Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5891 and Pf1N1B4_5892 overlap by 34 nucleotides Pf1N1B4_5892 and Pf1N1B4_5893 overlap by 4 nucleotides Pf1N1B4_5893 and Pf1N1B4_5894 overlap by 8 nucleotides
Pf1N1B4_5891 - FIG00961753: hypothetical protein, at 334,853 to 336,067
_5891
Pf1N1B4_5892 - FIG00961753: hypothetical protein, at 336,034 to 336,216
_5892
Pf1N1B4_5893 - Mycofactocin system glycosyltransferase, at 336,213 to 337,190
_5893
Pf1N1B4_5894 - Glycosyltransferase, at 337,183 to 338,319
_5894
Position (kb) 336
337 Strain fitness (log2 ratio) -2
-1
0
1 at 335.177 kb on + strand, within Pf1N1B4_5891 at 335.299 kb on + strand at 335.682 kb on - strand, within Pf1N1B4_5891 at 335.779 kb on + strand at 335.928 kb on + strand at 335.928 kb on + strand, within Pf1N1B4_5891 at 335.929 kb on - strand, within Pf1N1B4_5891 at 335.929 kb on - strand, within Pf1N1B4_5891 at 335.929 kb on - strand, within Pf1N1B4_5891 at 335.932 kb on + strand, within Pf1N1B4_5891 at 335.932 kb on + strand, within Pf1N1B4_5891 at 336.004 kb on + strand at 336.004 kb on + strand at 336.004 kb on + strand at 336.004 kb on + strand at 336.005 kb on - strand at 336.088 kb on + strand, within Pf1N1B4_5892 at 336.088 kb on + strand, within Pf1N1B4_5892 at 336.088 kb on + strand, within Pf1N1B4_5892 at 336.088 kb on + strand, within Pf1N1B4_5892 at 336.088 kb on + strand at 336.088 kb on + strand, within Pf1N1B4_5892 at 336.088 kb on + strand, within Pf1N1B4_5892 at 336.089 kb on - strand, within Pf1N1B4_5892 at 336.089 kb on - strand, within Pf1N1B4_5892 at 336.089 kb on - strand, within Pf1N1B4_5892 at 336.089 kb on - strand, within Pf1N1B4_5892 at 336.139 kb on + strand, within Pf1N1B4_5892 at 336.252 kb on + strand at 336.252 kb on + strand at 336.279 kb on - strand at 337.015 kb on + strand, within Pf1N1B4_5893 at 337.016 kb on - strand, within Pf1N1B4_5893 at 337.078 kb on + strand, within Pf1N1B4_5893 at 337.079 kb on - strand at 337.079 kb on - strand, within Pf1N1B4_5893
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 335,177 + Pf1N1B4_5891 0.27 -0.3 335,299 + -0.8 335,682 - Pf1N1B4_5891 0.68 -0.3 335,779 + -0.2 335,928 + +0.8 335,928 + Pf1N1B4_5891 0.88 +0.5 335,929 - Pf1N1B4_5891 0.89 -0.6 335,929 - Pf1N1B4_5891 0.89 +0.1 335,929 - Pf1N1B4_5891 0.89 -2.0 335,932 + Pf1N1B4_5891 0.89 -1.1 335,932 + Pf1N1B4_5891 0.89 +0.6 336,004 + -0.0 336,004 + -0.2 336,004 + -0.8 336,004 + +1.0 336,005 - +0.5 336,088 + Pf1N1B4_5892 0.30 -0.8 336,088 + Pf1N1B4_5892 0.30 -0.8 336,088 + Pf1N1B4_5892 0.30 -0.2 336,088 + Pf1N1B4_5892 0.30 +0.2 336,088 + -0.2 336,088 + Pf1N1B4_5892 0.30 -0.6 336,088 + Pf1N1B4_5892 0.30 -0.7 336,089 - Pf1N1B4_5892 0.30 +0.2 336,089 - Pf1N1B4_5892 0.30 -0.7 336,089 - Pf1N1B4_5892 0.30 -0.8 336,089 - Pf1N1B4_5892 0.30 -0.5 336,139 + Pf1N1B4_5892 0.57 -1.5 336,252 + -0.7 336,252 + +0.8 336,279 - -0.2 337,015 + Pf1N1B4_5893 0.82 -0.6 337,016 - Pf1N1B4_5893 0.82 +0.2 337,078 + Pf1N1B4_5893 0.88 -0.6 337,079 - +0.8 337,079 - Pf1N1B4_5893 0.89 -0.8
Or see this region's nucleotide sequence