Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16415

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16410 and AO356_16415 are separated by 51 nucleotidesAO356_16415 and AO356_16420 are separated by 48 nucleotidesAO356_16420 and AO356_16425 overlap by 4 nucleotides AO356_16410: AO356_16410 - chemotaxis protein, at 3,707,922 to 3,710,108 _16410 AO356_16415: AO356_16415 - protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO, at 3,710,160 to 3,712,385 _16415 AO356_16420: AO356_16420 - histidinol phosphatase, at 3,712,434 to 3,713,225 _16420 AO356_16425: AO356_16425 - ABC transporter permease, at 3,713,222 to 3,714,238 _16425 Position (kb) 3710 3711 3712 3713Strain fitness (log2 ratio) -2 -1 0 1 2at 3709.220 kb on + strand, within AO356_16410at 3709.220 kb on + strand, within AO356_16410at 3709.221 kb on - strand, within AO356_16410at 3709.221 kb on - strand, within AO356_16410at 3709.272 kb on - strand, within AO356_16410at 3709.272 kb on - strand, within AO356_16410at 3709.545 kb on - strand, within AO356_16410at 3709.899 kb on + strandat 3709.899 kb on + strandat 3709.899 kb on + strandat 3709.900 kb on - strandat 3710.086 kb on + strandat 3710.087 kb on - strandat 3710.160 kb on - strandat 3710.219 kb on + strandat 3710.219 kb on + strandat 3710.220 kb on - strandat 3710.220 kb on - strandat 3710.241 kb on - strandat 3710.241 kb on - strandat 3710.241 kb on - strandat 3710.241 kb on - strandat 3710.241 kb on - strandat 3710.283 kb on + strandat 3710.283 kb on + strandat 3710.284 kb on - strandat 3710.284 kb on - strandat 3710.284 kb on - strandat 3710.316 kb on + strandat 3710.317 kb on - strandat 3710.317 kb on - strandat 3710.331 kb on + strandat 3710.348 kb on + strandat 3710.348 kb on + strandat 3710.349 kb on - strandat 3710.349 kb on - strandat 3710.384 kb on + strand, within AO356_16415at 3710.384 kb on + strand, within AO356_16415at 3710.384 kb on + strand, within AO356_16415at 3710.384 kb on + strand, within AO356_16415at 3710.385 kb on - strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.611 kb on - strand, within AO356_16415at 3710.611 kb on - strand, within AO356_16415at 3710.611 kb on - strand, within AO356_16415at 3710.611 kb on - strand, within AO356_16415at 3710.611 kb on - strand, within AO356_16415at 3710.611 kb on - strand, within AO356_16415at 3710.611 kb on - strand, within AO356_16415at 3710.612 kb on + strand, within AO356_16415at 3710.654 kb on + strand, within AO356_16415at 3710.654 kb on + strand, within AO356_16415at 3710.654 kb on + strand, within AO356_16415at 3710.654 kb on + strand, within AO356_16415at 3710.655 kb on - strand, within AO356_16415at 3710.655 kb on - strand, within AO356_16415at 3710.711 kb on + strand, within AO356_16415at 3710.711 kb on + strand, within AO356_16415at 3710.712 kb on - strand, within AO356_16415at 3710.738 kb on + strand, within AO356_16415at 3710.738 kb on + strand, within AO356_16415at 3710.738 kb on + strand, within AO356_16415at 3710.739 kb on - strand, within AO356_16415at 3710.739 kb on - strand, within AO356_16415at 3710.739 kb on - strand, within AO356_16415at 3710.768 kb on + strand, within AO356_16415at 3710.769 kb on - strand, within AO356_16415at 3710.769 kb on - strand, within AO356_16415at 3710.769 kb on - strand, within AO356_16415at 3710.854 kb on - strand, within