Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1420

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1418 and Pf1N1B4_1419 are separated by 101 nucleotidesPf1N1B4_1419 and Pf1N1B4_1420 are separated by 182 nucleotidesPf1N1B4_1420 and Pf1N1B4_1421 are separated by 107 nucleotides Pf1N1B4_1418 - Epoxyqueuosine (oQ) reductase QueG, at 1,627,385 to 1,628,449 _1418 Pf1N1B4_1419 - putative membrane protein, at 1,628,551 to 1,629,162 _1419 Pf1N1B4_1420 - 3'-to-5' oligoribonuclease (orn), at 1,629,345 to 1,629,887 _1420 Pf1N1B4_1421 - Ribosome small subunit-stimulated GTPase EngC, at 1,629,995 to 1,631,026 _1421 Position (kb) 1629 1630Strain fitness (log2 ratio) -1 0 1 2 3at 1628.388 kb on - strandat 1628.447 kb on + strandat 1628.448 kb on - strandat 1628.539 kb on - strandat 1628.567 kb on + strandat 1628.568 kb on - strandat 1628.568 kb on - strandat 1628.568 kb on - strandat 1628.663 kb on - strand, within Pf1N1B4_1419at 1628.672 kb on + strand, within Pf1N1B4_1419at 1628.672 kb on + strand, within Pf1N1B4_1419at 1628.672 kb on + strand, within Pf1N1B4_1419at 1628.673 kb on - strand, within Pf1N1B4_1419at 1628.673 kb on - strand, within Pf1N1B4_1419at 1628.673 kb on - strand, within Pf1N1B4_1419at 1628.673 kb on - strand, within Pf1N1B4_1419at 1628.673 kb on - strand, within Pf1N1B4_1419at 1628.687 kb on + strand, within Pf1N1B4_1419at 1628.721 kb on - strand, within Pf1N1B4_1419at 1628.737 kb on + strand, within Pf1N1B4_1419at 1628.737 kb on + strand, within Pf1N1B4_1419at 1628.738 kb on - strand, within Pf1N1B4_1419at 1628.819 kb on - strand, within Pf1N1B4_1419at 1628.975 kb on + strand, within Pf1N1B4_1419at 1628.976 kb on - strand, within Pf1N1B4_1419at 1628.976 kb on - strand, within Pf1N1B4_1419at 1628.976 kb on - strand, within Pf1N1B4_1419at 1628.976 kb on - strand, within Pf1N1B4_1419at 1629.146 kb on + strandat 1629.146 kb on + strandat 1629.146 kb on + strandat 1629.147 kb on - strandat 1629.195 kb on - strandat 1629.202 kb on + strandat 1629.203 kb on - strandat 1629.237 kb on - strandat 1629.237 kb on - strandat 1629.274 kb on + strandat 1629.274 kb on + strandat 1629.274 kb on + strandat 1629.280 kb on + strandat 1629.280 kb on + strandat 1629.280 kb on + strandat 1629.280 kb on + strandat 1629.280 kb on + strandat 1629.281 kb on - strandat 1629.281 kb on - strandat 1629.281 kb on - strandat 1629.906 kb on - strandat 1629.906 kb on - strandat 1629.918 kb on + strandat 1629.944 kb on + strandat 1629.944 kb on + strandat 1629.965 kb on + strandat 1629.965 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,628,388 - -0.8
1,628,447 + +0.1
1,628,448 - +1.0
1,628,539 - -1.2
1,628,567 + +0.6
1,628,568 - -0.3
1,628,568 - -0.6
1,628,568 - +0.2
1,628,663 - Pf1N1B4_1419 0.18 +0.0
1,628,672 + Pf1N1B4_1419 0.20 +1.1
1,628,672 + Pf1N1B4_1419 0.20 +1.2
1,628,672 + Pf1N1B4_1419 0.20 +0.6
1,628,673 - Pf1N1B4_1419 0.20 +1.3
1,628,673 - Pf1N1B4_1419 0.20 +0.5
1,628,673 - Pf1N1B4_1419 0.20 +1.6
1,628,673 - Pf1N1B4_1419 0.20 +0.1
1,628,673 - Pf1N1B4_1419 0.20 -0.0
1,628,687 + Pf1N1B4_1419 0.22 +0.9
1,628,721 - Pf1N1B4_1419 0.28 +0.0
1,628,737 + Pf1N1B4_1419 0.30 -0.4
1,628,737 + Pf1N1B4_1419 0.30 +0.2
1,628,738 - Pf1N1B4_1419 0.31 +1.0
1,628,819 - Pf1N1B4_1419 0.44 +1.6
1,628,975 + Pf1N1B4_1419 0.69 +0.6
1,628,976 - Pf1N1B4_1419 0.69 +0.5
1,628,976 - Pf1N1B4_1419 0.69 -1.0
1,628,976 - Pf1N1B4_1419 0.69 -0.5
1,628,976 - Pf1N1B4_1419 0.69 +1.5
1,629,146 + -1.0
1,629,146 + -1.0
1,629,146 + +1.6
1,629,147 - +0.8
1,629,195 - +0.6
1,629,202 + +1.8
1,629,203 - -0.1
1,629,237 - +0.8
1,629,237 - -0.5
1,629,274 + -0.2
1,629,274 + -0.3
1,629,274 + +0.1
1,629,280 + +0.2
1,629,280 + +0.6
1,629,280 + -0.6
1,629,280 + -0.4
1,629,280 + -0.4
1,629,281 - -0.1
1,629,281 - -1.0
1,629,281 - -0.6
1,629,906 - +0.8
1,629,906 - -0.4
1,629,918 + -0.7
1,629,944 + +1.6
1,629,944 + +2.9
1,629,965 + -0.3
1,629,965 + -1.0

Or see this region's nucleotide sequence