Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24365 and RR42_RS24375 are separated by 667 nucleotides RR42_RS24375 and RR42_RS24380 are separated by 17 nucleotides
RR42_RS24365: RR42_RS24365 - hypothetical protein, at 797,199 to 797,696
_RS24365
RR42_RS24375: RR42_RS24375 - acyl-CoA dehydrogenase, at 798,364 to 799,536
_RS24375
RR42_RS24380: RR42_RS24380 - hypothetical protein, at 799,554 to 800,906
_RS24380
Position (kb) 798
799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 797.447 kb on - strand, within RR42_RS24365 at 797.557 kb on + strand, within RR42_RS24365 at 797.557 kb on + strand, within RR42_RS24365 at 797.558 kb on - strand, within RR42_RS24365 at 797.558 kb on - strand, within RR42_RS24365 at 797.558 kb on - strand, within RR42_RS24365 at 797.578 kb on + strand, within RR42_RS24365 at 797.578 kb on + strand, within RR42_RS24365 at 797.578 kb on + strand, within RR42_RS24365 at 797.578 kb on + strand, within RR42_RS24365 at 797.579 kb on - strand, within RR42_RS24365 at 797.579 kb on - strand, within RR42_RS24365 at 797.641 kb on + strand, within RR42_RS24365 at 797.641 kb on + strand, within RR42_RS24365 at 797.642 kb on - strand, within RR42_RS24365 at 797.642 kb on - strand, within RR42_RS24365 at 797.642 kb on - strand, within RR42_RS24365 at 797.651 kb on - strand at 797.797 kb on - strand at 797.797 kb on - strand at 797.807 kb on - strand at 797.838 kb on + strand at 797.838 kb on + strand at 797.839 kb on - strand at 797.839 kb on - strand at 797.884 kb on + strand at 797.884 kb on + strand at 797.967 kb on + strand at 798.036 kb on + strand at 798.196 kb on + strand at 798.196 kb on + strand at 798.197 kb on - strand at 798.197 kb on - strand at 798.197 kb on - strand at 798.228 kb on + strand at 798.229 kb on - strand at 798.229 kb on - strand at 798.229 kb on - strand at 798.249 kb on + strand at 798.249 kb on + strand at 798.320 kb on - strand at 798.338 kb on + strand at 798.338 kb on + strand at 798.338 kb on + strand at 798.338 kb on + strand at 798.339 kb on - strand at 798.339 kb on - strand at 798.354 kb on - strand at 798.359 kb on + strand at 798.360 kb on - strand at 798.366 kb on - strand at 798.366 kb on - strand at 798.366 kb on - strand at 798.366 kb on - strand at 798.462 kb on + strand at 798.462 kb on + strand at 798.462 kb on + strand at 798.462 kb on + strand at 798.463 kb on - strand at 798.479 kb on + strand at 798.479 kb on + strand at 798.479 kb on + strand at 798.480 kb on - strand at 798.601 kb on + strand, within RR42_RS24375 at 798.601 kb on + strand, within RR42_RS24375 at 798.602 kb on - strand, within RR42_RS24375 at 798.602 kb on - strand, within RR42_RS24375 at 798.664 kb on + strand, within RR42_RS24375 at 798.665 kb on - strand, within RR42_RS24375 at 798.665 kb on - strand, within RR42_RS24375 at 798.665 kb on - strand, within