Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05515

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS05510 and HSERO_RS05515 are separated by 76 nucleotidesHSERO_RS05515 and HSERO_RS05520 are separated by 353 nucleotides HSERO_RS05510: HSERO_RS05510 - glucose-6-phosphate 1-dehydrogenase, at 1,247,122 to 1,248,588 _RS05510 HSERO_RS05515: HSERO_RS05515 - glucose-6-phosphate isomerase, at 1,248,665 to 1,250,329 _RS05515 HSERO_RS05520: HSERO_RS05520 - phosphogluconate dehydratase, at 1,250,683 to 1,252,554 _RS05520 Position (kb) 1248 1249 1250 1251Strain fitness (log2 ratio) -3 -2 -1 0 1at 1250.012 kb on + strand, within HSERO_RS05515at 1250.616 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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1,250,012 + HSERO_RS05515 0.81 -3.7
1,250,616 - +1.1

Or see this region's nucleotide sequence