Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16940

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,704,922	+		LRK54_RS16935	0.71	+0.2
3,704,922	+		LRK54_RS16935	0.71	-0.7
3,704,922	+		LRK54_RS16935	0.71	-3.2
3,704,922	+		LRK54_RS16935	0.71	-1.0
3,704,923	-		LRK54_RS16935	0.71	+0.3
3,704,923	-		LRK54_RS16935	0.71	-1.3
3,704,923	-		LRK54_RS16935	0.71	-1.0
3,704,923	-		LRK54_RS16935	0.71	-0.7
3,704,923	-		LRK54_RS16935	0.71	-0.2
3,705,117	+		LRK54_RS16935	0.79	+0.7
3,705,363	+		LRK54_RS16935	0.88	-2.9
3,705,363	+		LRK54_RS16935	0.88	-1.3
3,705,363	+		LRK54_RS16935	0.88	+0.9
3,705,363	+		LRK54_RS16935	0.88	-0.6
3,705,363	+		LRK54_RS16935	0.88	-2.1
3,705,363	+		LRK54_RS16935	0.88	-0.1
3,705,363	+		LRK54_RS16935	0.88	-2.4
3,705,364	-		LRK54_RS16935	0.88	-0.2
3,705,364	-		LRK54_RS16935	0.88	-1.2
3,705,364	-		LRK54_RS16935	0.88	-0.6
3,705,364	-		LRK54_RS16935	0.88	-0.5
3,705,364	-		LRK54_RS16935	0.88	+0.7
3,705,567	+				+0.3
3,705,567	+				+0.3
3,705,567	+				-2.3
3,705,567	+				+0.4
3,705,567	+				+0.3
3,705,567	+				-0.3
3,705,567	+				-1.0
3,705,567	+				-1.4
3,705,567	+				-0.1
3,705,568	-				+0.7
3,705,568	-				-1.1
3,705,568	-				-1.5
3,705,568	-				-0.5
3,705,568	-				-0.1
3,705,568	-				-1.1
3,705,568	-				-2.0
3,705,683	+				-1.0
3,705,683	+				+0.2
3,705,683	+				-0.2
3,705,683	+				+0.0
3,705,683	+				-1.6
3,705,684	-				-0.9
3,705,684	-				-0.7
3,705,684	-				-3.0
3,705,687	+				+0.6
3,705,687	+				+0.6
3,705,687	+				-0.5
3,705,687	+				-1.1
3,705,687	+				+0.3
3,705,687	+				-0.2
3,705,687	+				-0.2
3,705,687	+				+0.3
3,705,687	+				+0.2
3,705,687	+				-0.2
3,705,687	+				-0.4
3,705,687	+				-0.5
3,705,687	+				-0.5
3,705,687	+				+0.3
3,705,687	+				-0.0
3,705,687	+				-0.2
3,705,688	-				-0.8
3,705,688	-				-1.2
3,705,688	-				-0.8
3,705,688	-				-1.2
3,705,688	-				-0.9
3,705,688	-				-1.5
3,705,688	-				-2.3
3,705,688	-				-1.4
3,705,688	-				-1.3
3,705,688	-				-0.3
3,705,688	-				-0.5
3,705,688	-				-0.2
3,705,688	-				-0.4
3,705,688	-				-0.7
3,705,688	-				-1.4
3,705,688	-				-0.8
3,705,688	-				-2.0
3,705,688	-				-0.2
3,705,688	-				-1.7
3,705,747	+				-1.0
3,705,747	+				+1.3
3,705,747	+				+0.2
3,705,747	+				+0.5
3,705,747	+				+0.4
3,705,747	+				-0.1
3,705,747	+				+0.6
3,705,747	+				+0.4
3,705,747	+				+1.4
3,705,747	+				-0.7
3,705,747	+				-0.1
3,705,747	+				+0.2
3,705,747	+				-0.7
3,705,747	+				+0.2
3,705,747	+				+1.5
3,705,747	+				-0.6
3,705,747	+				-0.4
3,705,747	+				+0.6
3,705,747	+				+0.5
3,705,747	+				-2.4
3,705,747	+				-0.0
3,705,747	+				-0.6
3,705,747	+				-0.2
3,705,747	+				+0.4
3,705,747	+				-0.6
3,705,747	+				+0.9
3,705,747	+				-1.8
3,705,747	+				-1.0
3,705,747	+				-1.1
3,705,747	+				-0.4
3,705,747	+				+1.2
3,705,747	+				-1.0
3,705,747	+				+0.0
3,705,747	+				+0.5
3,705,747	+				+0.2
3,705,747	+				+1.5
3,705,747	+				-0.3
3,705,747	+				-0.0
3,705,747	+				-0.4
3,705,747	+				-0.6
3,705,747	+				-0.1
3,705,748	-				-0.6
3,705,748	-				-1.3
3,705,748	-				-1.3
3,705,748	-				-2.9
3,705,748	-				-0.2
3,705,748	-				-0.4
3,705,748	-				-0.8
3,705,748	-				-0.6
3,705,748	-				-2.5
3,705,748	-				-1.4
3,705,748	-				-0.8
3,705,748	-				-0.6
3,705,748	-				-1.5
3,705,748	-				-2.3
3,705,748	-				-0.3
3,705,748	-				-0.9
