Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18840 and RR42_RS18845 are separated by 492 nucleotides RR42_RS18845 and RR42_RS18850 are separated by 247 nucleotides
RR42_RS18840: RR42_RS18840 - 2-alkenal reductase, at 4,084,338 to 4,085,531
_RS18840
RR42_RS18845: RR42_RS18845 - membrane protein, at 4,086,024 to 4,087,124
_RS18845
RR42_RS18850: RR42_RS18850 - preprotein translocase subunit TatC, at 4,087,372 to 4,088,169
_RS18850
Position (kb)
4086
4087
4088 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4085.101 kb on - strand, within RR42_RS18840 at 4085.101 kb on - strand, within RR42_RS18840 at 4085.101 kb on - strand, within RR42_RS18840 at 4085.370 kb on - strand, within RR42_RS18840 at 4085.465 kb on - strand at 4085.465 kb on - strand at 4085.465 kb on - strand at 4085.465 kb on - strand at 4085.465 kb on - strand at 4085.562 kb on + strand at 4085.563 kb on - strand at 4085.563 kb on - strand at 4085.570 kb on + strand at 4085.570 kb on + strand at 4085.570 kb on + strand at 4085.570 kb on + strand at 4085.571 kb on - strand at 4085.571 kb on - strand at 4085.571 kb on - strand at 4085.571 kb on - strand at 4085.634 kb on - strand at 4085.686 kb on + strand at 4085.754 kb on + strand at 4085.755 kb on - strand at 4085.853 kb on + strand at 4085.853 kb on + strand at 4085.853 kb on + strand at 4085.853 kb on + strand at 4085.853 kb on + strand at 4085.854 kb on - strand at 4085.854 kb on - strand at 4085.854 kb on - strand at 4085.883 kb on - strand at 4085.932 kb on + strand at 4085.998 kb on + strand at 4085.998 kb on + strand at 4085.998 kb on + strand at 4086.026 kb on - strand at 4087.298 kb on + strand at 4087.299 kb on - strand at 4087.333 kb on - strand at 4087.455 kb on - strand, within RR42_RS18850 at 4087.548 kb on - strand, within RR42_RS18850 at 4087.548 kb on - strand, within RR42_RS18850 at 4087.670 kb on + strand, within RR42_RS18850 at 4087.758 kb on - strand, within RR42_RS18850
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 4,085,101 - RR42_RS18840 0.64 -1.5 4,085,101 - RR42_RS18840 0.64 -1.0 4,085,101 - RR42_RS18840 0.64 -3.1 4,085,370 - RR42_RS18840 0.86 -0.2 4,085,465 - -0.9 4,085,465 - -1.3 4,085,465 - -1.2 4,085,465 - -1.9 4,085,465 - -0.4 4,085,562 + -0.3 4,085,563 - -1.1 4,085,563 - -0.3 4,085,570 + +0.6 4,085,570 + -0.1 4,085,570 + -0.3 4,085,570 + +1.9 4,085,571 - -0.2 4,085,571 - +0.6 4,085,571 - +0.8 4,085,571 - +2.8 4,085,634 - -0.7 4,085,686 + -0.0 4,085,754 + +0.6 4,085,755 - -1.8 4,085,853 + -0.4 4,085,853 + +1.4 4,085,853 + -0.9 4,085,853 + -0.8 4,085,853 + +1.8 4,085,854 - +1.8 4,085,854 - -1.8 4,085,854 - -1.4 4,085,883 - -0.3 4,085,932 + -0.8 4,085,998 + -1.2 4,085,998 + -1.4 4,085,998 + -0.7 4,086,026 - -1.4 4,087,298 + -3.4 4,087,299 - -0.0 4,087,333 - +1.0 4,087,455 - RR42_RS18850 0.10 -2.3 4,087,548 - RR42_RS18850 0.22 -2.4 4,087,548 - RR42_RS18850 0.22 -2.9 4,087,670 + RR42_RS18850 0.37 -1.4 4,087,758 - RR42_RS18850 0.48 -1.4
Or see this region's nucleotide sequence