Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004006 and ABIE53_004007 are separated by 93 nucleotides ABIE53_004007 and ABIE53_004008 are separated by 410 nucleotides ABIE53_004008 and ABIE53_004009 are separated by 46 nucleotides ABIE53_004009 and ABIE53_004010 are separated by 83 nucleotides
ABIE53_004006: ABIE53_004006 - propanol-preferring alcohol dehydrogenase, at 164,116 to 165,102
_004006
ABIE53_004007: ABIE53_004007 - hypothetical protein, at 165,196 to 165,378
_004007
ABIE53_004008: ABIE53_004008 - hypothetical protein, at 165,789 to 166,169
_004008
ABIE53_004009: ABIE53_004009 - TetR/AcrR family transcriptional regulator of autoinduction and epiphytic fitness, at 166,216 to 166,830
_004009
ABIE53_004010: ABIE53_004010 - L-ascorbate metabolism protein UlaG (beta-lactamase superfamily), at 166,914 to 168,065
_004010
Position (kb) 165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 165.197 kb on + strand at 165.240 kb on + strand, within ABIE53_004007 at 165.241 kb on - strand, within ABIE53_004007 at 165.343 kb on + strand, within ABIE53_004007 at 165.364 kb on + strand at 165.364 kb on + strand at 165.364 kb on + strand at 165.364 kb on + strand at 165.365 kb on - strand at 165.365 kb on - strand at 165.365 kb on - strand at 165.542 kb on - strand at 165.564 kb on + strand at 165.564 kb on + strand at 165.564 kb on + strand at 165.565 kb on - strand at 165.583 kb on + strand at 165.600 kb on - strand at 165.662 kb on + strand at 165.662 kb on + strand at 165.662 kb on + strand at 165.663 kb on - strand at 165.698 kb on + strand at 165.699 kb on - strand at 165.699 kb on - strand at 165.699 kb on - strand at 165.714 kb on + strand at 165.774 kb on + strand at 165.774 kb on + strand at 165.774 kb on + strand at 165.775 kb on - strand at 165.775 kb on - strand at 165.775 kb on - strand at 165.882 kb on + strand, within ABIE53_004008 at 165.882 kb on + strand, within ABIE53_004008 at 165.883 kb on - strand, within ABIE53_004008 at 165.941 kb on + strand, within ABIE53_004008 at 165.941 kb on + strand, within ABIE53_004008 at 165.942 kb on - strand, within ABIE53_004008 at 165.942 kb on - strand, within ABIE53_004008 at 165.995 kb on - strand, within ABIE53_004008 at 165.995 kb on - strand, within ABIE53_004008 at 166.060 kb on + strand, within ABIE53_004008 at 166.061 kb on - strand, within ABIE53_004008 at 166.061 kb on - strand, within ABIE53_004008 at 166.167 kb on + strand at 166.201 kb on + strand at 166.240 kb on - strand at 166.530 kb on + strand, within ABIE53_004009 at 166.530 kb on + strand, within ABIE53_004009 at 166.531 kb on - strand, within ABIE53_004009 at 166.531 kb on - strand, within ABIE53_004009 at 166.550 kb on - strand, within ABIE53_004009 at 166.679 kb on + strand, within ABIE53_004009 at 166.679 kb on + strand, within ABIE53_004009 at 166.679 kb on + strand, within ABIE53_004009 at 166.696 kb on + strand, within ABIE53_004009 at 166.696 kb on + strand, within ABIE53_004009 at 166.697 kb on - strand, within ABIE53_004009 at 166.697 kb on - strand, within ABIE53_004009 at 166.697 kb on - strand, within ABIE53_004009 at 166.697 kb on - strand, within ABIE53_004009 at 166.697 kb on - strand, within ABIE53_004009 at 166.773 kb on + strand at 166.869 kb on - strand at 167.168 kb on + strand, within ABIE53_004010 at 167.168 kb on + strand, within ABIE53_004010
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 165,197 + -0.3 165,240 + ABIE53_004007 0.24 -0.7 165,241 - ABIE53_004007 0.25 +0.2 165,343 + ABIE53_004007 0.80 +1.6 165,364 + -0.5 165,364 + -1.5 165,364 + -1.4 165,364 + +0.6 165,365 - -2.1 165,365 - -1.0 165,365 - -0.6 165,542 - -1.4 165,564 + -1.5 165,564 + -1.2 165,564 + +1.6 165,565 - -0.9 165,583 + +0.3 165,600 - +1.0 165,662 + -0.5 165,662 + +0.6 165,662 + +0.6 165,663 - -1.1 165,698 + +2.2 165,699 - +0.6 165,699 - +1.0 165,699 - +1.1 165,714 + -0.4 165,774 + -0.2 165,774 + -2.4 165,774 + +0.3 165,775 - -1.5 165,775 - -1.2 165,775 - +0.4 165,882 + ABIE53_004008 0.24 -0.7 165,882 + ABIE53_004008 0.24 +0.4 165,883 - ABIE53_004008 0.25 -1.0 165,941 + ABIE53_004008 0.40 +0.4 165,941 + ABIE53_004008 0.40 +2.1 165,942 - ABIE53_004008 0.40 +0.7 165,942 - ABIE53_004008 0.40 +0.3 165,995 - ABIE53_004008 0.54 -1.6 165,995 - ABIE53_004008 0.54 -2.9 166,060 + ABIE53_004008 0.71 -1.3 166,061 - ABIE53_004008 0.71 -0.2 166,061 - ABIE53_004008 0.71 +0.7 166,167 + +0.6 166,201 + +0.6 166,240 - -1.4 166,530 + ABIE53_004009 0.51 -2.2 166,530 + ABIE53_004009 0.51 -0.7 166,531 - ABIE53_004009 0.51 -0.1 166,531 - ABIE53_004009 0.51 -0.7 166,550 - ABIE53_004009 0.54 +0.9 166,679 + ABIE53_004009 0.75 +1.4 166,679 + ABIE53_004009 0.75 -1.0 166,679 + ABIE53_004009 0.75 -1.4 166,696 + ABIE53_004009 0.78 -1.0 166,696 + ABIE53_004009 0.78 -1.0 166,697 - ABIE53_004009 0.78 +1.6 166,697 - ABIE53_004009 0.78 -1.6 166,697 - ABIE53_004009 0.78 -1.1 166,697 - ABIE53_004009 0.78 +0.3 166,697 - ABIE53_004009 0.78 +1.6 166,773 + -1.8 166,869 - +0.6 167,168 + ABIE53_004010 0.22 +0.3 167,168 + ABIE53_004010 0.22 -0.6
Or see this region's nucleotide sequence