Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23150 and RR42_RS23155 are separated by 63 nucleotides RR42_RS23155 and RR42_RS23160 are separated by 11 nucleotides
RR42_RS23150: RR42_RS23150 - ABC transporter substrate-binding protein, at 525,856 to 526,839
_RS23150
RR42_RS23155: RR42_RS23155 - acyl-CoA dehydrogenase, at 526,903 to 528,084
_RS23155
RR42_RS23160: RR42_RS23160 - AMP-dependent synthetase, at 528,096 to 529,649
_RS23160
Position (kb) 526
527
528
529 Strain fitness (log2 ratio) -2
-1
0
1 at 526.202 kb on + strand, within RR42_RS23150 at 526.286 kb on + strand, within RR42_RS23150 at 526.373 kb on + strand, within RR42_RS23150 at 526.430 kb on + strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.574 kb on + strand, within RR42_RS23150 at 526.575 kb on - strand, within RR42_RS23150 at 526.839 kb on + strand at 526.840 kb on - strand at 526.856 kb on - strand at 526.947 kb on + strand at 526.947 kb on + strand at 527.057 kb on - strand, within RR42_RS23155 at 527.057 kb on - strand, within RR42_RS23155 at 527.270 kb on + strand, within RR42_RS23155 at 527.288 kb on + strand, within RR42_RS23155 at 527.289 kb on - strand, within RR42_RS23155 at 527.439 kb on + strand, within RR42_RS23155 at 527.440 kb on - strand, within RR42_RS23155 at 527.462 kb on + strand, within RR42_RS23155 at 527.462 kb on + strand, within RR42_RS23155 at 527.592 kb on - strand, within RR42_RS23155 at 527.592 kb on - strand, within RR42_RS23155 at 527.729 kb on + strand, within RR42_RS23155 at 527.756 kb on + strand, within RR42_RS23155 at 527.756 kb on + strand, within RR42_RS23155 at 527.756 kb on + strand, within RR42_RS23155 at 527.757 kb on - strand, within RR42_RS23155 at 527.766 kb on + strand, within RR42_RS23155 at 527.766 kb on + strand, within RR42_RS23155 at 527.766 kb on + strand, within RR42_RS23155 at 527.766 kb on + strand, within RR42_RS23155 at 527.767 kb on - strand, within RR42_RS23155 at 527.912 kb on + strand, within RR42_RS23155 at 527.912 kb on + strand, within RR42_RS23155 at 527.913 kb on - strand, within RR42_RS23155 at 527.913 kb on - strand, within RR42_RS23155 at 528.026 kb on + strand at 528.027 kb on - strand at 528.098 kb on - strand at 528.114 kb on + strand at 528.365 kb on - strand, within RR42_RS23160 at 528.365 kb on - strand, within RR42_RS23160 at 528.442 kb on + strand, within RR42_RS23160 at 528.443 kb on - strand, within RR42_RS23160 at 528.443 kb on - strand, within RR42_RS23160 at 528.443 kb on - strand, within RR42_RS23160 at 528.448 kb on + strand, within RR42_RS23160 at 528.449 kb on - strand, within RR42_RS23160 at 528.449 kb on - strand, within RR42_RS23160 at 528.449 kb on - strand, within RR42_RS23160 at 528.742 kb on + strand, within RR42_RS23160 at 528.818 kb on - strand, within RR42_RS23160 at 528.878 kb on + strand, within RR42_RS23160 at 528.878 kb on + strand, within RR42_RS23160 at 528.878 kb on + strand, within RR42_RS23160 at 528.878 kb on + strand, within RR42_RS23160 at 528.989 kb on - strand, within RR42_RS23160 at 528.989 kb on - strand, within RR42_RS23160 at 528.994 kb on + strand, within RR42_RS23160 at 528.995 kb on - strand, within RR42_RS23160 at 528.995 kb on - strand, within RR42_RS23160
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 526,202 + RR42_RS23150 0.35 -0.0 526,286 + RR42_RS23150 0.44 +0.5 526,373 + RR42_RS23150 0.53 +0.6 526,430 + RR42_RS23150 0.58 +0.6 526,431 - RR42_RS23150 0.58 -0.2 526,431 - RR42_RS23150 0.58 -0.7 526,431 - RR42_RS23150 0.58 +1.4 526,431 - RR42_RS23150 0.58 +0.4 526,431 - RR42_RS23150 0.58 -0.4 526,431 - RR42_RS23150 0.58 -0.1 526,574 + RR42_RS23150 0.73 +1.5 526,575 - RR42_RS23150 0.73 +0.5 526,839 + +0.3 526,840 - +0.5 526,856 - +0.6 526,947 + +0.6 526,947 + +0.3 527,057 - RR42_RS23155 0.13 +1.2 527,057 - RR42_RS23155 0.13 +0.7 527,270 + RR42_RS23155 0.31 +1.0 527,288 + RR42_RS23155 0.33 -0.8 527,289 - RR42_RS23155 0.33 -0.5 527,439 + RR42_RS23155 0.45 -1.8 527,440 - RR42_RS23155 0.45 +1.2 527,462 + RR42_RS23155 0.47 +0.9 527,462 + RR42_RS23155 0.47 +0.1 527,592 - RR42_RS23155 0.58 +0.2 527,592 - RR42_RS23155 0.58 +0.2 527,729 + RR42_RS23155 0.70 +1.0 527,756 + RR42_RS23155 0.72 -0.1 527,756 + RR42_RS23155 0.72 +0.6 527,756 + RR42_RS23155 0.72 -0.7 527,757 - RR42_RS23155 0.72 +0.0 527,766 + RR42_RS23155 0.73 +0.0 527,766 + RR42_RS23155 0.73 -0.0 527,766 + RR42_RS23155 0.73 -0.6 527,766 + RR42_RS23155 0.73 -1.5 527,767 - RR42_RS23155 0.73 +0.9 527,912 + RR42_RS23155 0.85 +0.8 527,912 + RR42_RS23155 0.85 +1.2 527,913 - RR42_RS23155 0.85 -0.2 527,913 - RR42_RS23155 0.85 +1.2 528,026 + +0.4 528,027 - -0.7 528,098 - +0.3 528,114 + +0.8 528,365 - RR42_RS23160 0.17 -1.3 528,365 - RR42_RS23160 0.17 -1.1 528,442 + RR42_RS23160 0.22 -1.4 528,443 - RR42_RS23160 0.22 -0.3 528,443 - RR42_RS23160 0.22 -1.1 528,443 - RR42_RS23160 0.22 -0.9 528,448 + RR42_RS23160 0.23 -0.3 528,449 - RR42_RS23160 0.23 -1.1 528,449 - RR42_RS23160 0.23 +0.4 528,449 - RR42_RS23160 0.23 -0.0 528,742 + RR42_RS23160 0.42 +0.1 528,818 - RR42_RS23160 0.46 -1.0 528,878 + RR42_RS23160 0.50 +0.4 528,878 + RR42_RS23160 0.50 +0.1 528,878 + RR42_RS23160 0.50 -0.7 528,878 + RR42_RS23160 0.50 +0.1 528,989 - RR42_RS23160 0.57 -0.5 528,989 - RR42_RS23160 0.57 -0.8 528,994 + RR42_RS23160 0.58 +1.7 528,995 - RR42_RS23160 0.58 -1.0 528,995 - RR42_RS23160 0.58 -0.3
Or see this region's nucleotide sequence