3,705,748	-				+0.8
3,705,748	-				-1.5
3,705,748	-				-1.8
3,705,748	-				-0.0
3,705,748	-				-0.6
3,705,748	-				-2.0
3,705,748	-				-0.1
3,705,748	-				-1.1
3,705,748	-				-1.6
3,705,748	-				-0.5
3,705,748	-				-0.8
3,705,748	-				-0.6
3,705,748	-				-1.8
3,705,748	-				-1.1
3,705,748	-				-0.3
3,705,863	+				-1.5
3,705,957	+		LRK54_RS16940	0.17	+0.3
3,705,957	+		LRK54_RS16940	0.17	+0.8
3,705,957	+		LRK54_RS16940	0.17	-2.2
3,705,957	+		LRK54_RS16940	0.17	+0.5
3,705,957	+		LRK54_RS16940	0.17	-0.8
3,705,957	+		LRK54_RS16940	0.17	-0.6
3,705,957	+		LRK54_RS16940	0.17	-0.2
3,705,957	+		LRK54_RS16940	0.17	-0.2
3,705,958	-		LRK54_RS16940	0.17	-1.7
3,705,958	-		LRK54_RS16940	0.17	+0.1
3,705,990	+		LRK54_RS16940	0.22	+0.3
3,705,990	+		LRK54_RS16940	0.22	-1.2
3,706,086	+		LRK54_RS16940	0.38	-1.3
3,706,086	+		LRK54_RS16940	0.38	-2.0
3,706,086	+		LRK54_RS16940	0.38	+0.8
3,706,086	+		LRK54_RS16940	0.38	-0.9
3,706,086	+		LRK54_RS16940	0.38	-0.5
3,706,086	+		LRK54_RS16940	0.38	-3.6
3,706,086	+		LRK54_RS16940	0.38	-1.4
3,706,086	+		LRK54_RS16940	0.38	-1.6
3,706,086	+		LRK54_RS16940	0.38	-0.9
3,706,086	+		LRK54_RS16940	0.38	-0.4
3,706,086	+		LRK54_RS16940	0.38	-1.8
3,706,086	+		LRK54_RS16940	0.38	-0.2
3,706,086	+		LRK54_RS16940	0.38	-2.0
3,706,086	+		LRK54_RS16940	0.38	-2.1
3,706,087	-		LRK54_RS16940	0.38	-0.6
3,706,087	-		LRK54_RS16940	0.38	-2.1
3,706,087	-		LRK54_RS16940	0.38	+0.8
3,706,098	+		LRK54_RS16940	0.40	-2.8
3,706,098	+		LRK54_RS16940	0.40	-2.7
3,706,098	+		LRK54_RS16940	0.40	-2.4
3,706,098	+		LRK54_RS16940	0.40	-2.5
3,706,098	+		LRK54_RS16940	0.40	-1.2
3,706,098	+		LRK54_RS16940	0.40	+0.3
3,706,098	+		LRK54_RS16940	0.40	+0.8
3,706,098	+		LRK54_RS16940	0.40	-1.8
3,706,098	+		LRK54_RS16940	0.40	-0.4
3,706,098	+		LRK54_RS16940	0.40	-1.6
3,706,098	+		LRK54_RS16940	0.40	-2.8
3,706,099	-		LRK54_RS16940	0.40	-0.4
3,706,099	-		LRK54_RS16940	0.40	+0.8
3,706,099	-		LRK54_RS16940	0.40	-2.5
3,706,099	-		LRK54_RS16940	0.40	+1.1
3,706,099	-		LRK54_RS16940	0.40	+1.1
3,706,341	+		LRK54_RS16940	0.80	-0.9
3,706,341	+		LRK54_RS16940	0.80	-1.0
3,706,341	+		LRK54_RS16940	0.80	+0.6
3,706,341	+		LRK54_RS16940	0.80	+0.3
3,706,341	+		LRK54_RS16940	0.80	-2.2
3,706,341	+		LRK54_RS16940	0.80	-2.1
3,706,341	+		LRK54_RS16940	0.80	-2.0
3,706,341	+		LRK54_RS16940	0.80	-0.4
3,706,341	+		LRK54_RS16940	0.80	-0.6
3,706,341	+		LRK54_RS16940	0.80	-0.9
3,706,341	+		LRK54_RS16940	0.80	-1.9
3,706,342	-		LRK54_RS16940	0.80	+0.3
3,706,380	-		LRK54_RS16940	0.86	-0.5
3,707,057	+		LRK54_RS16945	0.89	+0.3
3,707,057	+		LRK54_RS16945	0.89	+0.0
3,707,057	+		LRK54_RS16945	0.89	-0.2
3,707,057	+		LRK54_RS16945	0.89	+0.2
3,707,057	+		LRK54_RS16945	0.89	-1.1
3,707,057	+		LRK54_RS16945	0.89	-0.5
3,707,057	+		LRK54_RS16945	0.89	-0.0
3,707,057	+		LRK54_RS16945	0.89	+0.6
3,707,057	+		LRK54_RS16945	0.89	+1.2
3,707,057	+		LRK54_RS16945	0.89	+0.4
3,707,057	+		LRK54_RS16945	0.89	+1.5
3,707,057	+		LRK54_RS16945	0.89	+0.6
3,707,058	-		LRK54_RS16945	0.89	-0.6
3,707,453	+		LRK54_RS16950	0.11	-1.7
3,707,453	+		LRK54_RS16950	0.11	-0.6
3,707,453	+		LRK54_RS16950	0.11	-0.1
3,707,453	+		LRK54_RS16950	0.11	-0.7
3,707,453	+		LRK54_RS16950	0.11	-0.6
3,707,454	-		LRK54_RS16950	0.11	-1.3
3,707,454	-		LRK54_RS16950	0.11	+0.2
3,707,454	-		LRK54_RS16950	0.11	+0.0