Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_398

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_397 and Pf1N1B4_398 are separated by 196 nucleotidesPf1N1B4_398 and Pf1N1B4_399 are separated by 46 nucleotidesPf1N1B4_399 and Pf1N1B4_400 are separated by 19 nucleotides Pf1N1B4_397 - Hexuronate transporter, at 466,042 to 467,352 _397 Pf1N1B4_398 - Galactonate dehydratase (EC 4.2.1.6), at 467,549 to 468,697 _398 Pf1N1B4_399 - 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21), at 468,744 to 469,364 _399 Pf1N1B4_400 - 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58), at 469,384 to 470,376 _400 Position (kb) 467 468 469Strain fitness (log2 ratio) -2 -1 0 1 2at 466.601 kb on + strand, within Pf1N1B4_397at 466.601 kb on + strand, within Pf1N1B4_397at 466.602 kb on - strand, within Pf1N1B4_397at 466.659 kb on + strand, within Pf1N1B4_397at 466.660 kb on - strand, within Pf1N1B4_397at 466.904 kb on + strand, within Pf1N1B4_397at 466.904 kb on + strand, within Pf1N1B4_397at 466.904 kb on + strand, within Pf1N1B4_397at 466.904 kb on + strand, within Pf1N1B4_397at 466.905 kb on - strand, within Pf1N1B4_397at 466.905 kb on - strand, within Pf1N1B4_397at 466.974 kb on - strand, within Pf1N1B4_397at 467.085 kb on + strandat 467.087 kb on + strand, within Pf1N1B4_397at 467.087 kb on + strand, within Pf1N1B4_397at 467.088 kb on - strand, within Pf1N1B4_397at 467.252 kb on + strandat 467.252 kb on + strandat 467.252 kb on + strandat 467.252 kb on + strandat 467.253 kb on - strandat 467.368 kb on + strandat 467.368 kb on + strandat 467.368 kb on + strandat 467.368 kb on + strandat 467.368 kb on + strandat 467.368 kb on + strandat 467.369 kb on - strandat 467.369 kb on - strandat 467.369 kb on - strandat 467.369 kb on - strandat 467.369 kb on - strandat 467.369 kb on - strandat 467.369 kb on - strandat 467.374 kb on + strandat 467.374 kb on + strandat 467.375 kb on - strandat 467.375 kb on - strandat 467.631 kb on + strandat 467.631 kb on + strandat 467.632 kb on - strandat 467.632 kb on - strandat 467.632 kb on - strandat 467.722 kb on - strand, within Pf1N1B4_398at 467.748 kb on + strand, within Pf1N1B4_398at 467.748 kb on + strand, within Pf1N1B4_398at 467.748 kb on + strand, within Pf1N1B4_398at 467.748 kb on + strand, within Pf1N1B4_398at 467.749 kb on - strand, within Pf1N1B4_398at 467.749 kb on - strand, within Pf1N1B4_398at 467.865 kb on + strand, within Pf1N1B4_398at 467.866 kb on - strand, within Pf1N1B4_398at 467.866 kb on - strand, within Pf1N1B4_398at 467.946 kb on + strand, within Pf1N1B4_398at 467.946 kb on + strand, within Pf1N1B4_398at 467.946 kb on + strand, within Pf1N1B4_398at 467.947 kb on - strand, within Pf1N1B4_398at 468.091 kb on - strand, within Pf1N1B4_398at 468.130 kb on + strand, within Pf1N1B4_398at 468.348 kb on + strand, within Pf1N1B4_398at 468.349 kb on - strand, within Pf1N1B4_398at 468.349 kb on - strand, within Pf1N1B4_398at 468.480 kb on + strand, within Pf1N1B4_398at 468.480 kb on + strand, within Pf1N1B4_398at 468.480 kb on + strand, within Pf1N1B4_398at 468.495 kb on + strand, within Pf1N1B4_398at 468.546 kb on + strand, within Pf1N1B4_398at 468.547 kb on - strandat 468.547 kb on - strand, within Pf1N1B4_398at 468.699 kb on + strandat 468.700 kb on - strandat 468.700 kb on - strandat 468.700 kb on - strandat 468.700 kb on - strandat 468.712 kb on - strandat 468.712 kb on - strandat 468.712 kb on - strandat 468.712 kb on - strandat 468.712 kb on - strandat 468.714 kb on + strandat 468.714 kb on + strandat 468.715 kb on - strandat 468.715 kb on - strandat 468.715 kb on - strandat 468.715 kb on - strandat 468.715 kb on - strandat 468.715 kb on - strandat 468.715 kb on - strandat 468.715 kb on - strandat 468.772 kb on + strandat 468.772 kb on + strandat 468.772 kb on + strandat 468.772 kb on + strandat 468.773 kb on - strandat 468.773 kb on - strandat 468.773 kb on - strandat 468.773 kb on - strandat 469.196 kb on + strand, within Pf1N1B4_399at 469.197 kb on - strand, within Pf1N1B4_399at 469.214 kb on + strand, within Pf1N1B4_399at 469.222 kb on + strand, within Pf1N1B4_399at 469.223 kb on - strand, within Pf1N1B4_399at 469.239 kb on - strand, within Pf1N1B4_399at 469.274 kb on - strand, within Pf1N1B4_399at 469.629 kb on - strand, within Pf1N1B4_400

