Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1660

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1659 and Pf1N1B4_1660 are separated by 114 nucleotidesPf1N1B4_1660 and Pf1N1B4_1661 are separated by 245 nucleotides Pf1N1B4_1659 - Ferrichrome-iron receptor, at 1,899,182 to 1,901,275 _1659 Pf1N1B4_1660 - FIG00953324: hypothetical protein, at 1,901,390 to 1,901,602 _1660 Pf1N1B4_1661 - Agmatine deiminase (EC 3.5.3.12), at 1,901,848 to 1,902,954 _1661 Position (kb) 1901 1902Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1900.400 kb on - strand, within Pf1N1B4_1659at 1900.400 kb on - strand, within Pf1N1B4_1659at 1900.430 kb on + strand, within Pf1N1B4_1659at 1900.431 kb on - strand, within Pf1N1B4_1659at 1900.431 kb on - strand, within Pf1N1B4_1659at 1900.431 kb on - strand, within Pf1N1B4_1659at 1900.431 kb on - strand, within Pf1N1B4_1659at 1900.607 kb on + strand, within Pf1N1B4_1659at 1900.607 kb on + strand, within Pf1N1B4_1659at 1900.607 kb on + strand, within Pf1N1B4_1659at 1900.607 kb on + strand, within Pf1N1B4_1659at 1900.607 kb on + strand, within Pf1N1B4_1659at 1900.607 kb on + strand, within Pf1N1B4_1659at 1900.608 kb on - strand, within Pf1N1B4_1659at 1900.608 kb on - strandat 1900.608 kb on - strand, within Pf1N1B4_1659at 1900.608 kb on - strand, within Pf1N1B4_1659at 1900.608 kb on - strand, within Pf1N1B4_1659at 1900.762 kb on + strand, within Pf1N1B4_1659at 1900.763 kb on - strand, within Pf1N1B4_1659at 1900.763 kb on - strand, within Pf1N1B4_1659at 1900.775 kb on + strand, within Pf1N1B4_1659at 1900.775 kb on + strand, within Pf1N1B4_1659at 1900.775 kb on + strand, within Pf1N1B4_1659at 1900.776 kb on - strand, within Pf1N1B4_1659at 1900.776 kb on - strand, within Pf1N1B4_1659at 1900.901 kb on + strand, within Pf1N1B4_1659at 1900.901 kb on + strand, within Pf1N1B4_1659at 1900.901 kb on + strand, within Pf1N1B4_1659at 1900.901 kb on + strand, within Pf1N1B4_1659at 1900.902 kb on - strand, within Pf1N1B4_1659at 1900.902 kb on - strand, within Pf1N1B4_1659at 1900.902 kb on - strand, within Pf1N1B4_1659at 1900.902 kb on - strand, within Pf1N1B4_1659at 1901.193 kb on - strandat 1901.193 kb on - strandat 1901.195 kb on + strandat 1901.196 kb on - strandat 1901.196 kb on - strandat 1901.261 kb on - strandat 1901.261 kb on - strandat 1901.264 kb on + strandat 1901.265 kb on - strandat 1901.265 kb on - strandat 1901.265 kb on - strandat 1901.265 kb on - strandat 1901.273 kb on + strandat 1901.274 kb on - strandat 1901.322 kb on - strandat 1901.337 kb on + strandat 1901.337 kb on + strandat 1901.338 kb on - strandat 1901.368 kb on + strandat 1901.368 kb on + strandat 1901.369 kb on - strandat 1901.369 kb on - strandat 1901.392 kb on - strandat 1901.392 kb on - strandat 1901.392 kb on - strandat 1901.546 kb on - strand, within Pf1N1B4_1660at 1901.548 kb on + strand, within Pf1N1B4_1660at 1901.548 kb on + strand, within Pf1N1B4_1660at 1901.548 kb on + strand, within Pf1N1B4_1660at 1901.548 kb on + strand, within Pf1N1B4_1660at 1901.548 kb on + strand, within Pf1N1B4_1660at 1901.549 kb on - strand, within Pf1N1B4_1660at 1901.549 kb on - strand, within Pf1N1B4_1660at 1901.549 kb on - strand, within Pf1N1B4_1660at 1901.549 kb on - strand, within Pf1N1B4_1660at 1901.549 kb on - strand, within Pf1N1B4_1660at 1901.638 kb on + strandat 1901.638 kb on + strandat 1901.638 kb on + strandat 1901.638 kb on + strandat 1901.638 kb on + strandat 1901.649 kb on + strandat 1901.650 kb on - strandat 1901.699 kb on + strandat 1901.699 kb on + strandat 1901.700 kb on - strandat 1901.700 kb on - strandat 1901.796 kb on + strandat 1901.796 kb on + strandat 1901.797 kb on - strandat 1901.837 kb on + strandat 1901.838 kb on - strandat 1901.838 kb on - strandat 1902.044 kb on + strand, within Pf1N1B4_1661at 1902.045 kb on - strand, within Pf1N1B4_1661at 1902.045 kb on - strand, within Pf1N1B4_1661at 1902.045 kb on - strand, within Pf1N1B4_1661at 1902.045 kb on - strand, within Pf1N1B4_1661at 1902.266 kb on - strand, within Pf1N1B4_1661at 1902.266 kb on - strand, within Pf1N1B4_1661at 1902.266 kb on - strand, within Pf1N1B4_1661at 1902.266 kb on - strand, within Pf1N1B4_1661at 1902.285 kb on - strand, within Pf1N1B4_1661at 1902.349 kb on - strand, within Pf1N1B4_1661at 1902.349 kb on - strand, within Pf1N1B4_1661at 1902.349 kb on - strand, within Pf1N1B4_1661at 1902.349 kb on - strand, within Pf1N1B4_1661

