Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02680 and LRK54_RS02685 overlap by 17 nucleotides LRK54_RS02685 and LRK54_RS02690 overlap by 4 nucleotides LRK54_RS02690 and LRK54_RS02695 are separated by 21 nucleotides LRK54_RS02695 and LRK54_RS02700 are separated by 14 nucleotides LRK54_RS02700 and LRK54_RS02705 are separated by 106 nucleotides
LRK54_RS02680: LRK54_RS02680 - CPBP family intramembrane metalloprotease, at 576,317 to 577,144
_RS02680
LRK54_RS02685: LRK54_RS02685 - Maf family nucleotide pyrophosphatase, at 577,128 to 577,715
_RS02685
LRK54_RS02690: LRK54_RS02690 - GNAT family N-acetyltransferase, at 577,712 to 578,161
_RS02690
LRK54_RS02695: LRK54_RS02695 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 578,183 to 578,653
_RS02695
LRK54_RS02700: LRK54_RS02700 - ribosome silencing factor, at 578,668 to 579,054
_RS02700
LRK54_RS02705: LRK54_RS02705 - nitronate monooxygenase, at 579,161 to 580,228
_RS02705
Position (kb) 577
578
579 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.987 kb on - strand, within LRK54_RS02680 at 576.987 kb on - strand, within LRK54_RS02680 at 576.987 kb on - strand, within LRK54_RS02680 at 576.987 kb on - strand, within LRK54_RS02680 at 576.987 kb on - strand, within LRK54_RS02680 at 576.987 kb on - strand, within LRK54_RS02680 at 576.995 kb on + strand, within LRK54_RS02680 at 576.995 kb on + strand, within LRK54_RS02680 at 576.995 kb on + strand, within LRK54_RS02680 at 576.996 kb on - strand, within LRK54_RS02680 at 576.996 kb on - strand, within LRK54_RS02680 at 576.996 kb on - strand, within LRK54_RS02680 at 576.996 kb on - strand, within LRK54_RS02680 at 576.996 kb on - strand, within LRK54_RS02680 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.255 kb on + strand, within LRK54_RS02685 at 577.255 kb on + strand, within LRK54_RS02685 at 577.255 kb on + strand, within LRK54_RS02685 at 577.255 kb on + strand, within LRK54_RS02685 at 577.255 kb on + strand, within LRK54_RS02685 at 577.256 kb on - strand, within LRK54_RS02685 at 577.256 kb on - strand, within LRK54_RS02685 at 577.256 kb on - strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.582 kb on + strand, within LRK54_RS02685 at 577.582 kb on + strand, within LRK54_RS02685 at 577.582 kb on + strand, within LRK54_RS02685 at 577.582 kb on + strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.699 kb on + strand at 577.699 kb on + strand at 577.699 kb on + strand at 577.699 kb on + strand at 577.699 kb on + strand at 577.699 kb on + strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.728 kb on + strand at 577.728 kb on + strand at 577.728 kb on + strand at 577.729 kb on - strand at 577.729 kb on - strand at 577.729 kb on - strand at 577.729 kb on - strand at 