Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29685

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29675 and AO356_29680 are separated by 10 nucleotidesAO356_29680 and AO356_29685 are separated by 39 nucleotidesAO356_29685 and AO356_29690 are separated by 144 nucleotidesAO356_29690 and AO356_29695 overlap by 8 nucleotides AO356_29675: AO356_29675 - ABC transporter permease, at 6,903,583 to 6,904,461 _29675 AO356_29680: AO356_29680 - ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA, at 6,904,472 to 6,905,236 _29680 AO356_29685: AO356_29685 - ABC transporter substrate-binding protein, at 6,905,276 to 6,906,100 _29685 AO356_29690: AO356_29690 - polysaccharide deacetylase, at 6,906,245 to 6,907,087 _29690 AO356_29695: AO356_29695 - polysaccharide deacetylase, at 6,907,080 to 6,907,964 _29695 Position (kb) 6905 6906 6907Strain fitness (log2 ratio) -1 0 1at 6904.504 kb on + strandat 6904.508 kb on + strandat 6905.178 kb on + strandat 6905.181 kb on + strandat 6905.181 kb on + strandat 6905.181 kb on + strandat 6905.184 kb on + strandat 6905.454 kb on - strand, within AO356_29685at 6905.642 kb on + strand, within AO356_29685at 6905.906 kb on + strand, within AO356_29685at 6905.906 kb on + strand, within AO356_29685at 6905.906 kb on + strand, within AO356_29685at 6905.907 kb on - strand, within AO356_29685at 6905.907 kb on - strand, within AO356_29685at 6905.907 kb on - strand, within AO356_29685at 6906.704 kb on + strand, within AO356_29690at 6906.737 kb on + strand, within AO356_29690at 6906.737 kb on + strand, within AO356_29690at 6906.737 kb on + strand, within AO356_29690at 6906.738 kb on - strand, within AO356_29690at 6906.822 kb on - strand, within AO356_29690at 6906.860 kb on - strand, within AO356_29690at 6906.903 kb on - strand, within AO356_29690at 6906.903 kb on - strand, within AO356_29690at 6906.964 kb on + strand, within AO356_29690

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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6,904,504 + -0.3
6,904,508 + +0.4
6,905,178 + +0.1
6,905,181 + +0.1
6,905,181 + -0.3
6,905,181 + +0.3
6,905,184 + -0.2
6,905,454 - AO356_29685 0.22 +0.1
6,905,642 + AO356_29685 0.44 -0.3
6,905,906 + AO356_29685 0.76 -0.0
6,905,906 + AO356_29685 0.76 -0.5
6,905,906 + AO356_29685 0.76 +0.4
6,905,907 - AO356_29685 0.76 +0.2
6,905,907 - AO356_29685 0.76 -0.5
6,905,907 - AO356_29685 0.76 -0.6
6,906,704 + AO356_29690 0.54 -0.2
6,906,737 + AO356_29690 0.58 +0.6
6,906,737 + AO356_29690 0.58 +1.0
6,906,737 + AO356_29690 0.58 +0.3
6,906,738 - AO356_29690 0.58 +0.9
6,906,822 - AO356_29690 0.68 -0.1
6,906,860 - AO356_29690 0.73 -0.4
6,906,903 - AO356_29690 0.78 +0.1
6,906,903 - AO356_29690 0.78 +0.5
6,906,964 + AO356_29690 0.85 -0.2

Or see this region's nucleotide sequence