RR42_RS24375 at 798.683 kb on - strand, within RR42_RS24375 at 798.809 kb on + strand, within RR42_RS24375 at 798.809 kb on + strand, within RR42_RS24375 at 798.810 kb on - strand, within RR42_RS24375 at 798.897 kb on - strand, within RR42_RS24375 at 798.931 kb on + strand, within RR42_RS24375 at 798.932 kb on - strand, within RR42_RS24375 at 799.031 kb on + strand, within RR42_RS24375 at 799.032 kb on - strand, within RR42_RS24375 at 799.061 kb on + strand, within RR42_RS24375 at 799.062 kb on - strand, within RR42_RS24375 at 799.062 kb on - strand, within RR42_RS24375 at 799.062 kb on - strand, within RR42_RS24375 at 799.062 kb on - strand, within RR42_RS24375 at 799.117 kb on - strand, within RR42_RS24375 at 799.117 kb on - strand, within RR42_RS24375 at 799.242 kb on + strand, within RR42_RS24375 at 799.243 kb on - strand, within RR42_RS24375 at 799.243 kb on - strand, within RR42_RS24375 at 799.243 kb on - strand, within RR42_RS24375 at 799.310 kb on + strand, within RR42_RS24375 at 799.318 kb on + strand, within RR42_RS24375 at 799.318 kb on + strand, within RR42_RS24375 at 799.318 kb on + strand, within RR42_RS24375 at 799.318 kb on + strand, within RR42_RS24375 at 799.319 kb on - strand, within RR42_RS24375 at 799.319 kb on - strand, within RR42_RS24375 at 799.324 kb on + strand, within RR42_RS24375 at 799.325 kb on - strand, within RR42_RS24375 at 799.340 kb on + strand, within RR42_RS24375 at 799.367 kb on + strand, within RR42_RS24375 at 799.431 kb on + strand at 799.432 kb on - strand at 799.508 kb on + strand at 799.509 kb on - strand at 799.556 kb on - strand at 799.599 kb on + strand at 799.599 kb on + strand at 799.599 kb on + strand at 799.644 kb on + strand at 799.644 kb on + strand at 799.645 kb on - strand at 799.645 kb on - strand at 799.756 kb on + strand, within RR42_RS24380 at 799.756 kb on + strand, within RR42_RS24380 at 799.756 kb on + strand, within RR42_RS24380 at 799.756 kb on + strand, within RR42_RS24380 at 799.757 kb on - strand, within RR42_RS24380 at 799.760 kb on + strand, within RR42_RS24380 at 799.760 kb on + strand, within RR42_RS24380 at 799.760 kb on + strand, within RR42_RS24380 at 799.760 kb on + strand, within RR42_RS24380 at 799.760 kb on + strand, within RR42_RS24380 at 799.760 kb on + strand, within RR42_RS24380 at 799.761 kb on - strand, within RR42_RS24380 at 799.761 kb on - strand, within RR42_RS24380 at 799.761 kb on - strand, within RR42_RS24380 at 799.761 kb on - strand, within RR42_RS24380 at 799.836 kb on + strand, within RR42_RS24380 at 799.854 kb on + strand, within RR42_RS24380 at 799.854 kb on + strand, within RR42_RS24380 at 799.854 kb on + strand, within RR42_RS24380 at 799.854 kb on + strand, within RR42_RS24380 at 799.855 kb on - strand, within RR42_RS24380 at 799.944 kb on + strand, within RR42_RS24380 at 799.945 kb on - strand, within RR42_RS24380 at 800.086 kb on + strand, within RR42_RS24380 at 800.101 kb on + strand, within RR42_RS24380 at 800.102 kb on - strand, within RR42_RS24380 at 800.125 kb on + strand, within RR42_RS24380 at 800.125 kb on + strand, within RR42_RS24380 at 800.125 kb on + strand, within RR42_RS24380 at 800.126 kb on - strand, within RR42_RS24380 at 800.126 kb on - strand, within RR42_RS24380 at 800.289 kb on + strand, within RR42_RS24380 at 800.420 kb on + strand, within RR42_RS24380 at 800.420 kb on + strand, within RR42_RS24380 at 800.421 kb on - strand, within RR42_RS24380 at 800.421 kb on - strand, within RR42_RS24380 at 800.455 kb on + strand, within RR42_RS24380 at 800.455 kb on + strand, within RR42_RS24380 at 800.456 kb on - strand, within RR42_RS24380 at 800.456 kb on - strand, within RR42_RS24380 at 800.456 kb on - strand, within RR42_RS24380 at 800.456 kb on - strand, within RR42_RS24380 at 800.456 kb on - strand, within RR42_RS24380 at 800.456 kb on - strand, within RR42_RS24380 at 800.473 kb on + strand, within RR42_RS24380 at 800.473 kb on + strand, within RR42_RS24380 at 800.508 kb on + strand, within RR42_RS24380 at 800.509 kb on - strand, within RR42_RS24380 at 800.509 kb on - strand, within RR42_RS24380
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 797,447 - RR42_RS24365 0.50 +0.3 797,557 + RR42_RS24365 0.72 +1.6 797,557 + RR42_RS24365 0.72 -1.2 797,558 - RR42_RS24365 0.72 +1.7 797,558 - RR42_RS24365 0.72 +0.1 797,558 - RR42_RS24365 0.72 +0.8 797,578 + RR42_RS24365 0.76 -0.1 797,578 + RR42_RS24365 0.76 +0.2 797,578 + RR42_RS24365 0.76 -0.4 797,578 + RR42_RS24365 0.76 -0.7 797,579 - RR42_RS24365 0.76 -0.4 797,579 - RR42_RS24365 0.76 -1.1 797,641 + RR42_RS24365 0.89 -0.6 797,641 + RR42_RS24365 0.89 +0.3 797,642 - RR42_RS24365 0.89 +0.1 797,642 - RR42_RS24365 0.89 -0.3 797,642 - RR42_RS24365 0.89 -0.5 797,651 - -0.5 797,797 - +0.4 797,797 - +0.7 797,807 - -0.7 797,838 + +1.0 797,838 + -0.6 797,839 - +0.0 797,839 - +0.5 797,884 + -1.3 797,884 + -0.1 797,967 + +1.0 798,036 + +1.1 798,196 + +0.7 798,196 + -0.9 798,197 - +0.1 798,197 - -0.2 798,197 - +0.0 798,228 + +0.7 798,229 - -0.6 798,229 - -1.5 798,229 - -1.6 798,249 + +0.3 798,249 + -2.2 798,320 - -0.5 798,338 + -0.1 798,338 + -3.2 798,338 + +0.2 798,338 + +0.4 798,339 - -0.6 798,339 - +1.0 798,354 - +1.0 798,359 + +0.3 798,360 - +0.3 798,366 - -0.5 798,366 - +0.3 798,366 - +0.8 798,366 - +0.7 798,462 + +1.1 798,462 + -0.6 798,462 + +0.2 798,462 + +0.1 798,463 - -0.5 798,479 + -0.3 798,479 + +0.9 798,479 + +0.3 798,480 - -1.7 798,601 + RR42_RS24375 0.20 +0.4 798,601 + RR42_RS24375 0.20 -0.4 798,602 - RR42_RS24375 0.20 +0.1 798,602 - RR42_RS24375 0.20 +0.7 798,664 + RR42_RS24375 0.26 -0.5 798,665 - RR42_RS24375 0.26 +1.5 798,665 - RR42_RS24375 0.26 -0.2 798,665 - RR42_RS24375 0.26 -0.9 798,683 - RR42_RS24375 