577.729 kb on - strand at 577.743 kb on + strand at 577.744 kb on - strand at 577.744 kb on - strand at 577.744 kb on - strand at 577.744 kb on - strand at 577.744 kb on - strand at 577.770 kb on + strand, within LRK54_RS02690 at 577.770 kb on + strand, within LRK54_RS02690 at 577.770 kb on + strand, within LRK54_RS02690 at 577.770 kb on + strand, within LRK54_RS02690 at 577.771 kb on - strand, within LRK54_RS02690 at 577.771 kb on - strand, within LRK54_RS02690 at 577.771 kb on - strand, within LRK54_RS02690 at 577.771 kb on - strand, within LRK54_RS02690 at 577.771 kb on - strand, within LRK54_RS02690 at 577.959 kb on + strand, within LRK54_RS02690 at 577.959 kb on + strand, within LRK54_RS02690 at 577.959 kb on + strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 578.082 kb on + strand, within LRK54_RS02690 at 578.082 kb on + strand, within LRK54_RS02690 at 578.082 kb on + strand, within LRK54_RS02690 at 578.082 kb on + strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.196 kb on + strand at 578.196 kb on + strand at 578.196 kb on + strand at 578.196 kb on + strand at 578.196 kb on + strand at 578.196 kb on + strand at 578.197 kb on - strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.586 kb on + strand, within LRK54_RS02695 at 578.735 kb on + strand, within LRK54_RS02700 at 578.735 kb on + strand, within LRK54_RS02700 at 578.735 kb on + strand, within LRK54_RS02700 at 578.735 kb on + strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 579.016 kb on - strand at 579.039 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.106 kb on + strand at 579.106 kb on + strand at 579.106 kb on + strand at 579.106 kb on + strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 576,986 + LRK54_RS02680 0.81 -0.2 576,986 + LRK54_RS02680 0.81 +0.3 576,986 + LRK54_RS02680 0.81 -1.9 576,986 + LRK54_RS02680 0.81 -1.1 576,986 + LRK54_RS02680 0.81 +0.6 576,986 + LRK54_RS02680 0.81 +0.4 576,986 + LRK54_RS02680 0.81 -1.7 576,986 + LRK54_RS02680 0.81 -0.2 576,986 + LRK54_RS02680 0.81 -0.4 576,986 + LRK54_RS02680 0.81 -1.4 576,986 + LRK54_RS02680 0.81 -1.3 576,986 + LRK54_RS02680 0.81 -2.3 576,987 - LRK54_RS02680 0.81 -1.5 576,987 - LRK54_RS02680 0.81 +0.2 576,987 - LRK54_RS02680 0.81 -0.6 576,987 - LRK54_RS02680 0.81 -1.4 576,987 - LRK54_RS02680 0.81 -0.4 576,987 - LRK54_RS02680 0.81 -1.1 576,995 + LRK54_RS02680 0.82 -1.3 576,995 + LRK54_RS02680 0.82 -1.6 576,995 + LRK54_RS02680 0.82 -2.2 576,996 - LRK54_RS02680 0.82 -0.2 576,996 - LRK54_RS02680 0.82 +0.3 576,996 - LRK54_RS02680 0.82 -0.7 576,996 - LRK54_RS02680 0.82 +3.0 576,996 - LRK54_RS02680 0.82 +0.2 577,204 + LRK54_RS02685 0.13 -0.9 577,204 + LRK54_RS02685 0.13 -0.5 577,204 + LRK54_RS02685 0.13 +0.4 577,204 + LRK54_RS02685 0.13 -0.5 