Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5695 and Pf1N1B4_5696 are separated by 160 nucleotides Pf1N1B4_5696 and Pf1N1B4_5697 are separated by 360 nucleotides Pf1N1B4_5697 and Pf1N1B4_5698 are separated by 773 nucleotides
Pf1N1B4_5695 - Aldehyde dehydrogenase A (EC 1.2.1.22), at 133,459 to 134,892
_5695
Pf1N1B4_5696 - hypothetical protein, at 135,053 to 135,181
_5696
Pf1N1B4_5697 - putative exported protein, at 135,542 to 136,108
_5697
Pf1N1B4_5698 - Putative monooxygenase, at 136,882 to 138,258
_5698
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1
2 at 134.699 kb on - strand, within Pf1N1B4_5695 at 134.758 kb on + strand at 134.857 kb on + strand at 134.858 kb on - strand at 134.878 kb on + strand at 134.959 kb on + strand at 134.959 kb on + strand at 134.959 kb on + strand at 134.959 kb on + strand at 134.959 kb on + strand at 134.959 kb on + strand at 134.960 kb on - strand at 134.960 kb on - strand at 134.960 kb on - strand at 134.988 kb on + strand at 134.989 kb on - strand at 134.989 kb on - strand at 134.989 kb on - strand at 134.990 kb on + strand at 135.451 kb on + strand at 135.471 kb on + strand at 135.472 kb on - strand at 135.472 kb on - strand at 135.525 kb on + strand at 135.526 kb on - strand at 135.526 kb on - strand at 135.615 kb on + strand, within Pf1N1B4_5697 at 135.615 kb on + strand at 135.616 kb on - strand, within Pf1N1B4_5697 at 135.684 kb on - strand, within Pf1N1B4_5697 at 135.809 kb on + strand, within Pf1N1B4_5697 at 135.812 kb on - strand, within Pf1N1B4_5697 at 135.812 kb on - strand, within Pf1N1B4_5697 at 135.812 kb on - strand, within Pf1N1B4_5697 at 135.812 kb on - strand, within Pf1N1B4_5697 at 135.812 kb on - strand, within Pf1N1B4_5697 at 135.812 kb on - strand, within Pf1N1B4_5697 at 136.073 kb on + strand at 136.074 kb on - strand at 136.076 kb on - strand at 136.305 kb on + strand at 136.305 kb on + strand at 136.306 kb on - strand at 136.332 kb on + strand at 136.332 kb on + strand at 136.332 kb on + strand at 136.335 kb on + strand at 136.335 kb on + strand at 136.336 kb on - strand at 136.336 kb on - strand at 136.336 kb on - strand at 136.339 kb on + strand at 136.339 kb on + strand at 136.340 kb on - strand at 136.340 kb on - strand at 136.416 kb on - strand at 136.553 kb on - strand at 136.553 kb on - strand at 136.580 kb on + strand at 136.581 kb on - strand at 136.581 kb on - strand at 136.581 kb on - strand at 136.603 kb on + strand at 136.604 kb on - strand at 136.604 kb on - strand at 136.607 kb on - strand at 136.607 kb on - strand at 136.688 kb on - strand at 136.715 kb on - strand at 136.741 kb on + strand at 136.805 kb on + strand at 136.806 kb on - strand at 136.806 kb on - strand at 136.806 kb on - strand at 136.831 kb on - strand at 137.009 kb on + strand at 137.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 134,699 - Pf1N1B4_5695 0.86 -0.9 134,758 + -0.4 134,857 + -1.2 134,858 - -0.2 134,878 + +2.5 134,959 + +0.5 134,959 + -0.2 134,959 + -0.6 134,959 + -0.0 134,959 + +2.4 134,959 + -0.7 134,960 - +0.4 134,960 - -2.0 134,960 - +0.4 134,988 + +1.2 134,989 - -1.1 134,989 - +0.8 134,989 - -0.3 134,990 + -0.2 135,451 + -0.8 135,471 + +0.8 135,472 - -0.3 135,472 - -0.5 135,525 + -1.0 135,526 - -0.8 135,526 - +0.2 135,615 + Pf1N1B4_5697 0.13 +1.2 135,615 + +0.2 135,616 - Pf1N1B4_5697 0.13 +0.4 135,684 - Pf1N1B4_5697 0.25 +1.0 135,809 + Pf1N1B4_5697 0.47 +0.3 135,812 - Pf1N1B4_5697 0.48 -0.0 135,812 - Pf1N1B4_5697 0.48 +1.2 135,812 - Pf1N1B4_5697 0.48 +0.8 135,812 - Pf1N1B4_5697 0.48 -0.0 135,812 - Pf1N1B4_5697 0.48 -0.9 135,812 - Pf1N1B4_5697 0.48 -0.2 136,073 + -0.3 136,074 - -0.2 136,076 - +0.4 136,305 + +1.2 136,305 + -1.5 136,306 - -0.8 136,332 + +1.5 136,332 + -0.5 136,332 + +0.4 136,335 + +0.4 136,335 + +0.8 136,336 - +0.5 136,336 - -0.6 136,336 - +0.4 136,339 + -0.5 136,339 + +2.4 136,340 - +0.8 136,340 - -1.5 136,416 - -0.5 136,553 - -0.6 136,553 - -1.0 136,580 + +1.4 136,581 - -0.1 136,581 - -0.2 136,581 - -0.2 136,603 + -0.2 136,604 - -1.7 136,604 - +0.5 136,607 - +0.2 136,607 - +0.3 136,688 - +0.1 136,715 - -0.4 136,741 + +1.3 136,805 + -2.7 136,806 - -0.3 136,806 - +0.2 136,806 - -0.7 136,831 - +0.3 137,009 + -0.5 137,010 - -0.5
Or see this region's nucleotide sequence