Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02705 and AO356_02710 overlap by 8 nucleotides AO356_02710 and AO356_02715 overlap by 4 nucleotides AO356_02715 and AO356_02720 overlap by 4 nucleotides AO356_02720 and AO356_02725 overlap by 17 nucleotides
AO356_02705: AO356_02705 - type III secretion system protein, at 592,930 to 593,589
_02705
AO356_02710: AO356_02710 - flagellar motor switch/type III secretory pathway protein, at 593,582 to 594,511
_02710
AO356_02715: AO356_02715 - type III secretion effector protein, at 594,508 to 595,377
_02715
AO356_02720: AO356_02720 - type III secretion protein, at 595,374 to 595,829
_02720
AO356_02725: AO356_02725 - ATP synthase, at 595,813 to 597,099
_02725
Position (kb) 594
595
596 Strain fitness (log2 ratio) -1
0
1 at 593.513 kb on + strand, within AO356_02705 at 593.514 kb on - strand, within AO356_02705 at 593.879 kb on + strand, within AO356_02710 at 593.879 kb on + strand, within AO356_02710 at 593.879 kb on + strand, within AO356_02710 at 593.880 kb on - strand, within AO356_02710 at 593.917 kb on - strand, within AO356_02710 at 594.095 kb on + strand, within AO356_02710 at 594.095 kb on + strand, within AO356_02710 at 594.259 kb on + strand, within AO356_02710 at 594.260 kb on - strand, within AO356_02710 at 594.315 kb on + strand, within AO356_02710 at 594.384 kb on + strand, within AO356_02710 at 594.384 kb on + strand, within AO356_02710 at 594.384 kb on + strand, within AO356_02710 at 594.657 kb on + strand, within AO356_02715 at 594.715 kb on + strand, within AO356_02715 at 594.715 kb on + strand, within AO356_02715 at 594.716 kb on - strand, within AO356_02715 at 594.739 kb on - strand, within AO356_02715 at 594.820 kb on + strand, within AO356_02715 at 594.821 kb on - strand, within AO356_02715 at 595.113 kb on + strand, within AO356_02715 at 595.472 kb on - strand, within AO356_02720 at 595.472 kb on - strand, within AO356_02720 at 595.472 kb on - strand, within AO356_02720 at 595.472 kb on - strand, within AO356_02720 at 596.123 kb on + strand, within AO356_02725 at 596.124 kb on - strand, within AO356_02725 at 596.124 kb on - strand, within AO356_02725 at 596.202 kb on - strand, within AO356_02725 at 596.202 kb on - strand, within AO356_02725 at 596.202 kb on - strand, within AO356_02725 at 596.342 kb on + strand, within AO356_02725
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 593,513 + AO356_02705 0.88 +0.2 593,514 - AO356_02705 0.88 +0.8 593,879 + AO356_02710 0.32 +1.1 593,879 + AO356_02710 0.32 -0.4 593,879 + AO356_02710 0.32 +0.4 593,880 - AO356_02710 0.32 +0.6 593,917 - AO356_02710 0.36 +0.7 594,095 + AO356_02710 0.55 -0.5 594,095 + AO356_02710 0.55 +0.1 594,259 + AO356_02710 0.73 +0.3 594,260 - AO356_02710 0.73 +0.8 594,315 + AO356_02710 0.79 +0.6 594,384 + AO356_02710 0.86 -0.2 594,384 + AO356_02710 0.86 -0.1 594,384 + AO356_02710 0.86 -0.0 594,657 + AO356_02715 0.17 +0.6 594,715 + AO356_02715 0.24 +0.8 594,715 + AO356_02715 0.24 -0.1 594,716 - AO356_02715 0.24 -1.2 594,739 - AO356_02715 0.27 +0.9 594,820 + AO356_02715 0.36 +0.3 594,821 - AO356_02715 0.36 +0.2 595,113 + AO356_02715 0.70 +0.2 595,472 - AO356_02720 0.21 -0.2 595,472 - AO356_02720 0.21 -0.1 595,472 - AO356_02720 0.21 -0.3 595,472 - AO356_02720 0.21 -0.7 596,123 + AO356_02725 0.24 -0.0 596,124 - AO356_02725 0.24 -0.3 596,124 - AO356_02725 0.24 +1.3 596,202 - AO356_02725 0.30 -1.1 596,202 - AO356_02725 0.30 +0.3 596,202 - AO356_02725 0.30 -0.2 596,342 + AO356_02725 0.41 -0.5
Or see this region's nucleotide sequence