Experiment: KB with Chloramphenicol 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0028 and Psyr_0029 are separated by 36 nucleotides Psyr_0029 and Psyr_0030 are separated by 113 nucleotides
Psyr_0028: Psyr_0028 - Substrate-binding region of ABC-type glycine betaine transport system, at 31,768 to 32,694
_0028
Psyr_0029: Psyr_0029 - Sulfatase, at 32,731 to 34,236
_0029
Psyr_0030: Psyr_0030 - transcriptional regulator, LysR family, at 34,350 to 35,300
_0030
Position (kb) 32
33
34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 31.752 kb on + strand at 31.752 kb on + strand at 31.752 kb on + strand at 31.752 kb on + strand at 31.752 kb on + strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.756 kb on + strand at 31.757 kb on - strand at 31.769 kb on + strand at 31.770 kb on - strand at 31.992 kb on - strand, within Psyr_0028 at 31.992 kb on - strand, within Psyr_0028 at 32.011 kb on - strand, within Psyr_0028 at 32.011 kb on - strand, within Psyr_0028 at 32.036 kb on + strand, within Psyr_0028 at 32.037 kb on - strand, within Psyr_0028 at 32.037 kb on - strand, within Psyr_0028 at 32.037 kb on - strand, within Psyr_0028 at 32.057 kb on + strand, within Psyr_0028 at 32.057 kb on + strand, within Psyr_0028 at 32.057 kb on + strand, within Psyr_0028 at 32.058 kb on - strand, within Psyr_0028 at 32.058 kb on - strand, within Psyr_0028 at 32.058 kb on - strand, within Psyr_0028 at 32.264 kb on + strand, within Psyr_0028 at 32.264 kb on + strand, within Psyr_0028 at 32.264 kb on + strand, within Psyr_0028 at 32.265 kb on - strand, within Psyr_0028 at 32.265 kb on - strand, within Psyr_0028 at 32.265 kb on - strand, within Psyr_0028 at 32.337 kb on - strand, within Psyr_0028 at 32.337 kb on - strand, within Psyr_0028 at 32.420 kb on + strand, within Psyr_0028 at 32.420 kb on + strand, within Psyr_0028 at 32.421 kb on - strand, within Psyr_0028 at 32.421 kb on - strand, within Psyr_0028 at 32.489 kb on + strand, within Psyr_0028 at 32.490 kb on - strand, within Psyr_0028 at 32.683 kb on + strand at 32.700 kb on + strand at 32.700 kb on + strand at 32.700 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.794 kb on - strand at 32.905 kb on + strand, within Psyr_0029 at 33.047 kb on + strand, within Psyr_0029 at 33.047 kb on + strand, within Psyr_0029 at 33.047 kb on + strand, within Psyr_0029 at 33.048 kb on - strand, within Psyr_0029 at 33.048 kb on - strand, within Psyr_0029 at 33.050 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.287 kb on + strand, within Psyr_0029 at 33.288 kb on - strand, within Psyr_0029 at 33.288 kb on - strand, within Psyr_0029 at 33.455 kb on + strand, within Psyr_0029 at 33.455 kb on + strand, within Psyr_0029 at 33.455 