Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2365

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2363 and Pf1N1B4_2364 overlap by 8 nucleotidesPf1N1B4_2364 and Pf1N1B4_2365 overlap by 4 nucleotidesPf1N1B4_2365 and Pf1N1B4_2366 overlap by 4 nucleotidesPf1N1B4_2366 and Pf1N1B4_2367 overlap by 4 nucleotides Pf1N1B4_2363 - Malonate decarboxylase delta subunit, at 2,681,086 to 2,681,385 _2363 Pf1N1B4_2364 - Malonate decarboxylase beta subunit, at 2,681,378 to 2,682,229 _2364 Pf1N1B4_2365 - Malonate decarboxylase gamma subunit, at 2,682,226 to 2,683,029 _2365 Pf1N1B4_2366 - Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-), at 2,683,026 to 2,683,643 _2366 Pf1N1B4_2367 - Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39), at 2,683,640 to 2,684,551 _2367 Position (kb) 2682 2683 2684Strain fitness (log2 ratio) -2 -1 0 1 2at 2681.410 kb on + strandat 2681.410 kb on + strandat 2681.410 kb on + strandat 2681.410 kb on + strandat 2681.410 kb on + strandat 2681.411 kb on - strandat 2681.411 kb on - strandat 2681.411 kb on - strandat 2681.411 kb on - strandat 2681.411 kb on - strandat 2681.411 kb on - strandat 2681.411 kb on - strandat 2681.411 kb on - strandat 2681.891 kb on + strand, within Pf1N1B4_2364at 2681.891 kb on + strand, within Pf1N1B4_2364at 2681.891 kb on + strand, within Pf1N1B4_2364at 2681.892 kb on - strand, within Pf1N1B4_2364at 2681.892 kb on - strand, within Pf1N1B4_2364at 2681.969 kb on + strand, within Pf1N1B4_2364at 2681.969 kb on + strand, within Pf1N1B4_2364at 2681.970 kb on - strand, within Pf1N1B4_2364at 2681.970 kb on - strand, within Pf1N1B4_2364at 2682.047 kb on + strand, within Pf1N1B4_2364at 2682.047 kb on + strand, within Pf1N1B4_2364at 2682.235 kb on + strandat 2682.235 kb on + strandat 2682.235 kb on + strandat 2682.329 kb on + strand, within Pf1N1B4_2365at 2682.355 kb on - strand, within Pf1N1B4_2365at 2682.526 kb on + strand, within Pf1N1B4_2365at 2682.527 kb on - strand, within Pf1N1B4_2365at 2682.586 kb on + strand, within Pf1N1B4_2365at 2682.586 kb on + strand, within Pf1N1B4_2365at 2682.586 kb on + strand, within Pf1N1B4_2365at 2682.586 kb on + strand, within Pf1N1B4_2365at 2682.586 kb on + strand, within Pf1N1B4_2365at 2682.587 kb on - strand, within Pf1N1B4_2365at 2682.587 kb on - strand, within Pf1N1B4_2365at 2682.587 kb on - strand, within Pf1N1B4_2365at 2682.587 kb on - strand, within Pf1N1B4_2365at 2682.808 kb on + strand, within Pf1N1B4_2365at 2682.808 kb on + strand, within Pf1N1B4_2365at 2682.808 kb on + strand, within Pf1N1B4_2365at 2682.809 kb on - strand, within Pf1N1B4_2365at 2683.246 kb on + strand, within Pf1N1B4_2366at 2683.246 kb on + strand, within Pf1N1B4_2366at 2683.527 kb on + strand, within Pf1N1B4_2366at 2683.537 kb on + strand, within Pf1N1B4_2366at 2683.537 kb on + strand, within Pf1N1B4_2366at 2683.537 kb on + strand, within Pf1N1B4_2366at 2683.538 kb on - strand, within Pf1N1B4_2366at 2683.538 kb on - strand, within Pf1N1B4_2366at 2683.538 kb on - strand, within Pf1N1B4_2366at 2683.538 kb on - strand, within Pf1N1B4_2366at 2683.800 kb on + strand, within Pf1N1B4_2367at 2683.800 kb on + strand, within Pf1N1B4_2367at 2683.800 kb on + strand, within Pf1N1B4_2367at 2683.800 kb on + strandat 2683.801 kb on - strand, within Pf1N1B4_2367at 2683.856 kb on + strand, within Pf1N1B4_2367at 2683.857 kb on - strand, within Pf1N1B4_2367at 2683.982 kb on + strand, within Pf1N1B4_2367at 2683.982 kb on + strand, within Pf1N1B4_2367at 2683.983 kb on - strand, within Pf1N1B4_2367

