Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5485 and Pf1N1B4_5486 are separated by 57 nucleotides Pf1N1B4_5486 and Pf1N1B4_5487 are separated by 154 nucleotides Pf1N1B4_5487 and Pf1N1B4_5488 are separated by 383 nucleotides
Pf1N1B4_5485 - hypothetical protein, at 234,532 to 234,810
_5485
Pf1N1B4_5486 - hypothetical protein, at 234,868 to 235,053
_5486
Pf1N1B4_5487 - hypothetical protein, at 235,208 to 235,420
_5487
Pf1N1B4_5488 - hypothetical protein, at 235,804 to 236,031
_5488
Position (kb) 235
236 Strain fitness (log2 ratio) -2
-1
0
1
2 at 234.233 kb on + strand at 234.394 kb on + strand at 234.398 kb on - strand at 234.434 kb on + strand at 234.434 kb on + strand at 234.444 kb on + strand at 234.444 kb on + strand at 234.580 kb on + strand, within Pf1N1B4_5485 at 234.746 kb on + strand, within Pf1N1B4_5485 at 234.746 kb on + strand, within Pf1N1B4_5485 at 234.839 kb on + strand at 234.862 kb on - strand at 235.117 kb on - strand at 235.172 kb on + strand at 235.172 kb on + strand at 235.173 kb on - strand at 235.173 kb on - strand at 235.173 kb on - strand at 235.173 kb on - strand at 235.191 kb on + strand at 235.191 kb on + strand at 235.191 kb on + strand at 235.191 kb on + strand at 235.191 kb on + strand at 235.191 kb on + strand at 235.191 kb on + strand at 235.191 kb on + strand at 235.191 kb on + strand at 235.191 kb on + strand at 235.192 kb on - strand at 235.192 kb on - strand at 235.192 kb on - strand at 235.192 kb on - strand at 235.192 kb on - strand at 235.192 kb on - strand at 235.192 kb on - strand at 235.192 kb on - strand at 235.192 kb on - strand at 235.196 kb on - strand at 235.207 kb on + strand at 235.208 kb on - strand at 235.235 kb on + strand, within Pf1N1B4_5487 at 235.236 kb on - strand, within Pf1N1B4_5487 at 235.236 kb on - strand, within Pf1N1B4_5487 at 235.236 kb on - strand, within Pf1N1B4_5487 at 235.282 kb on - strand, within Pf1N1B4_5487 at 235.284 kb on + strand, within Pf1N1B4_5487 at 235.284 kb on + strand, within Pf1N1B4_5487 at 235.285 kb on - strand, within Pf1N1B4_5487 at 235.455 kb on + strand at 235.455 kb on + strand at 235.456 kb on - strand at 235.456 kb on - strand at 235.518 kb on + strand at 235.532 kb on + strand at 235.532 kb on + strand at 235.532 kb on + strand at 235.533 kb on - strand at 235.533 kb on - strand at 235.588 kb on + strand at 235.588 kb on + strand at 235.588 kb on + strand at 235.678 kb on + strand at 235.704 kb on + strand at 235.704 kb on + strand at 235.705 kb on - strand at 235.705 kb on - strand at 235.785 kb on - strand at 235.785 kb on - strand at 235.788 kb on + strand at 235.788 kb on + strand at 235.788 kb on + strand at 235.788 kb on + strand at 235.789 kb on - strand at 235.789 kb on - strand at 235.791 kb on + strand at 235.791 kb on + strand at 235.906 kb on + strand, within Pf1N1B4_5488 at 236.100 kb on + strand at 236.100 kb on + strand at 236.101 kb on - strand at 236.101 kb on - strand at 236.101 kb on - strand at 236.149 kb on + strand at 236.149 kb on + strand at 236.149 kb on + strand at 236.149 kb on + strand at 236.149 kb on + strand at 236.150 kb on - strand at 236.150 kb on - strand at 236.150 kb on - strand at 236.231 kb on + strand at 236.231 kb on + strand at 236.231 kb on + strand at 236.231 kb on + strand at 236.231 kb on + strand at 236.231 kb on + strand at 236.231 kb on + strand at 236.232 kb on - strand at 236.400 kb on + strand at 236.401 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 234,233 + -0.4 234,394 + +0.0 234,398 - +0.7 234,434 + +1.6 234,434 + +0.7 234,444 + +1.3 234,444 + +1.6 234,580 + Pf1N1B4_5485 0.17 +0.2 234,746 + Pf1N1B4_5485 0.77 -0.1 234,746 + Pf1N1B4_5485 0.77 -0.6 234,839 + -0.3 234,862 - +0.7 235,117 - +1.4 235,172 + +0.7 235,172 + +0.4 235,173 - +0.0 235,173 - -1.8 235,173 - +1.0 235,173 - -0.2 235,191 + +0.0 235,191 + -0.8 235,191 + -0.4 235,191 + +1.0 235,191 + +0.4 235,191 + -1.9 235,191 + +0.2 235,191 + +1.0 235,191 + +0.2 235,191 + +0.1 235,192 - -1.3 235,192 - +1.0 235,192 - +1.4 235,192 - -0.8 235,192 - -0.2 235,192 - -0.4 235,192 - -0.8 235,192 - +1.0 235,192 - -0.8 235,196 - +0.7 235,207 + -0.3 235,208 - +1.0 235,235 + Pf1N1B4_5487 0.13 -2.0 235,236 - Pf1N1B4_5487 0.13 -1.3 235,236 - Pf1N1B4_5487 0.13 +0.4 235,236 - Pf1N1B4_5487 0.13 -0.9 235,282 - Pf1N1B4_5487 0.35 -0.1 235,284 + Pf1N1B4_5487 0.36 -0.5 235,284 + Pf1N1B4_5487 0.36 -1.9 235,285 - Pf1N1B4_5487 0.36 +0.7 235,455 + +1.4 235,455 + -1.7 235,456 - -1.7 235,456 - -0.3 235,518 + -1.5 235,532 + -0.4 235,532 + +0.9 235,532 + +1.0 235,533 - +0.7 235,533 - -1.0 235,588 + -0.9 235,588 + +0.1 235,588 + -0.3 235,678 + +0.0 235,704 + -1.0 235,704 + +0.3 235,705 - +0.6 235,705 - +0.4 235,785 - +1.0 235,785 - +1.0 235,788 + +1.0 235,788 + +0.8 235,788 + -0.1 235,788 + -1.0 235,789 - +0.6 235,789 - +1.6 235,791 + +0.8 235,791 + -0.1 235,906 + Pf1N1B4_5488 0.45 -0.8 236,100 + +1.4 236,100 + -0.4 236,101 - -0.1 236,101 - -0.6 236,101 - +1.4 236,149 + -0.6 236,149 + -1.6 236,149 + -0.6 236,149 + -1.1 236,149 + -1.1 236,150 - +0.0 236,150 - +0.0 236,150 - -1.1 236,231 + +0.2 236,231 + -1.0 236,231 + +0.4 236,231 + -1.3 236,231 + +0.0 236,231 + +2.0 236,231 + +1.0 236,232 - +0.0 236,400 + +0.6 236,401 - +1.4
Or see this region's nucleotide sequence