Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS10100

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS10090 and ABIE51_RS10095 are separated by 1 nucleotidesABIE51_RS10095 and ABIE51_RS10100 overlap by 8 nucleotidesABIE51_RS10100 and ABIE51_RS10105 overlap by 4 nucleotidesABIE51_RS10105 and ABIE51_RS10110 overlap by 4 nucleotides ABIE51_RS10090: ABIE51_RS10090 - efflux RND transporter permease subunit, at 2,173,458 to 2,176,517 _RS10090 ABIE51_RS10095: ABIE51_RS10095 - Na+/H+ antiporter subunit E, at 2,176,519 to 2,177,043 _RS10095 ABIE51_RS10100: ABIE51_RS10100 - monovalent cation/H+ antiporter complex subunit F, at 2,177,036 to 2,177,296 _RS10100 ABIE51_RS10105: ABIE51_RS10105 - monovalent cation/H(+) antiporter subunit G, at 2,177,293 to 2,177,595 _RS10105 ABIE51_RS10110: ABIE51_RS10110 - hydrogenase subunit MbhD domain-containing protein, at 2,177,592 to 2,178,536 _RS10110 Position (kb) 2177 2178Strain fitness (log2 ratio) -1 0 1at 2176.461 kb on + strandat 2176.461 kb on + strandat 2176.927 kb on + strand, within ABIE51_RS10095at 2176.927 kb on + strand, within ABIE51_RS10095at 2177.829 kb on + strand, within ABIE51_RS10110at 2177.829 kb on + strand, within ABIE51_RS10110at 2177.915 kb on - strand, within ABIE51_RS10110at 2178.160 kb on - strand, within ABIE51_RS10110at 2178.205 kb on - strand, within ABIE51_RS10110at 2178.205 kb on - strand, within ABIE51_RS10110

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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2,176,461 + -0.3
2,176,461 + -0.1
2,176,927 + ABIE51_RS10095 0.78 -0.0
2,176,927 + ABIE51_RS10095 0.78 -0.1
2,177,829 + ABIE51_RS10110 0.25 +0.3
2,177,829 + ABIE51_RS10110 0.25 -0.6
2,177,915 - ABIE51_RS10110 0.34 +0.3
2,178,160 - ABIE51_RS10110 0.60 +0.4
2,178,205 - ABIE51_RS10110 0.65 -0.8
2,178,205 - ABIE51_RS10110 0.65 +0.3

Or see this region's nucleotide sequence