kb on + strand, within Psyr_0029 at 33.455 kb on + strand, within Psyr_0029 at 33.455 kb on + strand, within Psyr_0029 at 33.455 kb on + strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.473 kb on + strand, within Psyr_0029 at 33.473 kb on + strand, within Psyr_0029 at 33.474 kb on - strand, within Psyr_0029 at 33.530 kb on + strand, within Psyr_0029 at 33.530 kb on + strand, within Psyr_0029 at 33.530 kb on + strand, within Psyr_0029 at 33.530 kb on + strand, within Psyr_0029 at 33.531 kb on - strand, within Psyr_0029 at 33.531 kb on - strand, within Psyr_0029 at 33.531 kb on - strand, within Psyr_0029 at 33.531 kb on - strand, within Psyr_0029 at 33.598 kb on + strand, within Psyr_0029 at 33.598 kb on + strand, within Psyr_0029 at 33.599 kb on - strand, within Psyr_0029 at 33.599 kb on - strand, within Psyr_0029 at 33.614 kb on + strand, within Psyr_0029 at 33.644 kb on + strand, within Psyr_0029 at 33.644 kb on + strand, within Psyr_0029 at 33.645 kb on - strand, within Psyr_0029 at 33.716 kb on + strand, within Psyr_0029 at 33.716 kb on + strand, within Psyr_0029 at 33.717 kb on - strand, within Psyr_0029 at 33.722 kb on + strand, within Psyr_0029 at 33.722 kb on + strand, within Psyr_0029 at 33.722 kb on + strand, within Psyr_0029 at 33.723 kb on - strand, within Psyr_0029 at 33.723 kb on - strand, within Psyr_0029 at 33.816 kb on - strand, within Psyr_0029 at 33.864 kb on - strand, within Psyr_0029 at 33.960 kb on - strand, within Psyr_0029 at 33.986 kb on + strand, within Psyr_0029 at 33.986 kb on + strand, within Psyr_0029 at 33.986 kb on + strand, within Psyr_0029 at 33.986 kb on + strand, within Psyr_0029 at 33.986 kb on + strand, within Psyr_0029 at 33.987 kb on - strand, within Psyr_0029 at 34.117 kb on + strand at 34.117 kb on + strand at 34.118 kb on - strand at 34.118 kb on - strand at 34.238 kb on + strand at 34.238 kb on + strand at 34.238 kb on + strand at 34.239 kb on - strand at 34.239 kb on - strand at 34.239 kb on - strand at 34.245 kb on + strand at 34.246 kb on - strand at 34.246 kb on - strand at 34.298 kb on + strand at 34.319 kb on + strand at 34.320 kb on - strand at 34.334 kb on - strand at 34.414 kb on + strand at 34.524 kb on + strand, within Psyr_0030 at 34.524 kb on + strand, within Psyr_0030 at 34.525 kb on - strand, within Psyr_0030 at 34.532 kb on + strand, within Psyr_0030 at 34.609 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.979 kb on - strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.038 kb on - strand, within Psyr_0030 at 35.038 kb on - strand, within Psyr_0030 at 35.038 kb on - strand, within Psyr_0030 at 35.038 kb on - strand, within Psyr_0030 at 35.038 kb on - strand, within Psyr_0030 at 35.169 