Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03900

Experiment: R2A with Chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03890 and RR42_RS03895 overlap by 4 nucleotidesRR42_RS03895 and RR42_RS03900 are separated by 29 nucleotidesRR42_RS03900 and RR42_RS03905 are separated by 124 nucleotides RR42_RS03890: RR42_RS03890 - paraquat-inducible protein A, at 858,304 to 859,038 _RS03890 RR42_RS03895: RR42_RS03895 - paraquat-inducible protein A, at 859,035 to 859,667 _RS03895 RR42_RS03900: RR42_RS03900 - membrane protein, at 859,697 to 860,821 _RS03900 RR42_RS03905: RR42_RS03905 - hypothetical protein, at 860,946 to 861,863 _RS03905 Position (kb) 859 860 861Strain fitness (log2 ratio) -2 -1 0 1at 858.750 kb on - strand, within RR42_RS03890at 859.300 kb on + strand, within RR42_RS03895at 859.301 kb on - strand, within RR42_RS03895at 859.456 kb on + strand, within RR42_RS03895at 859.516 kb on + strand, within RR42_RS03895at 859.517 kb on - strand, within RR42_RS03895at 859.844 kb on - strand, within RR42_RS03900at 860.022 kb on + strand, within RR42_RS03900at 860.089 kb on + strand, within RR42_RS03900at 860.090 kb on - strand, within RR42_RS03900at 860.184 kb on + strand, within RR42_RS03900at 860.184 kb on + strand, within RR42_RS03900at 860.299 kb on - strand, within RR42_RS03900at 860.464 kb on - strand, within RR42_RS03900at 860.464 kb on - strand, within RR42_RS03900at 860.583 kb on + strand, within RR42_RS03900at 860.677 kb on + strand, within RR42_RS03900at 860.678 kb on - strand, within RR42_RS03900at 860.678 kb on - strand, within RR42_RS03900at 860.678 kb on - strand, within RR42_RS03900at 860.680 kb on - strand, within RR42_RS03900at 860.685 kb on + strand, within RR42_RS03900at 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.868 kb on + strandat 860.869 kb on - strandat 860.870 kb on + strandat 860.871 kb on - strandat 860.947 kb on + strandat 860.947 kb on + strandat 860.948 kb on - strandat 860.954 kb on + strandat 860.954 kb on + strandat 860.954 kb on + strandat 860.955 kb on - strandat 860.955 kb on - strandat 860.988 kb on + strandat 860.988 kb on + strandat 861.064 kb on + strand, within RR42_RS03905at 861.281 kb on + strand, within RR42_RS03905at 861.281 kb on + strand, within RR42_RS03905at 861.282 kb on - strand, within RR42_RS03905at 861.282 kb on - strand, within RR42_RS03905at 861.282 kb on - strand, within RR42_RS03905at 861.539 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.557 kb on - strand, within RR42_RS03905at 861.590 kb on - strand, within RR42_RS03905at 861.784 kb on - strandat 861.785 kb on + strandat 861.785 kb on + strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM
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858,750 - RR42_RS03890 0.61 +0.3
859,300 + RR42_RS03895 0.42 +0.5
859,301 - RR42_RS03895 0.42 -1.5
859,456 + RR42_RS03895 0.67 -1.1
859,516 + RR42_RS03895 0.76 -0.0
859,517 - RR42_RS03895 0.76 -0.7
859,844 - RR42_RS03900 0.13 +0.3
860,022 + RR42_RS03900 0.29 -0.1
860,089 + RR42_RS03900 0.35 +0.1
860,090 - RR42_RS03900 0.35 +0.6
860,184 + RR42_RS03900 0.43 +0.0
860,184 + RR42_RS03900 0.43 -0.2
860,299 - RR42_RS03900 0.54 +0.2
860,464 - RR42_RS03900 0.68 +0.9
860,464 - RR42_RS03900 0.68 -0.6
860,583 + RR42_RS03900 0.79 -1.0
860,677 + RR42_RS03900 0.87 -0.5
860,678 - RR42_RS03900 0.87 +1.0
860,678 - RR42_RS03900 0.87 -1.0
860,678 - RR42_RS03900 0.87 -0.2
860,680 - RR42_RS03900 0.87 +1.6
860,685 + RR42_RS03900 0.88 +0.2
860,866 + +0.9
860,866 + +0.5
860,866 + -0.2
860,866 + +0.9
860,866 + +0.2
860,866 + +0.7
860,866 + -1.8
860,866 + -0.6
860,866 + -0.2
860,866 + +1.1
860,867 - -1.2
860,867 - +0.5
860,867 - -0.3
860,867 - -0.7
860,867 - -0.3
860,867 - +0.5
860,867 - -0.6
860,867 - -1.3
860,868 + +0.0
860,869 - +0.7
860,870 + +0.6
860,871 - -0.8
860,947 + +1.6
860,947 + +0.9
860,948 - +1.3
860,954 + +0.6
860,954 + -0.6
860,954 + +0.5
860,955 - +0.5
860,955 - +0.0
860,988 + -0.2
860,988 + -1.6
861,064 + RR42_RS03905 0.13 +0.5
861,281 + RR42_RS03905 0.36 -1.0
861,281 + RR42_RS03905 0.36 +1.6
861,282 - RR42_RS03905 0.37 +1.6
861,282 - RR42_RS03905 0.37 +1.0
861,282 - RR42_RS03905 0.37 -0.6
861,539 + RR42_RS03905 0.65 +0.2
861,556 + RR42_RS03905 0.66 -0.0
861,556 + RR42_RS03905 0.66 +1.0
861,556 + RR42_RS03905 0.66 +0.8
861,556 + RR42_RS03905 0.66 -1.3
861,556 + RR42_RS03905 0.66 +0.1
861,557 - RR42_RS03905 0.67 +0.9
861,590 - RR42_RS03905 0.70 +0.6
861,784 - +1.1
861,785 + +0.3
861,785 + +1.4
861,786 - -0.4
861,786 - -0.1
861,786 - -0.0
861,786 - +0.4
861,786 - -0.0
861,786 - -0.1
861,786 - -1.0
861,786 - -0.5

Or see this region's nucleotide sequence