0.27 +0.5 798,809 + RR42_RS24375 0.38 -0.5 798,809 + RR42_RS24375 0.38 +0.2 798,810 - RR42_RS24375 0.38 +1.5 798,897 - RR42_RS24375 0.45 -1.0 798,931 + RR42_RS24375 0.48 -0.5 798,932 - RR42_RS24375 0.48 -0.6 799,031 + RR42_RS24375 0.57 -0.3 799,032 - RR42_RS24375 0.57 -0.7 799,061 + RR42_RS24375 0.59 +0.8 799,062 - RR42_RS24375 0.60 +1.1 799,062 - RR42_RS24375 0.60 +1.1 799,062 - RR42_RS24375 0.60 +1.6 799,062 - RR42_RS24375 0.60 -0.3 799,117 - RR42_RS24375 0.64 +2.0 799,117 - RR42_RS24375 0.64 -0.9 799,242 + RR42_RS24375 0.75 -1.7 799,243 - RR42_RS24375 0.75 -0.6 799,243 - RR42_RS24375 0.75 -0.1 799,243 - RR42_RS24375 0.75 +0.2 799,310 + RR42_RS24375 0.81 +1.3 799,318 + RR42_RS24375 0.81 +0.3 799,318 + RR42_RS24375 0.81 +0.5 799,318 + RR42_RS24375 0.81 -0.4 799,318 + RR42_RS24375 0.81 -0.9 799,319 - RR42_RS24375 0.81 -1.2 799,319 - RR42_RS24375 0.81 +0.2 799,324 + RR42_RS24375 0.82 -0.4 799,325 - RR42_RS24375 0.82 +0.7 799,340 + RR42_RS24375 0.83 -0.1 799,367 + RR42_RS24375 0.86 -0.6 799,431 + +1.0 799,432 - +0.2 799,508 + +0.3 799,509 - -0.3 799,556 - -0.3 799,599 + +0.9 799,599 + +0.3 799,599 + +0.1 799,644 + +1.0 799,644 + -0.4 799,645 - +0.8 799,645 - +0.2 799,756 + RR42_RS24380 0.15 +0.2 799,756 + RR42_RS24380 0.15 -0.4 799,756 + RR42_RS24380 0.15 +0.5 799,756 + RR42_RS24380 0.15 +0.0 799,757 - RR42_RS24380 0.15 +0.3 799,760 + RR42_RS24380 0.15 +0.5 799,760 + RR42_RS24380 0.15 +1.2 799,760 + RR42_RS24380 0.15 +1.4 799,760 + RR42_RS24380 0.15 +0.5 799,760 + RR42_RS24380 0.15 -0.4 799,760 + RR42_RS24380 0.15 +0.1 799,761 - RR42_RS24380 0.15 +0.8 799,761 - RR42_RS24380 0.15 +2.7 799,761 - RR42_RS24380 0.15 +0.1 799,761 - RR42_RS24380 0.15 -1.2 799,836 + RR42_RS24380 0.21 +0.3 799,854 + RR42_RS24380 0.22 -2.6 799,854 + RR42_RS24380 0.22 +0.4 799,854 + RR42_RS24380 0.22 -1.0 799,854 + RR42_RS24380 0.22 +0.1 799,855 - RR42_RS24380 0.22 +0.3 799,944 + RR42_RS24380 0.29 -0.1 799,945 - RR42_RS24380 0.29 +0.1 800,086 + RR42_RS24380 0.39 -1.0 800,101 + RR42_RS24380 0.40 +0.9 800,102 - RR42_RS24380 0.41 +0.4 800,125 + RR42_RS24380 0.42 -0.4 800,125 + RR42_RS24380 0.42 +0.3 800,125 + RR42_RS24380 0.42 -1.1 800,126 - RR42_RS24380 0.42 -0.1 800,126 - RR42_RS24380 0.42 -0.5 800,289 + RR42_RS24380 0.54 +1.1 800,420 + RR42_RS24380 0.64 -0.5 800,420 + RR42_RS24380 0.64 -0.5 800,421 - RR42_RS24380 0.64 +0.1 800,421 - RR42_RS24380 0.64 -1.0 800,455 + RR42_RS24380 0.67 +0.3 800,455 + RR42_RS24380 0.67 -0.9 800,456 - RR42_RS24380 0.67 -0.3 800,456 - RR42_RS24380 0.67 +0.4 800,456 - RR42_RS24380 0.67 +1.8 800,456 - RR42_RS24380 0.67 +0.1 800,456 - RR42_RS24380 0.67 -0.7 800,456 - RR42_RS24380 0.67 -0.5 800,473 + RR42_RS24380 0.68 +0.4 800,473 + RR42_RS24380 0.68 -2.7 800,508 + RR42_RS24380 0.71 +0.3 800,509 - RR42_RS24380 0.71 +1.7 800,509 - RR42_RS24380 0.71 +1.5
Or see this region's nucleotide sequence