Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08875

Experiment: Arabinan from sugar beet 5mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinan from sugar beet 5mg/ml (C)
1,008,919	+				-1.6
1,009,010	+				-0.5
1,009,036	-				+0.1
1,009,037	+				-0.9
1,009,045	+				-0.1
1,009,186	-		HMPREF1058_RS08875	0.18	-0.4
1,009,445	-		HMPREF1058_RS08875	0.50	-5.7
1,009,455	+		HMPREF1058_RS08875	0.51	-4.0
1,009,455	+		HMPREF1058_RS08875	0.51	-3.9
1,009,455	+		HMPREF1058_RS08875	0.51	-3.3
1,009,455	+		HMPREF1058_RS08875	0.51	-7.0
1,009,456	-		HMPREF1058_RS08875	0.51	-3.6
1,009,469	-		HMPREF1058_RS08875	0.52	-4.4
1,009,538	-		HMPREF1058_RS08875	0.61	-2.5
1,009,538	-		HMPREF1058_RS08875	0.61	-2.3
1,009,560	-		HMPREF1058_RS08875	0.64	-7.0
1,009,613	+		HMPREF1058_RS08875	0.70	-3.3
1,009,717	-		HMPREF1058_RS08875	0.83	-7.9
1,009,720	+		HMPREF1058_RS08875	0.83	-5.9
1,009,742	+		HMPREF1058_RS08875	0.86	-3.5
1,009,743	-		HMPREF1058_RS08875	0.86	-1.4
1,009,745	+		HMPREF1058_RS08875	0.87	-3.6
1,009,801	-				-4.1
1,009,806	-				-4.9
1,009,806	-				-1.7
1,009,915	+				-2.4
1,009,916	-				+0.9
1,009,916	-				-1.0
1,009,926	+				-6.1
1,009,927	-				-0.3
1,009,927	-				+0.5
1,009,929	-				-0.7
1,009,971	+				-0.8
1,010,005	-				-1.5
1,010,036	-				-0.2
1,010,051	-		HMPREF1058_RS08870	0.11	-0.8
1,010,083	+		HMPREF1058_RS08870	0.14	-0.7
1,010,085	+		HMPREF1058_RS08870	0.14	-0.9
1,010,086	-		HMPREF1058_RS08870	0.14	-0.1
1,010,107	+		HMPREF1058_RS08870	0.16	+0.1
1,010,160	+		HMPREF1058_RS08870	0.22	-0.5
1,010,162	+		HMPREF1058_RS08870	0.22	-0.7
1,010,162	+		HMPREF1058_RS08870	0.22	-1.0
1,010,162	+		HMPREF1058_RS08870	0.22	-0.8
1,010,170	+		HMPREF1058_RS08870	0.23	+0.9
1,010,199	+		HMPREF1058_RS08870	0.25	+0.0
1,010,390	-		HMPREF1058_RS08870	0.44	-0.8
1,010,522	-		HMPREF1058_RS08870	0.57	-0.4
1,010,548	-		HMPREF1058_RS08870	0.60	-0.4
1,010,552	-		HMPREF1058_RS08870	0.60	-0.0
1,010,552	-		HMPREF1058_RS08870	0.60	-0.6
1,010,552	-		HMPREF1058_RS08870	0.60	-0.3
1,010,568	+		HMPREF1058_RS08870	0.62	+1.1
1,010,652	+		HMPREF1058_RS08870	0.70	-1.1
1,010,720	-		HMPREF1058_RS08870	0.77	-0.4
1,010,722	+		HMPREF1058_RS08870	0.77	+0.1
1,010,723	-		HMPREF1058_RS08870	0.77	+0.1
1,010,724	+		HMPREF1058_RS08870	0.77	-0.4
1,010,725	-		HMPREF1058_RS08870	0.77	+0.3
1,010,725	-		HMPREF1058_RS08870	0.77	-0.4
1,010,725	-		HMPREF1058_RS08870	0.77	-0.2
1,010,729	+		HMPREF1058_RS08870	0.77	-0.6
1,010,729	+		HMPREF1058_RS08870	0.77	+0.2
1,010,797	+		HMPREF1058_RS08870	0.84	-0.5
1,010,798	-		HMPREF1058_RS08870	0.84	-1.0
1,010,798	-		HMPREF1058_RS08870	0.84	+0.3
1,010,836	+		HMPREF1058_RS08870	0.88	-0.4
1,010,845	+		HMPREF1058_RS08870	0.89	-0.4
1,010,845	+		HMPREF1058_RS08870	0.89	-0.4