Experiment: Arabinan from sugar beet 5mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06770 and HMPREF1058_RS06765 are separated by 11 nucleotides HMPREF1058_RS06765 and HMPREF1058_RS06760 overlap by 4 nucleotides
HMPREF1058_RS06770: HMPREF1058_RS06770 - glycosyltransferase family 4 protein, at 400,176 to 401,324
_RS06770
HMPREF1058_RS06765: HMPREF1058_RS06765 - glycosyltransferase family 1 protein, at 401,336 to 402,469
_RS06765
HMPREF1058_RS06760: HMPREF1058_RS06760 - glycosyltransferase family 4 protein, at 402,466 to 403,617
_RS06760
Position (kb) 401
402
403 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.360 kb on - strand, within HMPREF1058_RS06770 at 400.507 kb on + strand, within HMPREF1058_RS06770 at 400.511 kb on + strand, within HMPREF1058_RS06770 at 400.586 kb on + strand, within HMPREF1058_RS06770 at 400.586 kb on + strand, within HMPREF1058_RS06770 at 400.607 kb on - strand, within HMPREF1058_RS06770 at 400.611 kb on - strand, within HMPREF1058_RS06770 at 400.611 kb on - strand, within HMPREF1058_RS06770 at 400.611 kb on - strand, within HMPREF1058_RS06770 at 400.615 kb on - strand, within HMPREF1058_RS06770 at 400.767 kb on - strand, within HMPREF1058_RS06770 at 400.869 kb on + strand, within HMPREF1058_RS06770 at 400.925 kb on - strand, within HMPREF1058_RS06770 at 400.938 kb on + strand, within HMPREF1058_RS06770 at 400.938 kb on + strand, within HMPREF1058_RS06770 at 400.938 kb on + strand, within HMPREF1058_RS06770 at 400.939 kb on - strand, within HMPREF1058_RS06770 at 400.939 kb on - strand, within HMPREF1058_RS06770 at 400.939 kb on - strand, within HMPREF1058_RS06770 at 401.067 kb on + strand, within HMPREF1058_RS06770 at 401.067 kb on + strand, within HMPREF1058_RS06770 at 401.067 kb on + strand, within HMPREF1058_RS06770 at 401.068 kb on - strand, within HMPREF1058_RS06770 at 401.068 kb on - strand, within HMPREF1058_RS06770 at 401.137 kb on - strand, within HMPREF1058_RS06770 at 401.213 kb on + strand at 401.216 kb on - strand at 401.216 kb on - strand at 401.217 kb on + strand at 401.218 kb on - strand at 401.245 kb on + strand at 401.266 kb on - strand at 401.304 kb on - strand at 401.337 kb on + strand at 401.349 kb on - strand at 401.431 kb on + strand at 401.431 kb on - strand at 401.431 kb on - strand at 401.453 kb on - strand, within HMPREF1058_RS06765 at 401.488 kb on + strand, within HMPREF1058_RS06765 at 401.491 kb on - strand, within HMPREF1058_RS06765 at 401.567 kb on + strand, within HMPREF1058_RS06765 at 401.649 kb on - strand, within HMPREF1058_RS06765 at 401.695 kb on + strand, within HMPREF1058_RS06765 at 401.711 kb on - strand, within HMPREF1058_RS06765 at 401.711 kb on - strand, within HMPREF1058_RS06765 at 401.764 kb on + strand, within HMPREF1058_RS06765 at 401.764 kb on + strand, within HMPREF1058_RS06765 at 401.764 kb on + strand, within HMPREF1058_RS06765 at 401.856 kb on + strand, within HMPREF1058_RS06765 at 401.856 kb on + strand, within HMPREF1058_RS06765 at 401.861 kb on + strand, within HMPREF1058_RS06765 at 401.877 kb on - strand, within HMPREF1058_RS06765 at 401.879 kb on + strand, within HMPREF1058_RS06765 at 401.880 kb on - strand, within HMPREF1058_RS06765 at 401.962 kb on + strand, within HMPREF1058_RS06765 at 402.088 kb on - strand, within HMPREF1058_RS06765 at 402.106 kb on - strand, within HMPREF1058_RS06765 at 402.109 kb on + strand, within HMPREF1058_RS06765 at 402.109 kb on + strand, within HMPREF1058_RS06765 at 402.109 kb on + strand, within HMPREF1058_RS06765 at 402.109 kb on + strand, within HMPREF1058_RS06765 at 402.110 kb on - strand, within HMPREF1058_RS06765 at 402.110 