Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24560 and RR42_RS24565 are separated by 208 nucleotides RR42_RS24565 and RR42_RS24570 are separated by 13 nucleotides
RR42_RS24560: RR42_RS24560 - alcohol dehydrogenase, at 842,443 to 843,612
_RS24560
RR42_RS24565: RR42_RS24565 - monooxygenase, at 843,821 to 845,275
_RS24565
RR42_RS24570: RR42_RS24570 - alpha/beta hydrolase, at 845,289 to 846,266
_RS24570
Position (kb) 843
844
845
846 Strain fitness (log2 ratio) -2
-1
0
1 at 842.902 kb on - strand, within RR42_RS24560 at 842.902 kb on - strand, within RR42_RS24560 at 842.960 kb on - strand, within RR42_RS24560 at 843.062 kb on - strand, within RR42_RS24560 at 843.062 kb on - strand, within RR42_RS24560 at 843.062 kb on - strand, within RR42_RS24560 at 843.125 kb on + strand, within RR42_RS24560 at 843.141 kb on - strand, within RR42_RS24560 at 843.257 kb on - strand, within RR42_RS24560 at 843.427 kb on - strand, within RR42_RS24560 at 843.546 kb on - strand at 843.607 kb on + strand at 843.746 kb on + strand at 843.746 kb on + strand at 843.747 kb on - strand at 843.747 kb on - strand at 843.763 kb on - strand at 843.840 kb on - strand at 843.840 kb on - strand at 843.972 kb on - strand, within RR42_RS24565 at 844.007 kb on + strand, within RR42_RS24565 at 844.008 kb on - strand, within RR42_RS24565 at 844.049 kb on + strand, within RR42_RS24565 at 844.076 kb on + strand, within RR42_RS24565 at 844.292 kb on + strand, within RR42_RS24565 at 844.293 kb on - strand, within RR42_RS24565 at 844.293 kb on - strand, within RR42_RS24565 at 844.379 kb on + strand, within RR42_RS24565 at 844.380 kb on - strand, within RR42_RS24565 at 844.670 kb on + strand, within RR42_RS24565 at 844.670 kb on + strand, within RR42_RS24565 at 844.671 kb on - strand, within RR42_RS24565 at 844.710 kb on - strand, within RR42_RS24565 at 844.710 kb on - strand, within RR42_RS24565 at 844.925 kb on + strand, within RR42_RS24565 at 844.970 kb on + strand, within RR42_RS24565 at 844.970 kb on + strand, within RR42_RS24565 at 844.971 kb on - strand, within RR42_RS24565 at 845.033 kb on + strand, within RR42_RS24565 at 845.034 kb on - strand, within RR42_RS24565 at 845.034 kb on - strand, within RR42_RS24565 at 845.034 kb on - strand, within RR42_RS24565 at 845.111 kb on + strand, within RR42_RS24565 at 845.111 kb on + strand, within RR42_RS24565 at 845.112 kb on - strand, within RR42_RS24565 at 845.112 kb on - strand, within RR42_RS24565 at 845.112 kb on - strand, within RR42_RS24565 at 845.112 kb on - strand, within RR42_RS24565 at 845.174 kb on + strand at 845.174 kb on + strand at 845.175 kb on - strand at 845.318 kb on - strand at 845.382 kb on + strand at 845.674 kb on - strand, within RR42_RS24570 at 845.744 kb on - strand, within RR42_RS24570 at 845.813 kb on + strand, within RR42_RS24570 at 845.853 kb on + strand, within RR42_RS24570 at 845.854 kb on - strand, within RR42_RS24570 at 845.864 kb on - strand, within RR42_RS24570 at 845.864 kb on - strand, within RR42_RS24570 at 845.864 kb on - strand, within RR42_RS24570 at 845.898 kb on - strand, within RR42_RS24570 at 845.898 kb on - strand, within RR42_RS24570 at 845.980 kb on - strand, within RR42_RS24570 at 846.028 kb on + strand, within RR42_RS24570 at 846.062 kb on + strand, within RR42_RS24570 at 846.108 kb on + strand, within RR42_RS24570 at 846.220 kb on + strand at 846.235 kb on + strand at 846.236 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 842,902 - RR42_RS24560 0.39 +1.3 842,902 - RR42_RS24560 0.39 -1.5 842,960 - RR42_RS24560 0.44 -0.3 843,062 - RR42_RS24560 0.53 -1.5 843,062 - RR42_RS24560 0.53 -0.4 843,062 - RR42_RS24560 0.53 +0.1 843,125 + RR42_RS24560 0.58 -0.4 843,141 - RR42_RS24560 0.60 -1.0 843,257 - RR42_RS24560 0.70 -0.2 843,427 - RR42_RS24560 0.84 -1.3 843,546 - -0.5 843,607 + +0.3 843,746 + +1.1 843,746 + +0.8 843,747 - +0.2 843,747 - +0.5 843,763 - +0.4 843,840 - +0.1 843,840 - -1.5 843,972 - RR42_RS24565 0.10 +1.1 844,007 + RR42_RS24565 0.13 +0.2 844,008 - RR42_RS24565 0.13 +0.7 844,049 + RR42_RS24565 0.16 -0.4 844,076 + RR42_RS24565 0.18 -1.8 844,292 + RR42_RS24565 0.32 -1.5 844,293 - RR42_RS24565 0.32 -0.6 844,293 - RR42_RS24565 0.32 -0.2 844,379 + RR42_RS24565 0.38 +0.6 844,380 - RR42_RS24565 0.38 +0.1 844,670 + RR42_RS24565 0.58 -0.1 844,670 + RR42_RS24565 0.58 -1.5 844,671 - RR42_RS24565 0.58 +0.5 844,710 - RR42_RS24565 0.61 +0.7 844,710 - RR42_RS24565 0.61 +0.6 844,925 + RR42_RS24565 0.76 -0.4 844,970 + RR42_RS24565 0.79 -0.7 844,970 + RR42_RS24565 0.79 -0.1 844,971 - RR42_RS24565 0.79 -0.4 845,033 + RR42_RS24565 0.83 -0.1 845,034 - RR42_RS24565 0.83 -2.2 845,034 - RR42_RS24565 0.83 +1.4 845,034 - RR42_RS24565 0.83 +0.1 845,111 + RR42_RS24565 0.89 +0.5 845,111 + RR42_RS24565 0.89 +1.1 845,112 - RR42_RS24565 0.89 -0.6 845,112 - RR42_RS24565 0.89 +0.8 845,112 - RR42_RS24565 0.89 -0.5 845,112 - RR42_RS24565 0.89 -0.1 845,174 + -1.3 845,174 + +0.5 845,175 - +1.0 845,318 - +0.5 845,382 + -0.3 845,674 - RR42_RS24570 0.39 -0.1 845,744 - RR42_RS24570 0.47 +0.5 845,813 + RR42_RS24570 0.54 +0.6 845,853 + RR42_RS24570 0.58 -0.4 845,854 - RR42_RS24570 0.58 +1.3 845,864 - RR42_RS24570 0.59 +0.4 845,864 - RR42_RS24570 0.59 -0.3 845,864 - RR42_RS24570 0.59 +0.8 845,898 - RR42_RS24570 0.62 -0.1 845,898 - RR42_RS24570 0.62 +0.9 845,980 - RR42_RS24570 0.71 +0.1 846,028 + RR42_RS24570 0.76 +0.5 846,062 + RR42_RS24570 0.79 -1.0 846,108 + RR42_RS24570 0.84 +0.9 846,220 + +0.2 846,235 + -0.8 846,236 - -0.5
Or see this region's nucleotide sequence