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,900,400 - Pf1N1B4_1659 0.58 -1.2
1,900,400 - Pf1N1B4_1659 0.58 -1.1
1,900,430 + Pf1N1B4_1659 0.60 -1.1
1,900,431 - Pf1N1B4_1659 0.60 +0.2
1,900,431 - Pf1N1B4_1659 0.60 +0.8
1,900,431 - Pf1N1B4_1659 0.60 +0.5
1,900,431 - Pf1N1B4_1659 0.60 -0.1
1,900,607 + Pf1N1B4_1659 0.68 +1.3
1,900,607 + Pf1N1B4_1659 0.68 +1.1
1,900,607 + Pf1N1B4_1659 0.68 -0.7
1,900,607 + Pf1N1B4_1659 0.68 +1.2
1,900,607 + Pf1N1B4_1659 0.68 -0.2
1,900,607 + Pf1N1B4_1659 0.68 +0.8
1,900,608 - Pf1N1B4_1659 0.68 -1.7
1,900,608 - -0.2
1,900,608 - Pf1N1B4_1659 0.68 -0.7
1,900,608 - Pf1N1B4_1659 0.68 -0.2
1,900,608 - Pf1N1B4_1659 0.68 -1.6
1,900,762 + Pf1N1B4_1659 0.75 -0.6
1,900,763 - Pf1N1B4_1659 0.76 +1.5
1,900,763 - Pf1N1B4_1659 0.76 -0.6
1,900,775 + Pf1N1B4_1659 0.76 +0.8
1,900,775 + Pf1N1B4_1659 0.76 +1.8
1,900,775 + Pf1N1B4_1659 0.76 +0.9
1,900,776 - Pf1N1B4_1659 0.76 +0.2
1,900,776 - Pf1N1B4_1659 0.76 +1.2
1,900,901 + Pf1N1B4_1659 0.82 -1.1
1,900,901 + Pf1N1B4_1659 0.82 -0.3
1,900,901 + Pf1N1B4_1659 0.82 +1.1
1,900,901 + Pf1N1B4_1659 0.82 -0.0
1,900,902 - Pf1N1B4_1659 0.82 -0.0
1,900,902 - Pf1N1B4_1659 0.82 -0.2
1,900,902 - Pf1N1B4_1659 0.82 -2.1
1,900,902 - Pf1N1B4_1659 0.82 +0.6
1,901,193 - -0.6
1,901,193 - +0.2
1,901,195 + +1.2
1,901,196 - -1.6
1,901,196 - +0.4
1,901,261 - +0.5
1,901,261 - -0.1
1,901,264 + -0.4
1,901,265 - -0.2
1,901,265 - -2.1
1,901,265 - +0.1
1,901,265 - -0.2
1,901,273 + +0.2
1,901,274 - -0.1
1,901,322 - -0.5
1,901,337 + +0.2
1,901,337 + -0.1
1,901,338 - -0.4
1,901,368 + +0.3
1,901,368 + +0.2
1,901,369 - +0.4
1,901,369 - -0.7
1,901,392 - -1.4
1,901,392 - +2.3
1,901,392 - -2.1
1,901,546 - Pf1N1B4_1660 0.73 +0.8
1,901,548 + Pf1N1B4_1660 0.74 -0.4
1,901,548 + Pf1N1B4_1660 0.74 -1.1
1,901,548 + Pf1N1B4_1660 0.74 -1.4
1,901,548 + Pf1N1B4_1660 0.74 -0.7
1,901,548 + Pf1N1B4_1660 0.74 +0.8
1,901,549 - Pf1N1B4_1660 0.75 -1.0
1,901,549 - Pf1N1B4_1660 0.75 -0.8
1,901,549 - Pf1N1B4_1660 0.75 -0.6
1,901,549 - Pf1N1B4_1660 0.75 +0.3
1,901,549 - Pf1N1B4_1660 0.75 +0.3
1,901,638 + -0.5
1,901,638 + -0.2
1,901,638 + +0.9
1,901,638 + -0.5
1,901,638 + -0.1
1,901,649 + -0.2
1,901,650 - +0.4
1,901,699 + -0.1
1,901,699 + +2.5
1,901,700 - +0.2
1,901,700 - +0.2
1,901,796 + -0.9
1,901,796 + -0.2
1,901,797 - +3.8
1,901,837 + +0.2
1,901,838 - -0.6
1,901,838 - +0.2
1,902,044 + Pf1N1B4_1661 0.18 +0.6
1,902,045 - Pf1N1B4_1661 0.18 -0.8
1,902,045 - Pf1N1B4_1661 0.18 -1.1
1,902,045 - Pf1N1B4_1661 0.18 +0.1
1,902,045 - Pf1N1B4_1661 0.18 +0.4
1,902,266 - Pf1N1B4_1661 0.38 +0.2
1,902,266 - Pf1N1B4_1661 0.38 +0.2
1,902,266 - Pf1N1B4_1661 0.38 -0.9
1,902,266 - Pf1N1B4_1661 0.38 +0.1
1,902,285 - Pf1N1B4_1661 0.39 -2.0
1,902,349 - Pf1N1B4_1661 0.45 -0.4
1,902,349 - Pf1N1B4_1661 0.45 +1.2
1,902,349 - Pf1N1B4_1661 0.45 -1.1
1,902,349 - Pf1N1B4_1661 0.45 +0.5

Or see this region's nucleotide sequence