Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5595 and Pf1N1B4_5596 are separated by 406 nucleotides Pf1N1B4_5596 and Pf1N1B4_5597 are separated by 130 nucleotides
Pf1N1B4_5595 - Phenylacetic acid-specific porin; hydroxycinnamate specific porine, at 16,975 to 18,213
_5595
Pf1N1B4_5596 - Putative hydroxycinnamate transporter, at 18,620 to 19,837
_5596
Pf1N1B4_5597 - FIG005548: transport protein, at 19,968 to 21,125
_5597
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.627 kb on + strand at 17.733 kb on - strand, within Pf1N1B4_5595 at 18.129 kb on - strand at 18.131 kb on + strand at 18.131 kb on + strand at 18.132 kb on - strand at 18.301 kb on - strand at 18.301 kb on - strand at 18.301 kb on - strand at 18.899 kb on + strand, within Pf1N1B4_5596 at 19.037 kb on + strand, within Pf1N1B4_5596 at 19.037 kb on + strand, within Pf1N1B4_5596 at 19.037 kb on + strand, within Pf1N1B4_5596 at 19.037 kb on + strand, within Pf1N1B4_5596 at 19.037 kb on + strand, within Pf1N1B4_5596 at 19.286 kb on + strand, within Pf1N1B4_5596 at 19.286 kb on + strand, within Pf1N1B4_5596 at 19.310 kb on + strand, within Pf1N1B4_5596 at 19.310 kb on + strand at 19.310 kb on + strand, within Pf1N1B4_5596 at 19.311 kb on - strand, within Pf1N1B4_5596 at 19.311 kb on - strand, within Pf1N1B4_5596 at 19.311 kb on - strand, within Pf1N1B4_5596 at 19.475 kb on + strand, within Pf1N1B4_5596 at 19.475 kb on + strand, within Pf1N1B4_5596 at 20.190 kb on + strand, within Pf1N1B4_5597 at 20.190 kb on + strand, within Pf1N1B4_5597 at 20.282 kb on - strand, within Pf1N1B4_5597 at 20.451 kb on + strand at 20.471 kb on - strand, within Pf1N1B4_5597 at 20.648 kb on - strand, within Pf1N1B4_5597 at 20.648 kb on - strand, within Pf1N1B4_5597 at 20.746 kb on + strand, within Pf1N1B4_5597 at 20.747 kb on - strand, within Pf1N1B4_5597
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 17,627 + -0.2 17,733 - Pf1N1B4_5595 0.61 +0.2 18,129 - -0.6 18,131 + +0.3 18,131 + -0.4 18,132 - +0.5 18,301 - +1.4 18,301 - +2.0 18,301 - -0.7 18,899 + Pf1N1B4_5596 0.23 +2.4 19,037 + Pf1N1B4_5596 0.34 +0.2 19,037 + Pf1N1B4_5596 0.34 +0.5 19,037 + Pf1N1B4_5596 0.34 +0.2 19,037 + Pf1N1B4_5596 0.34 +1.8 19,037 + Pf1N1B4_5596 0.34 -0.4 19,286 + Pf1N1B4_5596 0.55 +1.3 19,286 + Pf1N1B4_5596 0.55 -0.6 19,310 + Pf1N1B4_5596 0.57 +0.6 19,310 + -0.8 19,310 + Pf1N1B4_5596 0.57 +0.5 19,311 - Pf1N1B4_5596 0.57 +0.5 19,311 - Pf1N1B4_5596 0.57 +0.8 19,311 - Pf1N1B4_5596 0.57 -0.1 19,475 + Pf1N1B4_5596 0.70 -0.2 19,475 + Pf1N1B4_5596 0.70 -0.0 20,190 + Pf1N1B4_5597 0.19 +1.8 20,190 + Pf1N1B4_5597 0.19 -2.5 20,282 - Pf1N1B4_5597 0.27 -0.3 20,451 + -2.2 20,471 - Pf1N1B4_5597 0.43 -0.2 20,648 - Pf1N1B4_5597 0.59 -0.4 20,648 - Pf1N1B4_5597 0.59 -0.0 20,746 + Pf1N1B4_5597 0.67 -0.3 20,747 - Pf1N1B4_5597 0.67 +0.1
Or see this region's nucleotide sequence