AO356_16415at 3710.854 kb on - strand, within AO356_16415at 3710.937 kb on - strand, within AO356_16415at 3710.970 kb on + strand, within AO356_16415at 3710.970 kb on + strand, within AO356_16415at 3710.971 kb on - strand, within AO356_16415at 3710.985 kb on + strand, within AO356_16415at 3710.985 kb on + strand, within AO356_16415at 3710.985 kb on + strand, within AO356_16415at 3710.986 kb on - strand, within AO356_16415at 3710.986 kb on - strand, within AO356_16415at 3710.986 kb on - strand, within AO356_16415at 3710.986 kb on - strand, within AO356_16415at 3710.986 kb on - strand, within AO356_16415at 3710.986 kb on - strand, within AO356_16415at 3711.069 kb on + strand, within AO356_16415at 3711.069 kb on + strand, within AO356_16415at 3711.070 kb on - strand, within AO356_16415at 3711.099 kb on + strand, within AO356_16415at 3711.099 kb on + strand, within AO356_16415at 3711.100 kb on - strand, within AO356_16415at 3711.100 kb on - strand, within AO356_16415at 3711.253 kb on + strand, within AO356_16415at 3711.253 kb on + strand, within AO356_16415at 3711.253 kb on + strand, within AO356_16415at 3711.254 kb on - strand, within AO356_16415at 3711.548 kb on + strand, within AO356_16415at 3711.549 kb on - strand, within AO356_16415at 3711.720 kb on + strand, within AO356_16415at 3711.720 kb on + strand, within AO356_16415at 3711.720 kb on + strand, within AO356_16415at 3711.720 kb on + strand, within AO356_16415at 3711.720 kb on + strand, within AO356_16415at 3711.720 kb on + strand, within AO356_16415at 3711.720 kb on + strand, within AO356_16415at 3711.720 kb on + strand, within AO356_16415at 3711.720 kb on + strand, within AO356_16415at 3711.720 kb on + strand, within AO356_16415at 3711.721 kb on - strand, within AO356_16415at 3711.721 kb on - strand, within AO356_16415at 3711.721 kb on - strand, within AO356_16415at 3711.721 kb on - strand, within AO356_16415at 3711.721 kb on - strand, within AO356_16415at 3711.721 kb on - strand, within AO356_16415at 3711.721 kb on - strand, within AO356_16415at 3711.721 kb on - strand, within AO356_16415at 3711.721 kb on - strand, within AO356_16415at 3711.721 kb on - strand, within AO356_16415at 3711.721 kb on - strand, within AO356_16415at 3711.721 kb on - strand, within AO356_16415at 3711.721 kb on - strand, within AO356_16415at 3711.721 kb on - strand, within AO356_16415at 3711.740 kb on + strand, within AO356_16415at 3711.741 kb on - strand, within AO356_16415at 3711.789 kb on + strand, within AO356_16415at 3711.789 kb on + strand, within AO356_16415at 3711.789 kb on + strand, within AO356_16415at 3711.789 kb on + strand, within AO356_16415at 3711.789 kb on + strand, within AO356_16415at 3711.790 kb on - strand, within AO356_16415at 3711.790 kb on - strand, within AO356_16415at 3711.790 kb on - strand, within AO356_16415at 3711.816 kb on - strand, within AO356_16415at 3711.927 kb on + strand, within AO356_16415at 3711.928 kb on - strand, within AO356_16415at 3711.928 kb on - strand, within AO356_16415at 3711.928 kb on - strand, within AO356_16415at 3711.928 kb on - strand, within AO356_16415at 3712.017 kb on + strand, within AO356_16415at 3712.017 kb on + strand, within AO356_16415at 3712.017 kb on + strand, within AO356_16415at 3712.018 kb on - strand, within AO356_16415at 3712.018 kb on - strand, within AO356_16415at 3712.018 