kb on + strand, within Psyr_0030 at 35.169 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chloramphenicol 12.5 ug/ml remove 31,752 + +0.2 31,752 + -0.4 31,752 + +0.0 31,752 + +0.3 31,752 + +0.3 31,753 - -0.7 31,753 - -0.1 31,753 - +1.4 31,753 - +1.7 31,753 - -0.5 31,753 - +1.8 31,753 - -0.8 31,753 - +0.1 31,753 - +0.5 31,756 + +0.3 31,757 - -0.1 31,769 + +0.3 31,770 - -0.7 31,992 - Psyr_0028 0.24 +0.6 31,992 - Psyr_0028 0.24 -2.5 32,011 - Psyr_0028 0.26 -1.7 32,011 - Psyr_0028 0.26 +0.6 32,036 + Psyr_0028 0.29 +1.7 32,037 - Psyr_0028 0.29 +0.6 32,037 - Psyr_0028 0.29 +0.2 32,037 - Psyr_0028 0.29 +1.4 32,057 + Psyr_0028 0.31 +0.2 32,057 + Psyr_0028 0.31 -0.6 32,057 + Psyr_0028 0.31 -1.3 32,058 - Psyr_0028 0.31 -0.0 32,058 - Psyr_0028 0.31 +0.5 32,058 - Psyr_0028 0.31 +0.0 32,264 + Psyr_0028 0.54 +1.3 32,264 + Psyr_0028 0.54 -0.8 32,264 + Psyr_0028 0.54 -0.1 32,265 - Psyr_0028 0.54 +0.5 32,265 - Psyr_0028 0.54 -0.1 32,265 - Psyr_0028 0.54 -0.2 32,337 - Psyr_0028 0.61 +0.7 32,337 - Psyr_0028 0.61 -1.5 32,420 + Psyr_0028 0.70 -0.7 32,420 + Psyr_0028 0.70 -1.9 32,421 - Psyr_0028 0.70 +0.4 32,421 - Psyr_0028 0.70 -0.3 32,489 + Psyr_0028 0.78 +0.6 32,490 - Psyr_0028 0.78 -0.3 32,683 + +0.1 32,700 + -0.5 32,700 + +0.1 32,700 + -0.1 32,792 + +0.0 32,792 + -0.4 32,792 + -0.2 32,792 + +0.3 32,792 + -0.9 32,792 + -0.1 32,792 + -0.2 32,792 + -1.1 32,792 + -0.3 32,792 + +0.8 32,792 + -0.4 32,792 + -0.4 32,792 + +0.8 32,793 - +0.4 32,793 - +0.1 32,793 - -0.5 32,793 - +0.7 32,793 - +1.7 32,793 - -0.2 32,793 - -2.8 32,793 - -0.0 32,793 - -0.1 32,793 - -1.7 32,793 - -0.5 32,793 - +0.1 32,794 - +0.2 32,905 + Psyr_0029 0.12 +0.3 33,047 + Psyr_0029 0.21 +0.5 33,047 + Psyr_0029 0.21 +0.8 33,047 + Psyr_0029 0.21 -0.6 33,048 - Psyr_0029 0.21 -0.2 33,048 - Psyr_0029 0.21 +0.8 33,050 + Psyr_0029 0.21 +1.9 33,110 + Psyr_0029 0.25 -0.1 33,110 + Psyr_0029 0.25 -1.8 33,110 + Psyr_0029 0.25 +1.1 33,110 + Psyr_0029 0.25 -0.6 33,110 + Psyr_0029 0.25 +1.0 33,110 + Psyr_0029 0.25 +0.3 33,110 + Psyr_0029 0.25 -1.4 33,110 + Psyr_0029 0.25 -0.7 33,110 + Psyr_0029 0.25 -0.6 33,111 - Psyr_0029 0.25 +0.1 33,111 - Psyr_0029 0.25 -0.3 33,111 - Psyr_0029 0.25 -0.9 33,111 - Psyr_0029 0.25 -1.2 33,111 - Psyr_0029 0.25 +0.1 33,111 - Psyr_0029 0.25 -0.3 33,111 - Psyr_0029 0.25 +0.4 33,111 - Psyr_0029 0.25 +1.1 33,111 - Psyr_0029 0.25 +0.4 33,111 - Psyr_0029 0.25 +0.1 33,111 - Psyr_0029 0.25 -1.2 33,287 + Psyr_0029 0.37 +0.5 33,288 - Psyr_0029 0.37 +2.1 33,288 - Psyr_0029 0.37 -0.9 33,455 + Psyr_0029 0.48 +1.5 33,455 + Psyr_0029 0.48 -1.9 33,455 + Psyr_0029 0.48 +0.5 33,455 + Psyr_0029 0.48 +0.7 33,455 + Psyr_0029 0.48 -0.2 33,455 + Psyr_0029 0.48 +0.6 33,456 - Psyr_0029 0.48 +1.3 33,456 - Psyr_0029 