Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1488

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1487 and Pf6N2E2_1488 are separated by 39 nucleotidesPf6N2E2_1488 and Pf6N2E2_1489 are separated by 797 nucleotides Pf6N2E2_1487 - hypothetical protein, at 1,738,522 to 1,739,610 _1487 Pf6N2E2_1488 - hypothetical protein, at 1,739,650 to 1,740,948 _1488 Pf6N2E2_1489 - hypothetical protein, at 1,741,746 to 1,741,889 _1489 Position (kb) 1739 1740 1741Strain fitness (log2 ratio) -1 0 1 2at 1738.685 kb on + strand, within Pf6N2E2_1487at 1739.102 kb on + strand, within Pf6N2E2_1487at 1740.278 kb on - strand, within Pf6N2E2_1488at 1740.518 kb on - strand, within Pf6N2E2_1488at 1740.518 kb on - strand, within Pf6N2E2_1488at 1740.586 kb on - strand, within Pf6N2E2_1488at 1740.586 kb on - strand, within Pf6N2E2_1488at 1740.586 kb on - strand, within Pf6N2E2_1488at 1740.587 kb on + strand, within Pf6N2E2_1488at 1740.588 kb on - strand, within Pf6N2E2_1488at 1740.588 kb on - strand, within Pf6N2E2_1488at 1740.643 kb on - strand, within Pf6N2E2_1488at 1740.655 kb on + strand, within Pf6N2E2_1488at 1740.657 kb on + strand, within Pf6N2E2_1488at 1740.657 kb on + strand, within Pf6N2E2_1488at 1740.756 kb on + strand, within Pf6N2E2_1488at 1740.770 kb on + strand, within Pf6N2E2_1488at 1740.794 kb on + strand, within Pf6N2E2_1488at 1740.794 kb on + strand, within Pf6N2E2_1488at 1740.794 kb on + strand, within Pf6N2E2_1488at 1740.794 kb on + strand, within Pf6N2E2_1488at 1740.909 kb on - strandat 1740.909 kb on - strandat 1741.144 kb on - strandat 1741.268 kb on + strandat 1741.379 kb on - strandat 1741.516 kb on - strandat 1741.559 kb on + strandat 1741.658 kb on + strandat 1741.658 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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1,738,685 + Pf6N2E2_1487 0.15 +1.6
1,739,102 + Pf6N2E2_1487 0.53 +1.3
1,740,278 - Pf6N2E2_1488 0.48 +1.8
1,740,518 - Pf6N2E2_1488 0.67 -0.5
1,740,518 - Pf6N2E2_1488 0.67 +0.1
1,740,586 - Pf6N2E2_1488 0.72 -0.9
1,740,586 - Pf6N2E2_1488 0.72 +1.2
1,740,586 - Pf6N2E2_1488 0.72 +0.8
1,740,587 + Pf6N2E2_1488 0.72 +0.8
1,740,588 - Pf6N2E2_1488 0.72 -0.8
1,740,588 - Pf6N2E2_1488 0.72 +1.0
1,740,643 - Pf6N2E2_1488 0.76 +0.1
1,740,655 + Pf6N2E2_1488 0.77 +1.7
1,740,657 + Pf6N2E2_1488 0.78 -0.1
1,740,657 + Pf6N2E2_1488 0.78 +0.7
1,740,756 + Pf6N2E2_1488 0.85 +0.9
1,740,770 + Pf6N2E2_1488 0.86 +1.8
1,740,794 + Pf6N2E2_1488 0.88 +0.5
1,740,794 + Pf6N2E2_1488 0.88 +0.7
1,740,794 + Pf6N2E2_1488 0.88 -1.1
1,740,794 + Pf6N2E2_1488 0.88 +1.2
1,740,909 - +0.4
1,740,909 - +0.4
1,741,144 - -1.0
1,741,268 + -1.6
1,741,379 - +0.1
1,741,516 - -0.0
1,741,559 + +0.0
1,741,658 + +0.4
1,741,658 + +0.7

Or see this region's nucleotide sequence