Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3993

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3992 and Pf6N2E2_3993 are separated by 16 nucleotidesPf6N2E2_3993 and Pf6N2E2_3994 overlap by 48 nucleotides Pf6N2E2_3992 - Fe2+-dicitrate sensor, membrane component, at 4,661,307 to 4,662,308 _3992 Pf6N2E2_3993 - hypothetical protein, at 4,662,325 to 4,662,441 _3993 Pf6N2E2_3994 - Ferrichrome-iron receptor, at 4,662,394 to 4,664,898 _3994 Position (kb) 4662 4663Strain fitness (log2 ratio) -2 -1 0 1at 4662.015 kb on + strand, within Pf6N2E2_3992at 4662.015 kb on + strand, within Pf6N2E2_3992at 4662.015 kb on + strand, within Pf6N2E2_3992at 4662.016 kb on - strand, within Pf6N2E2_3992at 4662.133 kb on + strand, within Pf6N2E2_3992at 4662.133 kb on + strand, within Pf6N2E2_3992at 4662.133 kb on + strand, within Pf6N2E2_3992at 4662.134 kb on - strand, within Pf6N2E2_3992at 4662.134 kb on - strand, within Pf6N2E2_3992at 4662.134 kb on - strand, within Pf6N2E2_3992at 4662.134 kb on - strand, within Pf6N2E2_3992at 4662.134 kb on - strand, within Pf6N2E2_3992at 4662.153 kb on + strand, within Pf6N2E2_3992at 4662.155 kb on + strand, within Pf6N2E2_3992at 4662.155 kb on + strand, within Pf6N2E2_3992at 4662.155 kb on + strand, within Pf6N2E2_3992at 4662.155 kb on + strand, within Pf6N2E2_3992at 4662.156 kb on - strand, within Pf6N2E2_3992at 4662.156 kb on - strand, within Pf6N2E2_3992at 4662.156 kb on - strand, within Pf6N2E2_3992at 4662.156 kb on - strand, within Pf6N2E2_3992at 4662.156 kb on - strand, within Pf6N2E2_3992at 4662.156 kb on - strand, within Pf6N2E2_3992at 4662.156 kb on - strand, within Pf6N2E2_3992at 4662.350 kb on + strand, within Pf6N2E2_3993at 4662.350 kb on + strand, within Pf6N2E2_3993at 4662.350 kb on + strand, within Pf6N2E2_3993at 4662.350 kb on + strand, within Pf6N2E2_3993at 4662.351 kb on - strand, within Pf6N2E2_3993at 4662.351 kb on - strand, within Pf6N2E2_3993at 4662.361 kb on + strand, within Pf6N2E2_3993at 4662.361 kb on + strand, within Pf6N2E2_3993at 4662.362 kb on - strand, within Pf6N2E2_3993at 4662.362 kb on - strand, within Pf6N2E2_3993at 4662.362 kb on - strand, within Pf6N2E2_3993at 4662.390 kb on + strand, within Pf6N2E2_3993at 4662.390 kb on + strand, within Pf6N2E2_3993at 4662.390 kb on + strand, within Pf6N2E2_3993at 4662.390 kb on + strand, within Pf6N2E2_3993at 4662.390 kb on + strand, within Pf6N2E2_3993at 4662.391 kb on - strand, within Pf6N2E2_3993at 4662.391 kb on - strand, within Pf6N2E2_3993at 4662.391 kb on - strand, within Pf6N2E2_3993at 4662.391 kb on - strand, within Pf6N2E2_3993at 4662.407 kb on + strandat 4662.407 kb on + strandat 4662.407 kb on + strandat 4662.560 kb on - strandat 4662.560 kb on - strandat 4662.682 kb on + strand, within Pf6N2E2_3994at 4662.757 kb on + strand, within Pf6N2E2_3994at 4662.757 kb on + strand, within Pf6N2E2_3994at 4662.758 kb on - strand, within Pf6N2E2_3994at 4662.758 kb on - strand, within Pf6N2E2_3994at 4662.758 kb on - strand, within Pf6N2E2_3994at 4662.758 kb on - strand, within Pf6N2E2_3994at 4662.856 kb on + strand, within Pf6N2E2_3994at 4662.988 kb on + strand, within Pf6N2E2_3994at 4662.989 kb on - strand, within Pf6N2E2_3994at 4662.989 kb on - strand, within Pf6N2E2_3994at 4663.039 kb on + strand, within Pf6N2E2_3994at 4663.039 kb on + strand, within Pf6N2E2_3994at 4663.039 kb on + strand, within Pf6N2E2_3994at 4663.039 kb on + strand, within Pf6N2E2_3994at 4663.039 kb on + strand, within Pf6N2E2_3994at 4663.039 kb on + strand, within Pf6N2E2_3994at 4663.039 kb on + strand, within Pf6N2E2_3994at 4663.040 kb on - strand, within Pf6N2E2_3994at 4663.040 kb on - strand, within Pf6N2E2_3994at 4663.077 kb on + strand, within Pf6N2E2_3994at 4663.084 kb on + strand, within Pf6N2E2_3994at 4663.084 kb on + strand, within Pf6N2E2_3994at 4663.084 kb on + strand, within Pf6N2E2_3994at 4663.084 kb on + strand, within Pf6N2E2_3994at 4663.085 kb on - strand, within Pf6N2E2_3994at 4663.085 kb on - strand, within Pf6N2E2_3994at 4663.123 kb on + strand, within Pf6N2E2_3994at 4663.123 kb on + strand, within Pf6N2E2_3994at 4663.123 kb on + strand, within Pf6N2E2_3994at 4663.123 kb on + strand, within Pf6N2E2_3994at 4663.123 kb on + strand, within Pf6N2E2_3994at 4663.123 kb on + strand, within Pf6N2E2_3994at 4663.123 kb on + strand, within Pf6N2E2_3994at 4663.123 kb on + strand, within Pf6N2E2_3994at 4663.124 kb on - strand, within Pf6N2E2_3994at 4663.124 kb on - strand, within Pf6N2E2_3994at 4663.124 kb on - strand, within Pf6N2E2_3994at 4663.124 kb on - strand, within Pf6N2E2_3994at 4663.124 kb on - strand, within Pf6N2E2_3994at 4663.124 kb on - strand, within Pf6N2E2_3994at 4663.124 kb on - strand, within Pf6N2E2_3994at 4663.124 kb on - strand, within Pf6N2E2_3994at 4663.148 kb on - strand, within Pf6N2E2_3994at 4663.148 kb on - strand, within Pf6N2E2_3994at 4663.196 kb on - strand, within Pf6N2E2_3994at 4663.196 kb on - strand, within Pf6N2E2_3994at 4663.249 kb on + strand, within Pf6N2E2_3994at 4663.249 kb on + strand, within Pf6N2E2_3994at 4663.351 kb on + strand, within Pf6N2E2_3994at 4663.351 kb on + strand, within Pf6N2E2_3994at 4663.352 kb on - strand, within Pf6N2E2_3994at 4663.352 kb on - strand, within Pf6N2E2_3994at 4663.352 kb on - strand, within Pf6N2E2_3994

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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4,662,015 + Pf6N2E2_3992 0.71 -0.1
4,662,015 + Pf6N2E2_3992 0.71 +0.6
4,662,015 + Pf6N2E2_3992 0.71 +1.2
4,662,016 - Pf6N2E2_3992 0.71 -0.3
4,662,133 + Pf6N2E2_3992 0.82 +0.7
4,662,133 + Pf6N2E2_3992 0.82 +0.6
4,662,133 + Pf6N2E2_3992 0.82 -0.0
4,662,134 - Pf6N2E2_3992 0.83 +1.1
4,662,134 - Pf6N2E2_3992 0.83 +1.2
4,662,134 - Pf6N2E2_3992 0.83 +0.2
4,662,134 - Pf6N2E2_3992 0.83 +0.4
4,662,134 - Pf6N2E2_3992 0.83 +0.7
4,662,153 + Pf6N2E2_3992 0.84 +0.5
4,662,155 + Pf6N2E2_3992 0.85 -0.3
4,662,155 + Pf6N2E2_3992 0.85 +0.3
4,662,155 + Pf6N2E2_3992 0.85 -0.4
4,662,155 + Pf6N2E2_3992 0.85 +0.3
