Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24555 and RR42_RS24560 are separated by 35 nucleotides RR42_RS24560 and RR42_RS24565 are separated by 208 nucleotides
RR42_RS24555: RR42_RS24555 - succinate-semialdehyde dehydrogenase, at 840,923 to 842,407
_RS24555
RR42_RS24560: RR42_RS24560 - alcohol dehydrogenase, at 842,443 to 843,612
_RS24560
RR42_RS24565: RR42_RS24565 - monooxygenase, at 843,821 to 845,275
_RS24565
Position (kb) 842
843
844 Strain fitness (log2 ratio) -2
-1
0
1 at 841.490 kb on - strand, within RR42_RS24555 at 841.862 kb on + strand, within RR42_RS24555 at 841.862 kb on + strand, within RR42_RS24555 at 841.863 kb on - strand, within RR42_RS24555 at 842.130 kb on + strand, within RR42_RS24555 at 842.192 kb on + strand, within RR42_RS24555 at 842.192 kb on + strand, within RR42_RS24555 at 842.213 kb on + strand, within RR42_RS24555 at 842.213 kb on + strand, within RR42_RS24555 at 842.261 kb on + strand at 842.372 kb on + strand at 842.373 kb on - strand at 842.388 kb on - strand at 842.388 kb on - strand at 842.388 kb on - strand at 842.466 kb on - strand at 842.818 kb on + strand, within RR42_RS24560 at 842.818 kb on + strand, within RR42_RS24560 at 842.818 kb on + strand, within RR42_RS24560 at 842.818 kb on + strand, within RR42_RS24560 at 842.818 kb on + strand, within RR42_RS24560 at 842.819 kb on - strand, within RR42_RS24560 at 842.819 kb on - strand, within RR42_RS24560 at 842.902 kb on - strand, within RR42_RS24560 at 842.902 kb on - strand, within RR42_RS24560 at 842.960 kb on - strand, within RR42_RS24560 at 843.062 kb on - strand, within RR42_RS24560 at 843.062 kb on - strand, within RR42_RS24560 at 843.062 kb on - strand, within RR42_RS24560 at 843.125 kb on + strand, within RR42_RS24560 at 843.141 kb on - strand, within RR42_RS24560 at 843.257 kb on - strand, within RR42_RS24560 at 843.427 kb on - strand, within RR42_RS24560 at 843.546 kb on - strand at 843.607 kb on + strand at 843.746 kb on + strand at 843.746 kb on + strand at 843.747 kb on - strand at 843.747 kb on - strand at 843.763 kb on - strand at 843.840 kb on - strand at 843.840 kb on - strand at 843.972 kb on - strand, within RR42_RS24565 at 844.007 kb on + strand, within RR42_RS24565 at 844.008 kb on - strand, within RR42_RS24565 at 844.049 kb on + strand, within RR42_RS24565 at 844.076 kb on + strand, within RR42_RS24565 at 844.292 kb on + strand, within RR42_RS24565 at 844.293 kb on - strand, within RR42_RS24565 at 844.293 kb on - strand, within RR42_RS24565 at 844.379 kb on + strand, within RR42_RS24565 at 844.380 kb on - strand, within RR42_RS24565
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 841,490 - RR42_RS24555 0.38 +0.5 841,862 + RR42_RS24555 0.63 -0.1 841,862 + RR42_RS24555 0.63 +1.1 841,863 - RR42_RS24555 0.63 +0.6 842,130 + RR42_RS24555 0.81 -0.6 842,192 + RR42_RS24555 0.85 -0.6 842,192 + RR42_RS24555 0.85 -0.2 842,213 + RR42_RS24555 0.87 -0.1 842,213 + RR42_RS24555 0.87 -0.2 842,261 + +0.8 842,372 + +0.7 842,373 - -0.1 842,388 - -0.5 842,388 - -0.5 842,388 - +0.5 842,466 - +0.1 842,818 + RR42_RS24560 0.32 +0.2 842,818 + RR42_RS24560 0.32 -0.1 842,818 + RR42_RS24560 0.32 -1.6 842,818 + RR42_RS24560 0.32 +0.1 842,818 + RR42_RS24560 0.32 +0.9 842,819 - RR42_RS24560 0.32 -2.2 842,819 - RR42_RS24560 0.32 -0.1 842,902 - RR42_RS24560 0.39 +1.3 842,902 - RR42_RS24560 0.39 -1.5 842,960 - RR42_RS24560 0.44 -0.3 843,062 - RR42_RS24560 0.53 -1.5 843,062 - RR42_RS24560 0.53 -0.4 843,062 - RR42_RS24560 0.53 +0.1 843,125 + RR42_RS24560 0.58 -0.4 843,141 - RR42_RS24560 0.60 -1.0 843,257 - RR42_RS24560 0.70 -0.2 843,427 - RR42_RS24560 0.84 -1.3 843,546 - -0.5 843,607 + +0.3 843,746 + +1.1 843,746 + +0.8 843,747 - +0.2 843,747 - +0.5 843,763 - +0.4 843,840 - +0.1 843,840 - -1.5 843,972 - RR42_RS24565 0.10 +1.1 844,007 + RR42_RS24565 0.13 +0.2 844,008 - RR42_RS24565 0.13 +0.7 844,049 + RR42_RS24565 0.16 -0.4 844,076 + RR42_RS24565 0.18 -1.8 844,292 + RR42_RS24565 0.32 -1.5 844,293 - RR42_RS24565 0.32 -0.6 844,293 - RR42_RS24565 0.32 -0.2 844,379 + RR42_RS24565 0.38 +0.6 844,380 - RR42_RS24565 0.38 +0.1
Or see this region's nucleotide sequence