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,681,410 + -0.0
2,681,410 + +0.4
2,681,410 + +1.5
2,681,410 + -1.5
2,681,410 + +0.4
2,681,411 - +1.3
2,681,411 - -0.5
2,681,411 - -1.3
2,681,411 - +0.3
2,681,411 - -0.7
2,681,411 - +0.2
2,681,411 - +0.3
2,681,411 - +1.1
2,681,891 + Pf1N1B4_2364 0.60 -0.0
2,681,891 + Pf1N1B4_2364 0.60 +2.1
2,681,891 + Pf1N1B4_2364 0.60 +0.3
2,681,892 - Pf1N1B4_2364 0.60 +1.0
2,681,892 - Pf1N1B4_2364 0.60 -1.0
2,681,969 + Pf1N1B4_2364 0.69 -0.2
2,681,969 + Pf1N1B4_2364 0.69 +1.4
2,681,970 - Pf1N1B4_2364 0.69 -0.5
2,681,970 - Pf1N1B4_2364 0.69 +0.9
2,682,047 + Pf1N1B4_2364 0.79 +0.2
2,682,047 + Pf1N1B4_2364 0.79 -0.0
2,682,235 + -0.5
2,682,235 + -0.6
2,682,235 + -0.3
2,682,329 + Pf1N1B4_2365 0.13 -0.0
2,682,355 - Pf1N1B4_2365 0.16 +0.7
2,682,526 + Pf1N1B4_2365 0.37 +1.5
2,682,527 - Pf1N1B4_2365 0.37 +1.5
2,682,586 + Pf1N1B4_2365 0.45 +0.0
2,682,586 + Pf1N1B4_2365 0.45 -0.6
2,682,586 + Pf1N1B4_2365 0.45 +0.5
2,682,586 + Pf1N1B4_2365 0.45 +1.1
2,682,586 + Pf1N1B4_2365 0.45 -0.1
2,682,587 - Pf1N1B4_2365 0.45 -0.5
2,682,587 - Pf1N1B4_2365 0.45 +0.5
2,682,587 - Pf1N1B4_2365 0.45 +0.8
2,682,587 - Pf1N1B4_2365 0.45 -0.5
2,682,808 + Pf1N1B4_2365 0.72 -0.1
2,682,808 + Pf1N1B4_2365 0.72 +1.2
2,682,808 + Pf1N1B4_2365 0.72 +0.9
2,682,809 - Pf1N1B4_2365 0.73 -1.4
2,683,246 + Pf1N1B4_2366 0.36 +0.2
2,683,246 + Pf1N1B4_2366 0.36 -0.9
2,683,527 + Pf1N1B4_2366 0.81 +0.8
2,683,537 + Pf1N1B4_2366 0.83 +0.5
2,683,537 + Pf1N1B4_2366 0.83 +1.9
2,683,537 + Pf1N1B4_2366 0.83 +0.6
2,683,538 - Pf1N1B4_2366 0.83 -0.5
2,683,538 - Pf1N1B4_2366 0.83 +1.0
2,683,538 - Pf1N1B4_2366 0.83 -0.7
2,683,538 - Pf1N1B4_2366 0.83 -1.3
2,683,800 + Pf1N1B4_2367 0.18 +0.2
2,683,800 + Pf1N1B4_2367 0.18 -1.9
2,683,800 + Pf1N1B4_2367 0.18 +0.1
2,683,800 + +2.5
2,683,801 - Pf1N1B4_2367 0.18 +2.5
2,683,856 + Pf1N1B4_2367 0.24 -0.9
2,683,857 - Pf1N1B4_2367 0.24 +0.5
2,683,982 + Pf1N1B4_2367 0.38 +2.0
2,683,982 + Pf1N1B4_2367 0.38 -1.3
2,683,983 - Pf1N1B4_2367 0.38 -0.0

Or see this region's nucleotide sequence