577,204 + LRK54_RS02685 0.13 +0.0 577,204 + LRK54_RS02685 0.13 -0.4 577,204 + LRK54_RS02685 0.13 +1.3 577,204 + LRK54_RS02685 0.13 +0.1 577,204 + LRK54_RS02685 0.13 -1.3 577,204 + LRK54_RS02685 0.13 +0.2 577,204 + LRK54_RS02685 0.13 +1.7 577,204 + LRK54_RS02685 0.13 -0.8 577,204 + LRK54_RS02685 0.13 +0.8 577,205 - LRK54_RS02685 0.13 -0.4 577,205 - LRK54_RS02685 0.13 -0.4 577,205 - LRK54_RS02685 0.13 -1.0 577,205 - LRK54_RS02685 0.13 +0.0 577,205 - LRK54_RS02685 0.13 +0.2 577,205 - LRK54_RS02685 0.13 -0.0 577,205 - LRK54_RS02685 0.13 -0.4 577,205 - LRK54_RS02685 0.13 -0.6 577,205 - LRK54_RS02685 0.13 +0.7 577,205 - LRK54_RS02685 0.13 -0.7 577,205 - LRK54_RS02685 0.13 +1.0 577,205 - LRK54_RS02685 0.13 -0.2 577,205 - LRK54_RS02685 0.13 +1.5 577,205 - LRK54_RS02685 0.13 +0.3 577,205 - LRK54_RS02685 0.13 +0.3 577,205 - LRK54_RS02685 0.13 -0.1 577,205 - LRK54_RS02685 0.13 -1.1 577,205 - LRK54_RS02685 0.13 +0.2 577,205 - LRK54_RS02685 0.13 +0.1 577,255 + LRK54_RS02685 0.22 +0.0 577,255 + LRK54_RS02685 0.22 +0.6 577,255 + LRK54_RS02685 0.22 -0.5 577,255 + LRK54_RS02685 0.22 +0.9 577,255 + LRK54_RS02685 0.22 +0.6 577,256 - LRK54_RS02685 0.22 -0.3 577,256 - LRK54_RS02685 0.22 -0.7 577,256 - LRK54_RS02685 0.22 -0.7 577,294 + LRK54_RS02685 0.28 -0.0 577,294 + LRK54_RS02685 0.28 +1.9 577,294 + LRK54_RS02685 0.28 -0.4 577,294 + LRK54_RS02685 0.28 +0.2 577,294 + LRK54_RS02685 0.28 -0.3 577,294 + LRK54_RS02685 0.28 -0.4 577,294 + LRK54_RS02685 0.28 -0.5 577,294 + LRK54_RS02685 0.28 -0.7 577,294 + LRK54_RS02685 0.28 -0.6 577,294 + LRK54_RS02685 0.28 +1.8 577,294 + LRK54_RS02685 0.28 -1.6 577,295 - LRK54_RS02685 0.28 -0.1 577,295 - LRK54_RS02685 0.28 -0.5 577,295 - LRK54_RS02685 0.28 +0.2 577,295 - LRK54_RS02685 0.28 +1.8 577,295 - LRK54_RS02685 0.28 -0.7 577,295 - LRK54_RS02685 0.28 -0.1 577,295 - LRK54_RS02685 0.28 -1.5 577,295 - LRK54_RS02685 0.28 -0.2 577,295 - LRK54_RS02685 0.28 -0.1 577,295 - LRK54_RS02685 0.28 -0.5 577,295 - LRK54_RS02685 0.28 -0.5 577,582 + LRK54_RS02685 0.77 -0.2 577,582 + LRK54_RS02685 0.77 +0.6 577,582 + LRK54_RS02685 0.77 +0.4 577,582 + LRK54_RS02685 0.77 -0.7 577,583 - LRK54_RS02685 0.77 -0.7 577,583 - LRK54_RS02685 0.77 +0.4 577,583 - LRK54_RS02685 0.77 +0.4 577,583 - LRK54_RS02685 0.77 -0.8 577,583 - LRK54_RS02685 0.77 -0.3 577,583 - LRK54_RS02685 0.77 +0.0 577,583 - LRK54_RS02685 0.77 +0.5 577,583 - LRK54_RS02685 0.77 -0.8 577,583 - LRK54_RS02685 0.77 +0.7 577,699 + -0.2 577,699 + +0.3 577,699 + -0.5 577,699 + -0.7 577,699 + -0.1 577,699 + -0.6 577,700 - +0.1 577,700 - -0.2 577,700 - -1.4 577,700 - -0.0 577,700 - +0.0 577,700 - -0.2 577,700 - +0.2 577,700 - -1.2 577,728 + -0.8 577,728 + +0.1 577,728 + +0.4 577,729 - +0.7 577,729 - +0.1 577,729 - -0.4 577,729 - -0.9 577,729 - +0.5 577,743 + -0.2 577,744 - -0.2 577,744 - -0.4 577,744 - +0.5 577,744 - +0.1 577,744 - -0.1 577,770 + LRK54_RS02690 0.13 +1.1 577,770 + LRK54_RS02690 0.13 +0.1 577,770 + LRK54_RS02690 0.13 -1.2 577,770 + LRK54_RS02690 0.13 +0.4 577,771 - LRK54_RS02690 0.13 -0.4 577,771 - LRK54_RS02690 0.13 -0.6 577,771 - LRK54_RS02690 0.13 +0.2 577,771 - LRK54_RS02690 0.13 -0.7 577,771 - LRK54_RS02690 0.13 -1.7 577,959 + LRK54_RS02690 0.55 +0.6 577,959 + LRK54_RS02690 0.55 -0.1 577,959 + LRK54_RS02690 0.55 -0.2 577,960 - LRK54_RS02690 0.55 +1.9 577,960 - LRK54_RS02690 0.55 +3.0 577,960 - LRK54_RS02690 0.55 +0.4 577,960 - LRK54_RS02690 0.55 +0.1 577,960 - LRK54_RS02690 0.55 -0.7 577,960 - LRK54_RS02690 0.55 +0.6 578,082 + LRK54_RS02690 0.82 -0.2 578,082 + LRK54_RS02690 0.82 -0.3 578,082 + LRK54_RS02690 0.82 +0.5 578,082 + LRK54_RS02690 0.82 +0.1 578,083 - LRK54_RS02690 0.82 +0.8 578,083 - LRK54_RS02690 0.82 +0.4 578,083 - LRK54_RS02690 0.82 +0.1 578,083 - LRK54_RS02690 0.82 +0.5 578,083 - LRK54_RS02690 0.82 +0.1 578,083 - LRK54_RS02690 0.82 +1.8 578,196 + +0.1 578,196 + -0.2 578,196 + +1.6 578,196 + -0.4 578,196 + -0.3 578,196 + +2.3 578,197 - +0.4 578,229 + +1.0 578,229 + +0.4 578,229 + -1.5 578,229 + -0.3 578,229 + +1.0 578,229 + +1.1 578,230 - LRK54_RS02695 0.10 -1.8 578,230 - LRK54_RS02695 0.10 -1.4 578,230 - LRK54_RS02695 0.10 +0.6 578,230 - LRK54_RS02695 0.10 -1.2 578,230 - LRK54_RS02695 0.10 +0.5 578,230 - LRK54_RS02695 0.10 +0.8 578,230 - LRK54_RS02695 0.10 +1.2 578,586 + LRK54_RS02695 0.86 -0.0 578,735 + LRK54_RS02700 0.17 -0.2 578,735 + LRK54_RS02700 0.17 -0.2 578,735 + LRK54_RS02700 0.17 +0.3 578,735 + LRK54_RS02700 0.17 -0.2 578,736 - LRK54_RS02700 0.18 -1.0 578,736 - LRK54_RS02700 0.18 +0.5 578,736 - LRK54_RS02700 0.18 +0.1 578,736 - LRK54_RS02700 0.18 -0.6 578,736 - LRK54_RS02700 0.18 -0.6 578,736 - LRK54_RS02700 0.18 +0.4 578,736 - LRK54_RS02700 0.18 -0.6 578,736 - LRK54_RS02700 0.18 +0.1 578,736 - LRK54_RS02700 0.18 -0.6 578,736 - LRK54_RS02700 0.18 -0.2 578,736 - LRK54_RS02700 0.18 +0.1 579,016 - -1.0 579,039 + -0.5 579,104 + -0.2 579,104 + -1.7 579,104 + -0.5 579,104 + +0.4 579,104 + -0.1 579,104 + -0.0 579,104 + -0.4 579,104 + +0.3 579,104 + +1.0 579,104 + -0.7 579,104 + +0.5 579,104 + +0.6 579,104 + +0.1 579,104 + +0.8 579,104 + +0.1 579,104 + -0.0 579,104 + -0.1 579,104 + -0.5 579,105 - +0.2 579,105 - -0.3 579,105 - -0.1 579,105 - +1.2 579,105 - +0.9 579,105 - +0.5 579,105 - -0.4 579,105 - +0.3 579,105 - -0.1 579,105 - +0.2 579,105 - -0.1 579,105 - -0.4 579,105 - -0.2 579,105 - +1.4 579,106 + +0.8 579,106 + -0.1 579,106 + -1.6 579,106 + -0.1 579,107 - -0.2 579,107 - -1.0 579,107 - -0.8 579,107 - -0.0 579,107 - -1.3 579,107 - -0.7 579,107 - +2.3
Or see this region's nucleotide sequence