Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5997

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5996 and Pf1N1B4_5997 are separated by 87 nucleotidesPf1N1B4_5997 and Pf1N1B4_5998 are separated by 14 nucleotides Pf1N1B4_5996 - Transposase, at 447,126 to 448,178 _5996 Pf1N1B4_5997 - Taurine dioxygenase (EC 1.14.11.17), at 448,266 to 449,114 _5997 Pf1N1B4_5998 - Quinone oxidoreductase (EC 1.6.5.5), at 449,129 to 450,109 _5998 Position (kb) 448 449 450Strain fitness (log2 ratio) -2 -1 0 1at 447.344 kb on + strand, within Pf1N1B4_5996at 447.345 kb on - strand, within Pf1N1B4_5996at 447.345 kb on - strand, within Pf1N1B4_5996at 447.375 kb on - strand, within Pf1N1B4_5996at 447.544 kb on + strand, within Pf1N1B4_5996at 447.544 kb on + strand, within Pf1N1B4_5996at 447.544 kb on + strand, within Pf1N1B4_5996at 447.545 kb on - strand, within Pf1N1B4_5996at 447.545 kb on - strand, within Pf1N1B4_5996at 448.027 kb on + strand, within Pf1N1B4_5996at 448.111 kb on + strandat 448.184 kb on - strandat 448.189 kb on + strandat 448.189 kb on + strandat 448.189 kb on + strandat 448.189 kb on + strandat 448.190 kb on - strandat 448.195 kb on + strandat 448.195 kb on + strandat 448.270 kb on + strandat 448.350 kb on - strandat 448.406 kb on - strand, within Pf1N1B4_5997at 448.417 kb on + strand, within Pf1N1B4_5997at 448.418 kb on - strand, within Pf1N1B4_5997at 448.418 kb on - strand, within Pf1N1B4_5997at 448.501 kb on + strand, within Pf1N1B4_5997at 448.501 kb on + strand, within Pf1N1B4_5997at 448.502 kb on - strandat 448.594 kb on + strand, within Pf1N1B4_5997at 448.868 kb on - strand, within Pf1N1B4_5997at 449.130 kb on + strandat 449.131 kb on - strandat 449.131 kb on - strandat 449.208 kb on + strandat 449.209 kb on - strandat 449.209 kb on - strandat 449.301 kb on + strandat 449.301 kb on + strand, within Pf1N1B4_5998at 449.301 kb on + strand, within Pf1N1B4_5998at 449.301 kb on + strand, within Pf1N1B4_5998at 449.302 kb on - strand, within Pf1N1B4_5998at 449.532 kb on + strandat 449.532 kb on + strand, within Pf1N1B4_5998at 449.533 kb on - strand, within Pf1N1B4_5998at 449.533 kb on - strand, within Pf1N1B4_5998at 449.533 kb on - strand, within Pf1N1B4_5998at 449.533 kb on - strand, within Pf1N1B4_5998at 449.718 kb on + strand, within Pf1N1B4_5998at 449.824 kb on - strand, within Pf1N1B4_5998at 449.836 kb on + strand, within Pf1N1B4_5998at 449.837 kb on - strand, within Pf1N1B4_5998at 449.837 kb on - strand, within Pf1N1B4_5998at 449.853 kb on + strandat 449.854 kb on - strand, within Pf1N1B4_5998at 449.876 kb on + strand, within Pf1N1B4_5998at 449.876 kb on + strandat 449.876 kb on + strand, within Pf1N1B4_5998at 449.876 kb on + strand, within Pf1N1B4_5998at 449.876 kb on + strand, within Pf1N1B4_5998at 449.876 kb on + strandat 449.877 kb on - strand, within Pf1N1B4_5998at 449.973 kb on + strand, within Pf1N1B4_5998at 449.973 kb on + strand, within Pf1N1B4_5998at 449.974 kb on - strand, within Pf1N1B4_5998at 449.974 kb on - strand, within Pf1N1B4_5998at 449.974 kb on - strand, within Pf1N1B4_5998

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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447,344 + Pf1N1B4_5996 0.21 +0.6
447,345 - Pf1N1B4_5996 0.21 -0.1
447,345 - Pf1N1B4_5996 0.21 -0.7
447,375 - Pf1N1B4_5996 0.24 -0.7
447,544 + Pf1N1B4_5996 0.40 -0.3
447,544 + Pf1N1B4_5996 0.40 -0.7
447,544 + Pf1N1B4_5996 0.40 -0.1
447,545 - Pf1N1B4_5996 0.40 -0.8
447,545 - Pf1N1B4_5996 0.40 -0.1
448,027 + Pf1N1B4_5996 0.86 +0.5
448,111 + -0.7
448,184 - -0.7
448,189 + -0.1
448,189 + -1.4
448,189 + +0.2
448,189 + -1.1
448,190 - +0.7
448,195 + -0.6
448,195 + -0.7
448,270 + -1.1
448,350 - -0.7
448,406 - Pf1N1B4_5997 0.16 -1.6
448,417 + Pf1N1B4_5997 0.18 -0.7
448,418 - Pf1N1B4_5997 0.18 +1.5
448,418 - Pf1N1B4_5997 0.18 -0.1
448,501 + Pf1N1B4_5997 0.28 -0.3
448,501 + Pf1N1B4_5997 0.28 -0.8
448,502 - +1.6
448,594 + Pf1N1B4_5997 0.39 +0.5
448,868 - Pf1N1B4_5997 0.71 -0.5
449,130 + +0.3
449,131 - -1.5
449,131 - +0.1
449,208 + -0.5
449,209 - -0.3
449,209 - -0.7
449,301 + -0.7
449,301 + Pf1N1B4_5998 0.18 -0.3
449,301 + Pf1N1B4_5998 0.18 -0.4
449,301 + Pf1N1B4_5998 0.18 -0.4
449,302 - Pf1N1B4_5998 0.18 -0.9
449,532 + -0.7
449,532 + Pf1N1B4_5998 0.41 -0.3
449,533 - Pf1N1B4_5998 0.41 +0.6
449,533 - Pf1N1B4_5998 0.41 -0.8
449,533 - Pf1N1B4_5998 0.41 -0.8
449,533 - Pf1N1B4_5998 0.41 -1.4
449,718 + Pf1N1B4_5998 0.60 -1.1
449,824 - Pf1N1B4_5998 0.71 -0.0
449,836 + Pf1N1B4_5998 0.72 -1.4
449,837 - Pf1N1B4_5998 0.72 -0.4
449,837 - Pf1N1B4_5998 0.72 -0.7
449,853 + -0.7
449,854 - Pf1N1B4_5998 0.74 -1.2
449,876 + Pf1N1B4_5998 0.76 -2.3
449,876 + -2.1
449,876 + Pf1N1B4_5998 0.76 -0.9
449,876 + Pf1N1B4_5998 0.76 -1.4
449,876 + Pf1N1B4_5998 0.76 -0.3
449,876 + +0.9
449,877 - Pf1N1B4_5998 0.76 -1.4
449,973 + Pf1N1B4_5998 0.86 -1.4
449,973 + Pf1N1B4_5998 0.86 -1.1
449,974 - Pf1N1B4_5998 0.86 -0.5
449,974 - Pf1N1B4_5998 0.86 +0.1
449,974 - Pf1N1B4_5998 0.86 -0.7

Or see this region's nucleotide sequence