Experiment: KB with Chloramphenicol 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0277 and Psyr_0278 overlap by 8 nucleotides Psyr_0278 and Psyr_0279 are separated by 38 nucleotides Psyr_0279 and Psyr_0280 are separated by 152 nucleotides
Psyr_0277: Psyr_0277 - ABC transporter, at 295,000 to 295,788
_0277
Psyr_0278: Psyr_0278 - ABC-3, at 295,781 to 296,569
_0278
Psyr_0279: Psyr_0279 - lipoprotein, putative, at 296,608 to 297,324
_0279
Psyr_0280: Psyr_0280 - Catalase, at 297,477 to 299,627
_0280
Position (kb) 296
297
298 Strain fitness (log2 ratio) -2
-1
0
1
2 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.681 kb on + strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.682 kb on - strand, within Psyr_0277 at 295.776 kb on + strand at 295.776 kb on + strand at 295.776 kb on + strand at 295.777 kb on - strand at 295.777 kb on - strand at 295.794 kb on + strand at 295.795 kb on - strand at 295.795 kb on - strand at 295.799 kb on + strand at 295.799 kb on + strand at 295.799 kb on + strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.800 kb on - strand at 295.877 kb on + strand, within Psyr_0278 at 295.877 kb on + strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 295.878 kb on - strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.278 kb on + strand, within Psyr_0278 at 296.279 kb on - strand, within Psyr_0278 at 296.279 kb on - strand, within Psyr_0278 at 296.279 kb on - strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.356 kb on + strand, within Psyr_0278 at 296.357 kb on - strand, within Psyr_0278 at 296.357 kb on - strand, within Psyr_0278 at 296.466 kb on + strand, within Psyr_0278 at 296.467 kb on - strand, within Psyr_0278 at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.506 kb on + strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.508 kb on + strand at 296.509 kb on - strand at 296.509 kb on - strand at 296.568 kb on - strand at 296.593 kb on + strand at 296.594 kb on - strand at 296.594 kb on - strand at 296.594 kb on - strand at 296.629 kb on + strand at 296.630 kb on - strand at 296.630 kb on - strand at 296.630 kb on - strand at 296.630 kb on - strand at 296.851 kb on + strand, within Psyr_0279 at 296.852 kb on - strand, within Psyr_0279 at 296.852 kb on - strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.870 kb on + strand, within Psyr_0279 at 296.871 kb on - strand, within Psyr_0279 at 297.404 kb on + strand at 297.404 kb on + strand at 297.405 kb on - strand at 297.405 kb on - strand at 297.405 kb on - strand at 297.405 kb on - strand at 297.407 kb on - strand at 297.464 kb on + strand at 297.464 kb on + strand at 297.464 kb on + strand at 297.464 kb on + strand at 297.464 kb on + strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.571 kb on - strand at 297.661 kb on + strand at 297.661 kb on + strand at 297.661 kb on + strand at 297.661 kb on + strand at 297.661 kb on + strand at 297.662 kb on - strand at 298.008 kb on + strand, within Psyr_0280 at 298.008 kb on + strand, within Psyr_0280 at 298.009 kb on - strand, within Psyr_0280 at 298.009 kb on - strand, within Psyr_0280 at 298.114 kb on + strand, within Psyr_0280 at 298.114 kb on + strand, within Psyr_0280 at 298.114 kb on + strand, within Psyr_0280 at 298.115 kb on - strand, within Psyr_0280 at 298.115 kb on - strand, within Psyr_0280 at 298.115 kb on - strand, within Psyr_0280 at 298.115 kb on - strand, within Psyr_0280 at 298.147 kb on + strand, within Psyr_0280 at 298.273 kb on + strand, within Psyr_0280
