psyr_0404 0.59 +0.3 435,028 - Psyr_0404 0.59 +0.8 435,030 + Psyr_0404 0.59 -1.7 435,214 + +0.4 435,265 + +0.7 435,265 + -0.3 435,265 + -0.5 435,265 + -0.9 435,265 + -0.8 435,265 + +0.2 435,265 + -0.7 435,265 + +0.3 435,265 + +0.5 435,265 + +1.1 435,265 + +1.4 435,265 + +1.7 435,265 + +0.5 435,265 + +0.1 435,265 + +0.6 435,265 + +4.1 435,265 + +0.5 435,266 - +0.5 435,266 - +0.6 435,266 - +0.4 435,266 - +0.1 435,266 - -0.2 435,266 - -0.5 435,266 - +0.8 435,266 - +0.1 435,398 + Psyr_0405 0.22 +0.9 435,398 + Psyr_0405 0.22 -0.6 435,398 + Psyr_0405 0.22 -1.3 435,399 - Psyr_0405 0.22 -0.6 435,512 + Psyr_0405 0.40 +1.1 435,513 - Psyr_0405 0.41 -0.2 435,680 + Psyr_0405 0.67 -0.2 435,680 + Psyr_0405 0.67 -0.1 435,680 + Psyr_0405 0.67 -0.9 435,680 + Psyr_0405 0.67 -0.2 435,681 - Psyr_0405 0.67 -1.1
Or see this region's nucleotide sequence