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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466,601 + Pf1N1B4_397 0.43 -0.3
466,601 + Pf1N1B4_397 0.43 -0.3
466,602 - Pf1N1B4_397 0.43 -0.2
466,659 + Pf1N1B4_397 0.47 +0.8
466,660 - Pf1N1B4_397 0.47 -0.7
466,904 + Pf1N1B4_397 0.66 -0.5
466,904 + Pf1N1B4_397 0.66 -2.0
466,904 + Pf1N1B4_397 0.66 -0.7
466,904 + Pf1N1B4_397 0.66 -0.1
466,905 - Pf1N1B4_397 0.66 -0.4
466,905 - Pf1N1B4_397 0.66 -0.2
466,974 - Pf1N1B4_397 0.71 +2.0
467,085 + +0.6
467,087 + Pf1N1B4_397 0.80 -0.2
467,087 + Pf1N1B4_397 0.80 -1.0
467,088 - Pf1N1B4_397 0.80 -0.2
467,252 + -0.5
467,252 + -0.5
467,252 + +0.0
467,252 + +0.0
467,253 - -1.7
467,368 + -0.3
467,368 + +0.2
467,368 + -0.5
467,368 + -1.0
467,368 + +0.5
467,368 + +0.3
467,369 - -2.0
467,369 - -0.7
467,369 - +0.6
467,369 - +0.6
467,369 - +0.0
467,369 - +0.0
467,369 - -1.9
467,374 + -1.8
467,374 + +0.5
467,375 - -0.5
467,375 - -0.3
467,631 + -1.0
467,631 + +1.0
467,632 - +0.0
467,632 - -0.8
467,632 - +0.6
467,722 - Pf1N1B4_398 0.15 +1.8
467,748 + Pf1N1B4_398 0.17 +0.9
467,748 + Pf1N1B4_398 0.17 -0.3
467,748 + Pf1N1B4_398 0.17 -0.4
467,748 + Pf1N1B4_398 0.17 -0.2
467,749 - Pf1N1B4_398 0.17 +1.0
467,749 - Pf1N1B4_398 0.17 +0.6
467,865 + Pf1N1B4_398 0.28 +1.8
467,866 - Pf1N1B4_398 0.28 +1.2
467,866 - Pf1N1B4_398 0.28 -1.3
467,946 + Pf1N1B4_398 0.35 +0.6
467,946 + Pf1N1B4_398 0.35 -0.1
467,946 + Pf1N1B4_398 0.35 +1.5
467,947 - Pf1N1B4_398 0.35 -0.0
468,091 - Pf1N1B4_398 0.47 -0.5
468,130 + Pf1N1B4_398 0.51 +1.0
468,348 + Pf1N1B4_398 0.70 +1.0
468,349 - Pf1N1B4_398 0.70 +1.0
468,349 - Pf1N1B4_398 0.70 -0.3
468,480 + Pf1N1B4_398 0.81 -0.9
468,480 + Pf1N1B4_398 0.81 +0.0
468,480 + Pf1N1B4_398 0.81 -1.0
468,495 + Pf1N1B4_398 0.82 -1.0
468,546 + Pf1N1B4_398 0.87 +1.3
468,547 - +0.0
468,547 - Pf1N1B4_398 0.87 +1.6
468,699 + +2.0
468,700 - -1.0
468,700 - +0.2
468,700 - -0.4
468,700 - +0.9
468,712 - -1.1
468,712 - +0.0
468,712 - -1.0
468,712 - -1.2
468,712 - +0.2
468,714 + +0.3
468,714 + +0.3
468,715 - +0.6
468,715 - +1.0
468,715 - -0.8
468,715 - +0.2
468,715 - +1.5
468,715 - -0.5
468,715 - -0.1
468,715 - +0.7
468,772 + -1.2
468,772 + +1.5
468,772 + +0.0
468,772 + +1.2
468,773 - +0.0
468,773 - -1.4
468,773 - +0.3
468,773 - -1.5
469,196 + Pf1N1B4_399 0.73 +0.7
469,197 - Pf1N1B4_399 0.73 -1.8
469,214 + Pf1N1B4_399 0.76 +0.0
469,222 + Pf1N1B4_399 0.77 +0.2
469,223 - Pf1N1B4_399 0.77 +1.0
469,239 - Pf1N1B4_399 0.80 +0.0
469,274 - Pf1N1B4_399 0.85 -0.4
469,629 - Pf1N1B4_400 0.25 -0.3

Or see this region's nucleotide sequence