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml remove 295,681 + Psyr_0277 0.86 +0.2 295,681 + Psyr_0277 0.86 -0.7 295,681 + Psyr_0277 0.86 +0.1 295,681 + Psyr_0277 0.86 -2.3 295,681 + Psyr_0277 0.86 -1.5 295,682 - Psyr_0277 0.86 -0.3 295,682 - Psyr_0277 0.86 -0.0 295,682 - Psyr_0277 0.86 +0.1 295,682 - Psyr_0277 0.86 -0.1 295,682 - Psyr_0277 0.86 +0.1 295,682 - Psyr_0277 0.86 +0.3 295,776 + +0.1 295,776 + -0.1 295,776 + -0.2 295,777 - +0.4 295,777 - -0.3 295,794 + +0.6 295,795 - -0.5 295,795 - -0.1 295,799 + +0.7 295,799 + +0.1 295,799 + -0.5 295,800 - -1.1 295,800 - +0.7 295,800 - +1.2 295,800 - -0.4 295,800 - -0.3 295,800 - +0.6 295,800 - +0.8 295,800 - -0.0 295,800 - -0.1 295,800 - +0.5 295,877 + Psyr_0278 0.12 +0.1 295,877 + Psyr_0278 0.12 -2.1 295,878 - Psyr_0278 0.12 -0.3 295,878 - Psyr_0278 0.12 +1.1 295,878 - Psyr_0278 0.12 +0.4 295,878 - Psyr_0278 0.12 +0.8 296,278 + Psyr_0278 0.63 -0.7 296,278 + Psyr_0278 0.63 -0.2 296,278 + Psyr_0278 0.63 -0.9 296,278 + Psyr_0278 0.63 -0.4 296,278 + Psyr_0278 0.63 -0.1 296,279 - Psyr_0278 0.63 +0.5 296,279 - Psyr_0278 0.63 +0.3 296,279 - Psyr_0278 0.63 +0.1 296,356 + Psyr_0278 0.73 -0.7 296,356 + Psyr_0278 0.73 +0.9 296,356 + Psyr_0278 0.73 -0.4 296,356 + Psyr_0278 0.73 -0.2 296,357 - Psyr_0278 0.73 -0.4 296,357 - Psyr_0278 0.73 -1.4 296,466 + Psyr_0278 0.87 +0.1 296,467 - Psyr_0278 0.87 +0.2 296,506 + +0.2 296,506 + +0.3 296,506 + -2.0 296,506 + +0.5 296,506 + +1.1 296,506 + -0.2 296,507 - +0.6 296,507 - +1.3 296,507 - -1.4 296,507 - +0.2 296,507 - +0.2 296,508 + +1.4 296,508 + +1.2 296,508 + +1.4 296,508 + +1.9 296,508 + +0.1 296,509 - -0.5 296,509 - +0.1 296,568 - +0.3 296,593 + -0.5 296,594 - -0.1 296,594 - +0.5 296,594 - -0.4 296,629 + -0.5 296,630 - +0.4 296,630 - -1.2 296,630 - -0.1 296,630 - +0.6 296,851 + Psyr_0279 0.34 -0.1 296,852 - Psyr_0279 0.34 -0.5 296,852 - Psyr_0279 0.34 -0.4 296,870 + Psyr_0279 0.37 +0.1 296,870 + Psyr_0279 0.37 -1.1 296,870 + Psyr_0279 0.37 -0.2 296,870 + Psyr_0279 0.37 -0.0 296,870 + Psyr_0279 0.37 -0.9 296,870 + Psyr_0279 0.37 +0.2 296,870 + Psyr_0279 0.37 -0.2 296,871 - Psyr_0279 0.37 -1.6 297,404 + +0.7 297,404 + +0.9 297,405 - +0.1 297,405 - +0.1 297,405 - +0.1 297,405 - -0.1 297,407 - -0.3 297,464 + +1.5 297,464 + +0.4 297,464 + +1.4 297,464 + +0.8 297,464 + +1.1 297,465 - -1.3 297,465 - +0.4 297,465 - +0.8 297,465 - +0.7 297,465 - +0.4 297,465 - +0.1 297,571 - +1.3 297,661 + +0.7 297,661 + +0.1 297,661 + -0.9 297,661 + +0.4 297,661 + +0.8 297,662 - +1.4 298,008 + Psyr_0280 0.25 +1.8 298,008 + Psyr_0280 0.25 +0.4 298,009 - Psyr_0280 0.25 +1.1 298,009 - Psyr_0280 0.25 +0.3 298,114 + Psyr_0280 0.30 -1.0 298,114 + Psyr_0280 0.30 -0.6 298,114 + Psyr_0280 0.30 -0.5 298,115 - Psyr_0280 0.30 -1.0 298,115 - Psyr_0280 0.30 +0.4 298,115 - Psyr_0280 0.30 +0.2 298,115 - Psyr_0280 0.30 +0.5 298,147 + Psyr_0280 0.31 +1.2 298,273 + Psyr_0280 0.37 +0.3
Or see this region's nucleotide sequence