Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4552 and Pf1N1B4_4553 are separated by 46 nucleotides Pf1N1B4_4553 and Pf1N1B4_4554 are separated by 9 nucleotides Pf1N1B4_4554 and Pf1N1B4_4555 are separated by 127 nucleotides Pf1N1B4_4555 and Pf1N1B4_4556 are separated by 53 nucleotides
Pf1N1B4_4552 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41), at 5,020,720 to 5,021,940
_4552
Pf1N1B4_4553 - FIG00959354: hypothetical protein, at 5,021,987 to 5,024,857
_4553
Pf1N1B4_4554 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 5,024,867 to 5,025,355
_4554
Pf1N1B4_4555 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 5,025,483 to 5,025,602
_4555
Pf1N1B4_4556 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 5,025,656 to 5,026,363
_4556
Position (kb) 5021
5022
5023
5024
5025 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5021.205 kb on + strand, within Pf1N1B4_4552 at 5021.205 kb on + strand, within Pf1N1B4_4552 at 5021.205 kb on + strand, within Pf1N1B4_4552 at 5021.260 kb on + strand, within Pf1N1B4_4552 at 5021.260 kb on + strand at 5021.260 kb on + strand, within Pf1N1B4_4552 at 5021.260 kb on + strand, within Pf1N1B4_4552 at 5021.260 kb on + strand, within Pf1N1B4_4552 at 5021.261 kb on - strand, within Pf1N1B4_4552 at 5021.340 kb on + strand, within Pf1N1B4_4552 at 5021.341 kb on - strand, within Pf1N1B4_4552 at 5021.600 kb on + strand, within Pf1N1B4_4552 at 5021.679 kb on + strand, within Pf1N1B4_4552 at 5021.679 kb on + strand, within Pf1N1B4_4552 at 5021.680 kb on - strand at 5021.680 kb on - strand, within Pf1N1B4_4552 at 5021.680 kb on - strand, within Pf1N1B4_4552 at 5021.999 kb on - strand at 5022.077 kb on - strand at 5022.086 kb on + strand at 5022.786 kb on + strand, within Pf1N1B4_4553 at 5022.881 kb on + strand at 5023.370 kb on + strand, within Pf1N1B4_4553 at 5023.558 kb on + strand, within Pf1N1B4_4553 at 5023.559 kb on - strand, within Pf1N1B4_4553 at 5023.881 kb on - strand, within Pf1N1B4_4553 at 5023.980 kb on - strand at 5023.980 kb on - strand, within Pf1N1B4_4553 at 5024.391 kb on + strand, within Pf1N1B4_4553 at 5024.392 kb on - strand, within Pf1N1B4_4553 at 5024.392 kb on - strand, within Pf1N1B4_4553 at 5024.392 kb on - strand, within Pf1N1B4_4553 at 5024.488 kb on - strand at 5024.488 kb on - strand, within Pf1N1B4_4553 at 5024.615 kb on + strand at 5024.699 kb on + strand at 5024.855 kb on + strand at 5024.966 kb on + strand, within Pf1N1B4_4554 at 5024.967 kb on - strand, within Pf1N1B4_4554 at 5025.269 kb on - strand, within Pf1N1B4_4554 at 5025.324 kb on - strand at 5025.531 kb on + strand, within Pf1N1B4_4555 at 5025.532 kb on - strand, within Pf1N1B4_4555 at 5025.532 kb on - strand, within Pf1N1B4_4555 at 5025.532 kb on - strand, within Pf1N1B4_4555 at 5025.532 kb on - strand, within Pf1N1B4_4555 at 5025.644 kb on - strand at 5025.770 kb on + strand at 5025.772 kb on + strand at 5025.839 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 5,021,205 + Pf1N1B4_4552 0.40 -0.2 5,021,205 + Pf1N1B4_4552 0.40 +0.6 5,021,205 + Pf1N1B4_4552 0.40 +1.4 5,021,260 + Pf1N1B4_4552 0.44 -0.2 5,021,260 + +1.8 5,021,260 + Pf1N1B4_4552 0.44 -1.1 5,021,260 + Pf1N1B4_4552 0.44 -1.2 5,021,260 + Pf1N1B4_4552 0.44 -2.0 5,021,261 - Pf1N1B4_4552 0.44 -0.2 5,021,340 + Pf1N1B4_4552 0.51 +0.2 5,021,341 - Pf1N1B4_4552 0.51 +0.4 5,021,600 + Pf1N1B4_4552 0.72 +1.3 5,021,679 + Pf1N1B4_4552 0.79 +1.1 5,021,679 + Pf1N1B4_4552 0.79 +0.3 5,021,680 - +2.1 5,021,680 - Pf1N1B4_4552 0.79 -1.0 5,021,680 - Pf1N1B4_4552 0.79 +0.0 5,021,999 - +0.4 5,022,077 - -0.2 5,022,086 + +1.5 5,022,786 + Pf1N1B4_4553 0.28 -2.0 5,022,881 + +0.8 5,023,370 + Pf1N1B4_4553 0.48 -0.5 5,023,558 + Pf1N1B4_4553 0.55 -0.0 5,023,559 - Pf1N1B4_4553 0.55 -2.0 5,023,881 - Pf1N1B4_4553 0.66 +1.1 5,023,980 - -0.8 5,023,980 - Pf1N1B4_4553 0.69 -2.2 5,024,391 + Pf1N1B4_4553 0.84 -1.2 5,024,392 - Pf1N1B4_4553 0.84 -0.2 5,024,392 - Pf1N1B4_4553 0.84 +0.2 5,024,392 - Pf1N1B4_4553 0.84 -1.6 5,024,488 - -0.2 5,024,488 - Pf1N1B4_4553 0.87 +0.4 5,024,615 + +0.0 5,024,699 + -0.2 5,024,855 + +0.2 5,024,966 + Pf1N1B4_4554 0.20 +0.4 5,024,967 - Pf1N1B4_4554 0.20 -1.3 5,025,269 - Pf1N1B4_4554 0.82 -0.3 5,025,324 - -0.2 5,025,531 + Pf1N1B4_4555 0.40 -0.6 5,025,532 - Pf1N1B4_4555 0.41 +0.2 5,025,532 - Pf1N1B4_4555 0.41 +0.1 5,025,532 - Pf1N1B4_4555 0.41 +0.8 5,025,532 - Pf1N1B4_4555 0.41 -0.0 5,025,644 - +0.7 5,025,770 + +0.8 5,025,772 + +0.8 5,025,839 + -0.2
Or see this region's nucleotide sequence