0.48 -0.1 33,456 - Psyr_0029 0.48 +0.7 33,456 - Psyr_0029 0.48 -0.3 33,456 - Psyr_0029 0.48 +0.3 33,456 - Psyr_0029 0.48 +0.3 33,456 - Psyr_0029 0.48 +0.3 33,456 - Psyr_0029 0.48 -0.6 33,456 - Psyr_0029 0.48 -0.3 33,473 + Psyr_0029 0.49 +0.1 33,473 + Psyr_0029 0.49 +0.6 33,474 - Psyr_0029 0.49 -0.7 33,530 + Psyr_0029 0.53 +0.3 33,530 + Psyr_0029 0.53 -0.1 33,530 + Psyr_0029 0.53 +0.5 33,530 + Psyr_0029 0.53 -0.9 33,531 - Psyr_0029 0.53 +0.4 33,531 - Psyr_0029 0.53 -1.9 33,531 - Psyr_0029 0.53 +0.9 33,531 - Psyr_0029 0.53 -0.5 33,598 + Psyr_0029 0.58 -0.6 33,598 + Psyr_0029 0.58 -0.1 33,599 - Psyr_0029 0.58 +2.1 33,599 - Psyr_0029 0.58 -0.3 33,614 + Psyr_0029 0.59 -0.9 33,644 + Psyr_0029 0.61 +1.5 33,644 + Psyr_0029 0.61 -1.6 33,645 - Psyr_0029 0.61 -0.9 33,716 + Psyr_0029 0.65 -0.2 33,716 + Psyr_0029 0.65 +0.8 33,717 - Psyr_0029 0.65 -0.8 33,722 + Psyr_0029 0.66 +1.7 33,722 + Psyr_0029 0.66 -0.3 33,722 + Psyr_0029 0.66 +0.1 33,723 - Psyr_0029 0.66 +0.2 33,723 - Psyr_0029 0.66 +1.0 33,816 - Psyr_0029 0.72 +0.3 33,864 - Psyr_0029 0.75 +1.0 33,960 - Psyr_0029 0.82 +0.8 33,986 + Psyr_0029 0.83 +0.3 33,986 + Psyr_0029 0.83 -0.4 33,986 + Psyr_0029 0.83 +0.6 33,986 + Psyr_0029 0.83 +1.4 33,986 + Psyr_0029 0.83 +1.3 33,987 - Psyr_0029 0.83 +0.5 34,117 + -0.2 34,117 + -0.1 34,118 - +0.5 34,118 - -0.1 34,238 + -0.2 34,238 + -1.4 34,238 + -0.9 34,239 - -0.0 34,239 - -1.0 34,239 - -1.9 34,245 + +0.2 34,246 - +0.2 34,246 - -0.7 34,298 + +1.5 34,319 + +0.3 34,320 - -1.4 34,334 - -0.3 34,414 + -0.4 34,524 + Psyr_0030 0.18 -0.5 34,524 + Psyr_0030 0.18 -0.2 34,525 - Psyr_0030 0.18 -0.1 34,532 + Psyr_0030 0.19 +0.3 34,609 + Psyr_0030 0.27 +0.1 34,978 + Psyr_0030 0.66 -1.4 34,978 + Psyr_0030 0.66 -1.7 34,978 + Psyr_0030 0.66 -0.9 34,978 + Psyr_0030 0.66 -0.6 34,978 + Psyr_0030 0.66 +0.4 34,978 + Psyr_0030 0.66 -0.5 34,978 + Psyr_0030 0.66 -0.7 34,979 - Psyr_0030 0.66 +1.0 35,037 + Psyr_0030 0.72 +0.1 35,037 + Psyr_0030 0.72 -0.1 35,037 + Psyr_0030 0.72 -1.6 35,037 + Psyr_0030 0.72 -0.3 35,037 + Psyr_0030 0.72 +0.1 35,037 + Psyr_0030 0.72 -0.7 35,038 - Psyr_0030 0.72 +0.1 35,038 - Psyr_0030 0.72 +0.6 35,038 - Psyr_0030 0.72 +0.1 35,038 - Psyr_0030 0.72 -0.2 35,038 - Psyr_0030 0.72 -2.0 35,169 + Psyr_0030 0.86 -0.2 35,169 + Psyr_0030 0.86 -0.2 35,172 + Psyr_0030 0.86 -0.2 35,172 + Psyr_0030 0.86 +0.3 35,172 + Psyr_0030 0.86 -0.7 35,172 + Psyr_0030 0.86 -2.1 35,172 + Psyr_0030 0.86 +0.0 35,172 + Psyr_0030 0.86 +0.1 35,172 + Psyr_0030 0.86 +0.6 35,172 + Psyr_0030 0.86 -0.7 35,173 - Psyr_0030 0.87 +2.1 35,173 - Psyr_0030 0.87 -0.4 35,173 - Psyr_0030 0.87 +0.2 35,173 - Psyr_0030 0.87 +0.4 35,173 - Psyr_0030 0.87 -0.7 35,173 - Psyr_0030 0.87 -0.9
Or see this region's nucleotide sequence