kb on - strand, within AO356_16415at 3712.018 kb on - strand, within AO356_16415at 3712.018 kb on - strand, within AO356_16415at 3712.018 kb on - strand, within AO356_16415at 3712.018 kb on - strand, within AO356_16415at 3712.074 kb on + strand, within AO356_16415at 3712.074 kb on + strand, within AO356_16415at 3712.074 kb on + strand, within AO356_16415at 3712.075 kb on - strand, within AO356_16415at 3712.075 kb on - strand, within AO356_16415at 3712.107 kb on + strand, within AO356_16415at 3712.107 kb on + strand, within AO356_16415at 3712.107 kb on + strand, within AO356_16415at 3712.107 kb on + strand, within AO356_16415at 3712.107 kb on + strand, within AO356_16415at 3712.108 kb on - strand, within AO356_16415at 3712.167 kb on + strandat 3712.168 kb on - strandat 3712.168 kb on - strandat 3712.290 kb on - strandat 3712.314 kb on + strandat 3712.314 kb on + strandat 3712.315 kb on - strandat 3712.400 kb on + strandat 3712.401 kb on - strandat 3712.401 kb on - strandat 3712.401 kb on - strandat 3712.486 kb on + strandat 3712.508 kb on + strandat 3712.508 kb on + strandat 3712.508 kb on + strandat 3712.509 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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3,709,220 + AO356_16410 0.59 +0.5
3,709,220 + AO356_16410 0.59 -2.5
3,709,221 - AO356_16410 0.59 -0.2
3,709,221 - AO356_16410 0.59 +0.5
3,709,272 - AO356_16410 0.62 +0.5
3,709,272 - AO356_16410 0.62 +0.1
3,709,545 - AO356_16410 0.74 -0.0
3,709,899 + +0.4
3,709,899 + +0.6
3,709,899 + +0.3
3,709,900 - -0.2
3,710,086 + -1.3
3,710,087 - +1.1
3,710,160 - -1.1
3,710,219 + -0.1
3,710,219 + -0.3
3,710,220 - +0.6
3,710,220 - -0.8
3,710,241 - +0.1
3,710,241 - +0.5
3,710,241 - +0.1
3,710,241 - -0.8
3,710,241 - +1.3
3,710,283 + -0.0
3,710,283 + +0.5
3,710,284 - +0.4
3,710,284 - +0.2
3,710,284 - -1.0
3,710,316 + -0.0
3,710,317 - -1.3
3,710,317 - -0.3
3,710,331 + +0.2
3,710,348 + +0.5
3,710,348 + +0.2
3,710,349 - -0.3
3,710,349 - +0.8
3,710,384 + AO356_16415 0.10 +0.4
3,710,384 + AO356_16415 0.10 +0.5
3,710,384 + AO356_16415 0.10 -0.4
3,710,384 + AO356_16415 0.10 -0.6
3,710,385 - AO356_16415 0.10 +1.0
3,710,610 + AO356_16415 0.20 +0.9
3,710,610 + AO356_16415 0.20 -1.0
3,710,610 + AO356_16415 0.20 +1.1
3,710,610 + AO356_16415 0.20 +0.0
3,710,610 + AO356_16415 0.20 -0.5
3,710,610 + AO356_16415 0.20 -0.0
3,710,610 + AO356_16415 0.20 +1.7
3,710,610 + AO356_16415 0.20 -0.0
3,710,611 - AO356_16415 0.20 -0.2
3,710,611 - AO356_16415 0.20 +0.1
3,710,611 - AO356_16415 0.20 -1.5
3,710,611 - AO356_16415 0.20 +0.5
3,710,611 - AO356_16415 0.20 +0.5
3,710,611 - AO356_16415 0.20 -0.2
3,710,611 - AO356_16415 0.20 -0.4
3,710,612 + AO356_16415 0.20 +0.7
3,710,654 + AO356_16415 0.22 -0.2
3,710,654 + AO356_16415 0.22 -1.3
3,710,654 + AO356_16415 0.22 +1.0
3,710,654 + AO356_16415 0.22 -1.6
3,710,655 - AO356_16415 0.22 +1.9
3,710,655 - AO356_16415 0.22 -0.3
3,710,711 + AO356_16415 0.25 +0.0
3,710,711 + AO356_16415 0.25 +0.3
3,710,712 - AO356_16415 0.25 +0.2
3,710,738 + AO356_16415 0.26 -0.2
3,710,738 + AO356_16415 0.26 +0.5
3,710,738 + AO356_16415 0.26 -0.1
3,710,739 - AO356_16415 0.26 -0.3
3,710,739 - AO356_16415 0.26 -1.5
3,710,739 - AO356_16415 0.26 -1.0
3,710,768 + AO356_16415 0.27 -0.5
3,710,769 - AO356_16415 0.27 -1.0
3,710,769 - AO356_16415 0.27 +1.0
3,710,769 - AO356_16415 0.27 -0.1
