Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5099

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5098 and Pf1N1B4_5099 are separated by 145 nucleotidesPf1N1B4_5099 and Pf1N1B4_5100 are separated by 93 nucleotides Pf1N1B4_5098 - Nitrate ABC transporter, ATP-binding protein, at 5,651,956 to 5,652,747 _5098 Pf1N1B4_5099 - Proline iminopeptidase (EC 3.4.11.5), at 5,652,893 to 5,653,837 _5099 Pf1N1B4_5100 - Transcriptional regulator ahyR/asaR family, at 5,653,931 to 5,654,689 _5100 Position (kb) 5652 5653 5654Strain fitness (log2 ratio) -2 -1 0 1at 5653.207 kb on - strand, within Pf1N1B4_5099at 5653.241 kb on - strand, within Pf1N1B4_5099at 5653.528 kb on - strand, within Pf1N1B4_5099at 5653.689 kb on + strand, within Pf1N1B4_5099at 5653.690 kb on - strandat 5653.690 kb on - strand, within Pf1N1B4_5099at 5653.690 kb on - strand, within Pf1N1B4_5099at 5653.690 kb on - strand, within Pf1N1B4_5099at 5653.702 kb on - strand, within Pf1N1B4_5099at 5653.898 kb on + strandat 5654.095 kb on + strand, within Pf1N1B4_5100at 5654.125 kb on - strand, within Pf1N1B4_5100at 5654.138 kb on - strand, within Pf1N1B4_5100at 5654.335 kb on - strand, within Pf1N1B4_5100at 5654.401 kb on - strand, within Pf1N1B4_5100at 5654.436 kb on - strand, within Pf1N1B4_5100at 5654.733 kb on + strandat 5654.786 kb on - strandat 5654.786 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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5,653,207 - Pf1N1B4_5099 0.33 +1.7
5,653,241 - Pf1N1B4_5099 0.37 +0.0
5,653,528 - Pf1N1B4_5099 0.67 +0.4
5,653,689 + Pf1N1B4_5099 0.84 -0.2
5,653,690 - -0.3
5,653,690 - Pf1N1B4_5099 0.84 +0.1
5,653,690 - Pf1N1B4_5099 0.84 +0.7
5,653,690 - Pf1N1B4_5099 0.84 -0.6
5,653,702 - Pf1N1B4_5099 0.86 -0.1
5,653,898 + -0.5
5,654,095 + Pf1N1B4_5100 0.22 +0.1
5,654,125 - Pf1N1B4_5100 0.26 -0.1
5,654,138 - Pf1N1B4_5100 0.27 -1.4
5,654,335 - Pf1N1B4_5100 0.53 +0.9
5,654,401 - Pf1N1B4_5100 0.62 +0.3
5,654,436 - Pf1N1B4_5100 0.67 -2.1
5,654,733 + +0.3
5,654,786 - -0.3
5,654,786 - +0.3

Or see this region's nucleotide sequence