4,662,156 - Pf6N2E2_3992 0.85 +0.2
4,662,156 - Pf6N2E2_3992 0.85 -0.9
4,662,156 - Pf6N2E2_3992 0.85 +0.2
4,662,156 - Pf6N2E2_3992 0.85 -0.1
4,662,156 - Pf6N2E2_3992 0.85 -0.1
4,662,156 - Pf6N2E2_3992 0.85 -0.0
4,662,156 - Pf6N2E2_3992 0.85 +0.8
4,662,350 + Pf6N2E2_3993 0.21 -0.7
4,662,350 + Pf6N2E2_3993 0.21 -0.0
4,662,350 + Pf6N2E2_3993 0.21 +0.4
4,662,350 + Pf6N2E2_3993 0.21 +0.5
4,662,351 - Pf6N2E2_3993 0.22 +0.0
4,662,351 - Pf6N2E2_3993 0.22 +0.1
4,662,361 + Pf6N2E2_3993 0.31 -0.6
4,662,361 + Pf6N2E2_3993 0.31 -0.7
4,662,362 - Pf6N2E2_3993 0.32 -2.2
4,662,362 - Pf6N2E2_3993 0.32 -0.1
4,662,362 - Pf6N2E2_3993 0.32 -0.7
4,662,390 + Pf6N2E2_3993 0.56 -0.4
4,662,390 + Pf6N2E2_3993 0.56 -1.2
4,662,390 + Pf6N2E2_3993 0.56 +0.1
4,662,390 + Pf6N2E2_3993 0.56 +0.3
4,662,390 + Pf6N2E2_3993 0.56 -0.4
4,662,391 - Pf6N2E2_3993 0.56 +0.4
4,662,391 - Pf6N2E2_3993 0.56 -1.0
4,662,391 - Pf6N2E2_3993 0.56 -0.4
4,662,391 - Pf6N2E2_3993 0.56 +0.4
4,662,407 + -0.4
4,662,407 + +0.1
4,662,407 + +0.6
4,662,560 - +0.4
4,662,560 - -0.1
4,662,682 + Pf6N2E2_3994 0.11 +0.5
4,662,757 + Pf6N2E2_3994 0.14 +0.0
4,662,757 + Pf6N2E2_3994 0.14 +0.7
4,662,758 - Pf6N2E2_3994 0.15 +0.2
4,662,758 - Pf6N2E2_3994 0.15 -0.8
4,662,758 - Pf6N2E2_3994 0.15 +0.0
4,662,758 - Pf6N2E2_3994 0.15 -0.2
4,662,856 + Pf6N2E2_3994 0.18 -1.3
4,662,988 + Pf6N2E2_3994 0.24 +0.4
4,662,989 - Pf6N2E2_3994 0.24 -0.8
4,662,989 - Pf6N2E2_3994 0.24 +0.4
4,663,039 + Pf6N2E2_3994 0.26 -1.2
4,663,039 + Pf6N2E2_3994 0.26 +0.7
4,663,039 + Pf6N2E2_3994 0.26 -1.1
4,663,039 + Pf6N2E2_3994 0.26 -0.1
4,663,039 + Pf6N2E2_3994 0.26 +0.8
4,663,039 + Pf6N2E2_3994 0.26 -0.6
4,663,039 + Pf6N2E2_3994 0.26 +0.7
4,663,040 - Pf6N2E2_3994 0.26 -0.2
4,663,040 - Pf6N2E2_3994 0.26 +0.7
4,663,077 + Pf6N2E2_3994 0.27 -0.8
4,663,084 + Pf6N2E2_3994 0.28 +0.5
4,663,084 + Pf6N2E2_3994 0.28 -0.4
4,663,084 + Pf6N2E2_3994 0.28 +0.1
4,663,084 + Pf6N2E2_3994 0.28 +0.4
4,663,085 - Pf6N2E2_3994 0.28 +0.6
4,663,085 - Pf6N2E2_3994 0.28 -0.4
4,663,123 + Pf6N2E2_3994 0.29 +0.2
4,663,123 + Pf6N2E2_3994 0.29 -1.1
4,663,123 + Pf6N2E2_3994 0.29 -1.3
4,663,123 + Pf6N2E2_3994 0.29 -0.2
4,663,123 + Pf6N2E2_3994 0.29 +0.3
4,663,123 + Pf6N2E2_3994 0.29 +0.3
4,663,123 + Pf6N2E2_3994 0.29 +0.6
4,663,123 + Pf6N2E2_3994 0.29 -0.1
4,663,124 - Pf6N2E2_3994 0.29 +0.6
4,663,124 - Pf6N2E2_3994 0.29 -0.9
4,663,124 - Pf6N2E2_3994 0.29 -0.1
4,663,124 - Pf6N2E2_3994 0.29 -1.4
4,663,124 - Pf6N2E2_3994 0.29 +1.3
4,663,124 - Pf6N2E2_3994 0.29 +0.2
4,663,124 - Pf6N2E2_3994 0.29 -0.2
4,663,124 - Pf6N2E2_3994 0.29 +0.5
4,663,148 - Pf6N2E2_3994 0.30 +0.0
4,663,148 - Pf6N2E2_3994 0.30 +0.3
4,663,196 - Pf6N2E2_3994 0.32 -0.3
4,663,196 - Pf6N2E2_3994 0.32 +0.7
4,663,249 + Pf6N2E2_3994 0.34 +0.5
4,663,249 + Pf6N2E2_3994 0.34 +0.4
4,663,351 + Pf6N2E2_3994 0.38 +0.7
4,663,351 + Pf6N2E2_3994 0.38 +0.3
4,663,352 - Pf6N2E2_3994 0.38 +0.9
4,663,352 - Pf6N2E2_3994 0.38 +0.3
4,663,352 - Pf6N2E2_3994 0.38 +1.3

Or see this region's nucleotide sequence