Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07560

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07555 and BPHYT_RS07560 are separated by 25 nucleotidesBPHYT_RS07560 and BPHYT_RS07565 are separated by 62 nucleotides BPHYT_RS07555: BPHYT_RS07555 - Histidine ammonia-lyase (EC 4.3.1.3) (from data), at 1,717,210 to 1,718,730 _RS07555 BPHYT_RS07560: BPHYT_RS07560 - histidine utilization repressor, at 1,718,756 to 1,719,451 _RS07560 BPHYT_RS07565: BPHYT_RS07565 - urocanate hydratase, at 1,719,514 to 1,721,202 _RS07565 Position (kb) 1718 1719 1720Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1717.970 kb on - strand, within BPHYT_RS07555at 1719.944 kb on - strand, within BPHYT_RS07565at 1719.977 kb on - strand, within BPHYT_RS07565

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,717,970 - BPHYT_RS07555 0.50 -5.5
1,719,944 - BPHYT_RS07565 0.25 -4.6
1,719,977 - BPHYT_RS07565 0.27 -5.1

Or see this region's nucleotide sequence