Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23350 and RR42_RS23355 are separated by 126 nucleotides RR42_RS23355 and RR42_RS23360 are separated by 34 nucleotides RR42_RS23360 and RR42_RS23365 overlap by 4 nucleotides
RR42_RS23350: RR42_RS23350 - flagellar biosynthesis protein FliR, at 569,517 to 570,302
_RS23350
RR42_RS23355: RR42_RS23355 - flagellar biosynthetic protein FliQ, at 570,429 to 570,698
_RS23355
RR42_RS23360: RR42_RS23360 - flagellar biosynthesis protein flip, at 570,733 to 571,575
_RS23360
RR42_RS23365: RR42_RS23365 - flagellar biosynthesis protein FliO, at 571,572 to 572,042
_RS23365
Position (kb) 570
571 Strain fitness (log2 ratio) -2
-1
0
1
2 at 569.435 kb on + strand at 569.435 kb on + strand at 569.466 kb on + strand at 569.467 kb on - strand at 569.467 kb on - strand at 569.467 kb on - strand at 569.467 kb on - strand at 569.484 kb on - strand at 569.553 kb on - strand at 569.959 kb on + strand, within RR42_RS23350 at 569.959 kb on + strand, within RR42_RS23350 at 570.066 kb on + strand, within RR42_RS23350 at 570.066 kb on + strand, within RR42_RS23350 at 570.066 kb on + strand, within RR42_RS23350 at 570.067 kb on - strand, within RR42_RS23350 at 570.067 kb on - strand, within RR42_RS23350 at 570.274 kb on + strand at 570.472 kb on + strand, within RR42_RS23355 at 570.473 kb on - strand, within RR42_RS23355 at 570.682 kb on - strand at 570.871 kb on + strand, within RR42_RS23360 at 570.910 kb on - strand, within RR42_RS23360 at 571.134 kb on - strand, within RR42_RS23360 at 571.134 kb on - strand, within RR42_RS23360 at 571.145 kb on + strand, within RR42_RS23360 at 571.146 kb on - strand, within RR42_RS23360
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 569,435 + +0.6 569,435 + -1.8 569,466 + -1.3 569,467 - +0.6 569,467 - -0.5 569,467 - +0.6 569,467 - +0.4 569,484 - +0.2 569,553 - +0.5 569,959 + RR42_RS23350 0.56 -0.4 569,959 + RR42_RS23350 0.56 -0.1 570,066 + RR42_RS23350 0.70 +0.2 570,066 + RR42_RS23350 0.70 +0.1 570,066 + RR42_RS23350 0.70 +0.5 570,067 - RR42_RS23350 0.70 -0.8 570,067 - RR42_RS23350 0.70 +0.2 570,274 + +1.4 570,472 + RR42_RS23355 0.16 -0.1 570,473 - RR42_RS23355 0.16 -1.8 570,682 - -1.4 570,871 + RR42_RS23360 0.16 -0.6 570,910 - RR42_RS23360 0.21 +0.3 571,134 - RR42_RS23360 0.48 -0.1 571,134 - RR42_RS23360 0.48 +0.9 571,145 + RR42_RS23360 0.49 +1.8 571,146 - RR42_RS23360 0.49 -0.7
Or see this region's nucleotide sequence