3,710,854 - AO356_16415 0.31 +0.3
3,710,854 - AO356_16415 0.31 +0.0
3,710,937 - AO356_16415 0.35 +0.9
3,710,970 + AO356_16415 0.36 -0.2
3,710,970 + AO356_16415 0.36 +0.5
3,710,971 - AO356_16415 0.36 -0.0
3,710,985 + AO356_16415 0.37 +0.1
3,710,985 + AO356_16415 0.37 +0.4
3,710,985 + AO356_16415 0.37 -0.2
3,710,986 - AO356_16415 0.37 -0.7
3,710,986 - AO356_16415 0.37 +1.2
3,710,986 - AO356_16415 0.37 -0.5
3,710,986 - AO356_16415 0.37 +0.0
3,710,986 - AO356_16415 0.37 -0.4
3,710,986 - AO356_16415 0.37 +0.5
3,711,069 + AO356_16415 0.41 -0.2
3,711,069 + AO356_16415 0.41 +0.1
3,711,070 - AO356_16415 0.41 -0.7
3,711,099 + AO356_16415 0.42 +0.5
3,711,099 + AO356_16415 0.42 +0.9
3,711,100 - AO356_16415 0.42 +0.3
3,711,100 - AO356_16415 0.42 +0.1
3,711,253 + AO356_16415 0.49 +0.5
3,711,253 + AO356_16415 0.49 -0.4
3,711,253 + AO356_16415 0.49 +0.2
3,711,254 - AO356_16415 0.49 +0.8
3,711,548 + AO356_16415 0.62 +0.2
3,711,549 - AO356_16415 0.62 +0.3
3,711,720 + AO356_16415 0.70 -1.6
3,711,720 + AO356_16415 0.70 +0.5
3,711,720 + AO356_16415 0.70 -1.0
3,711,720 + AO356_16415 0.70 -0.6
3,711,720 + AO356_16415 0.70 +0.0
3,711,720 + AO356_16415 0.70 -0.2
3,711,720 + AO356_16415 0.70 +0.3
3,711,720 + AO356_16415 0.70 +0.1
3,711,720 + AO356_16415 0.70 +0.3
3,711,720 + AO356_16415 0.70 -0.4
3,711,721 - AO356_16415 0.70 +1.2
3,711,721 - AO356_16415 0.70 +0.6
3,711,721 - AO356_16415 0.70 +0.2
3,711,721 - AO356_16415 0.70 +0.1
3,711,721 - AO356_16415 0.70 -0.6
3,711,721 - AO356_16415 0.70 -1.8
3,711,721 - AO356_16415 0.70 -2.2
3,711,721 - AO356_16415 0.70 -0.1
3,711,721 - AO356_16415 0.70 +0.1
3,711,721 - AO356_16415 0.70 -0.2
3,711,721 - AO356_16415 0.70 +0.1
3,711,721 - AO356_16415 0.70 -0.6
3,711,721 - AO356_16415 0.70 -0.3
3,711,721 - AO356_16415 0.70 -0.6
3,711,740 + AO356_16415 0.71 -0.0
3,711,741 - AO356_16415 0.71 -0.2
3,711,789 + AO356_16415 0.73 +0.7
3,711,789 + AO356_16415 0.73 -1.0
3,711,789 + AO356_16415 0.73 +0.2
3,711,789 + AO356_16415 0.73 +0.3
3,711,789 + AO356_16415 0.73 +1.2
3,711,790 - AO356_16415 0.73 +0.7
3,711,790 - AO356_16415 0.73 +0.6
3,711,790 - AO356_16415 0.73 -0.3
3,711,816 - AO356_16415 0.74 -0.4
3,711,927 + AO356_16415 0.79 +0.2
3,711,928 - AO356_16415 0.79 -0.1
3,711,928 - AO356_16415 0.79 -0.0
3,711,928 - AO356_16415 0.79 -0.0
3,711,928 - AO356_16415 0.79 +0.8
3,712,017 + AO356_16415 0.83 +0.7
3,712,017 + AO356_16415 0.83 +1.0
3,712,017 + AO356_16415 0.83 -0.5
3,712,018 - AO356_16415 0.83 -1.2
3,712,018 - AO356_16415 0.83 +0.4
3,712,018 - AO356_16415 0.83 -0.5
3,712,018 - AO356_16415 0.83 +0.1
3,712,018 - AO356_16415 0.83 +0.6
3,712,018 - AO356_16415 0.83 -0.4
3,712,018 - AO356_16415 0.83 -0.2
3,712,074 + AO356_16415 0.86 +0.2
3,712,074 + AO356_16415 0.86 -0.6
3,712,074 + AO356_16415 0.86 +0.3
3,712,075 - AO356_16415 0.86 +0.1
3,712,075 - AO356_16415 0.86 -1.8
3,712,107 + AO356_16415 0.87 -0.0
3,712,107 + AO356_16415 0.87 +0.1
3,712,107 + AO356_16415 0.87 -0.7
3,712,107 + AO356_16415 0.87 +0.3
3,712,107 + AO356_16415 0.87 +0.0
3,712,108 - AO356_16415 0.88 +0.3
3,712,167 + -0.0
3,712,168 - +0.1
3,712,168 - +0.4
3,712,290 - -0.6
3,712,314 + +0.1
3,712,314 + +1.5
3,712,315 - +0.3
3,712,400 + +0.1
3,712,401 - +0.7
3,712,401 - +0.2
3,712,401 - -0.4
3,712,486 + -0.3
3,712,508 + -0.8
3,712,508 + +0.6
3,712,508 + +0.3
3,712,509 - +0.4

Or see this region's nucleotide sequence