Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27350

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27345 and AO356_27350 are separated by 106 nucleotidesAO356_27350 and AO356_27355 are separated by 237 nucleotides AO356_27345: AO356_27345 - phenol degradation protein meta, at 6,232,271 to 6,233,137 _27345 AO356_27350: AO356_27350 - globin, at 6,233,244 to 6,233,768 _27350 AO356_27355: AO356_27355 - amidase, at 6,234,006 to 6,235,520 _27355 Position (kb) 6233 6234Strain fitness (log2 ratio) -1 0 1at 6232.421 kb on + strand, within AO356_27345at 6232.422 kb on - strand, within AO356_27345at 6232.422 kb on - strand, within AO356_27345at 6232.582 kb on - strand, within AO356_27345at 6232.582 kb on - strand, within AO356_27345at 6232.632 kb on - strand, within AO356_27345at 6232.632 kb on - strand, within AO356_27345at 6232.680 kb on - strand, within AO356_27345at 6232.697 kb on + strand, within AO356_27345at 6232.899 kb on - strand, within AO356_27345at 6233.152 kb on - strandat 6233.167 kb on + strandat 6233.168 kb on - strandat 6233.286 kb on + strandat 6233.286 kb on + strandat 6233.287 kb on - strandat 6233.316 kb on + strand, within AO356_27350at 6233.317 kb on - strand, within AO356_27350at 6233.384 kb on + strand, within AO356_27350at 6233.384 kb on + strand, within AO356_27350at 6233.385 kb on - strand, within AO356_27350at 6233.385 kb on - strand, within AO356_27350at 6233.463 kb on + strand, within AO356_27350at 6233.464 kb on - strand, within AO356_27350at 6233.464 kb on - strand, within AO356_27350at 6233.464 kb on - strand, within AO356_27350at 6233.563 kb on - strand, within AO356_27350at 6233.780 kb on - strandat 6233.883 kb on + strandat 6234.064 kb on + strandat 6234.065 kb on - strandat 6234.232 kb on - strand, within AO356_27355at 6234.232 kb on - strand, within AO356_27355at 6234.299 kb on + strand, within AO356_27355at 6234.300 kb on - strand, within AO356_27355at 6234.300 kb on - strand, within AO356_27355at 6234.300 kb on - strand, within AO356_27355at 6234.300 kb on - strand, within AO356_27355at 6234.435 kb on + strand, within AO356_27355at 6234.458 kb on + strand, within AO356_27355at 6234.459 kb on - strand, within AO356_27355at 6234.459 kb on - strand, within AO356_27355at 6234.459 kb on - strand, within AO356_27355at 6234.635 kb on + strand, within AO356_27355at 6234.654 kb on + strand, within AO356_27355

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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6,232,421 + AO356_27345 0.17 -0.2
6,232,422 - AO356_27345 0.17 +0.6
6,232,422 - AO356_27345 0.17 +0.1
6,232,582 - AO356_27345 0.36 -0.3
6,232,582 - AO356_27345 0.36 -0.4
6,232,632 - AO356_27345 0.42 +0.6
6,232,632 - AO356_27345 0.42 -0.2
6,232,680 - AO356_27345 0.47 +0.3
6,232,697 + AO356_27345 0.49 +0.3
6,232,899 - AO356_27345 0.72 +0.1
6,233,152 - +1.0
6,233,167 + -0.0
6,233,168 - +0.2
6,233,286 + -0.5
6,233,286 + +0.1
6,233,287 - +0.5
6,233,316 + AO356_27350 0.14 -0.0
6,233,317 - AO356_27350 0.14 -1.4
6,233,384 + AO356_27350 0.27 +0.1
6,233,384 + AO356_27350 0.27 -0.6
6,233,385 - AO356_27350 0.27 -0.2
6,233,385 - AO356_27350 0.27 -0.3
6,233,463 + AO356_27350 0.42 -0.0
6,233,464 - AO356_27350 0.42 +0.2
6,233,464 - AO356_27350 0.42 +0.7
6,233,464 - AO356_27350 0.42 -0.3
6,233,563 - AO356_27350 0.61 -1.2
6,233,780 - -0.0
6,233,883 + +0.0
6,234,064 + +0.2
6,234,065 - -0.4
6,234,232 - AO356_27355 0.15 +0.7
6,234,232 - AO356_27355 0.15 -0.2
6,234,299 + AO356_27355 0.19 -0.5
6,234,300 - AO356_27355 0.19 -1.2
6,234,300 - AO356_27355 0.19 -0.3
6,234,300 - AO356_27355 0.19 -1.1
6,234,300 - AO356_27355 0.19 +0.7
6,234,435 + AO356_27355 0.28 +0.3
6,234,458 + AO356_27355 0.30 -0.2
6,234,459 - AO356_27355 0.30 -0.9
6,234,459 - AO356_27355 0.30 -1.2
6,234,459 - AO356_27355 0.30 +0.7
6,234,635 + AO356_27355 0.42 +0.6
6,234,654 + AO356_27355 0.43 -0.2

Or see this region's nucleotide sequence