kb on - strand, within HMPREF1058_RS06765 at 402.125 kb on + strand, within HMPREF1058_RS06765 at 402.197 kb on + strand, within HMPREF1058_RS06765 at 402.198 kb on - strand, within HMPREF1058_RS06765 at 402.198 kb on - strand, within HMPREF1058_RS06765 at 402.240 kb on - strand, within HMPREF1058_RS06765 at 402.299 kb on + strand, within HMPREF1058_RS06765 at 402.303 kb on - strand, within HMPREF1058_RS06765 at 402.351 kb on + strand, within HMPREF1058_RS06765 at 402.352 kb on - strand, within HMPREF1058_RS06765 at 402.352 kb on - strand, within HMPREF1058_RS06765 at 402.456 kb on + strand at 402.457 kb on - strand at 402.776 kb on + strand, within HMPREF1058_RS06760 at 402.776 kb on + strand, within HMPREF1058_RS06760 at 402.779 kb on - strand, within HMPREF1058_RS06760 at 402.844 kb on + strand, within HMPREF1058_RS06760 at 402.844 kb on + strand, within HMPREF1058_RS06760 at 402.846 kb on + strand, within HMPREF1058_RS06760 at 402.847 kb on - strand, within HMPREF1058_RS06760 at 402.909 kb on + strand, within HMPREF1058_RS06760 at 402.984 kb on - strand, within HMPREF1058_RS06760 at 402.984 kb on - strand, within HMPREF1058_RS06760 at 402.984 kb on - strand, within HMPREF1058_RS06760 at 403.223 kb on + strand, within HMPREF1058_RS06760 at 403.237 kb on - strand, within HMPREF1058_RS06760 at 403.362 kb on - strand, within HMPREF1058_RS06760 at 403.362 kb on - strand, within HMPREF1058_RS06760 at 403.389 kb on - strand, within HMPREF1058_RS06760 at 403.397 kb on - strand, within HMPREF1058_RS06760
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinan from sugar beet 5mg/ml (C) remove 400,360 - HMPREF1058_RS06770 0.16 -0.0 400,507 + HMPREF1058_RS06770 0.29 +0.4 400,511 + HMPREF1058_RS06770 0.29 +1.0 400,586 + HMPREF1058_RS06770 0.36 +0.3 400,586 + HMPREF1058_RS06770 0.36 -1.8 400,607 - HMPREF1058_RS06770 0.38 -1.3 400,611 - HMPREF1058_RS06770 0.38 -1.7 400,611 - HMPREF1058_RS06770 0.38 +0.6 400,611 - HMPREF1058_RS06770 0.38 -0.0 400,615 - HMPREF1058_RS06770 0.38 +0.9 400,767 - HMPREF1058_RS06770 0.51 -0.6 400,869 + HMPREF1058_RS06770 0.60 +0.0 400,925 - HMPREF1058_RS06770 0.65 -1.1 400,938 + HMPREF1058_RS06770 0.66 -0.8 400,938 + HMPREF1058_RS06770 0.66 -0.0 400,938 + HMPREF1058_RS06770 0.66 +0.2 400,939 - HMPREF1058_RS06770 0.66 +0.1 400,939 - HMPREF1058_RS06770 0.66 -2.0 400,939 - HMPREF1058_RS06770 0.66 -0.5 401,067 + HMPREF1058_RS06770 0.78 -1.1 401,067 + HMPREF1058_RS06770 0.78 +0.2 401,067 + HMPREF1058_RS06770 0.78 +0.4 401,068 - HMPREF1058_RS06770 0.78 +1.3 401,068 - HMPREF1058_RS06770 0.78 -0.2 401,137 - HMPREF1058_RS06770 0.84 +0.7 401,213 + -0.1 401,216 - -0.2 401,216 - -0.2 401,217 + -0.5 401,218 - -0.9 401,245 + +0.3 401,266 - +0.6 401,304 - -0.8 401,337 + +0.2 401,349 - -1.6 401,431 + -1.5 401,431 - +0.7 401,431 - -1.3 401,453 - HMPREF1058_RS06765 0.10 -0.3 401,488 + HMPREF1058_RS06765 0.13 -0.3 401,491 - HMPREF1058_RS06765 0.14 -0.3 401,567 + HMPREF1058_RS06765 0.20 +1.1 401,649 - HMPREF1058_RS06765 0.28 +0.9 401,695 + HMPREF1058_RS06765 0.32 -0.5 401,711 - HMPREF1058_RS06765 0.33 -0.0 401,711 - HMPREF1058_RS06765 0.33 +0.1 401,764 + HMPREF1058_RS06765 0.38 -0.5 401,764 + HMPREF1058_RS06765 0.38 +0.1 401,764 + HMPREF1058_RS06765 0.38 -1.7 401,856 + HMPREF1058_RS06765 0.46 +0.7 401,856 + HMPREF1058_RS06765 0.46 +0.3 401,861 + HMPREF1058_RS06765 0.46 -0.5 401,877 - HMPREF1058_RS06765 0.48 +0.9 401,879 + HMPREF1058_RS06765 0.48 +0.2 401,880 - HMPREF1058_RS06765 0.48 -1.3 401,962 + HMPREF1058_RS06765 0.55 +1.3 402,088 - HMPREF1058_RS06765 0.66 +0.1 402,106 - HMPREF1058_RS06765 0.68 -0.2 402,109 + HMPREF1058_RS06765 0.68 +1.8 402,109 + HMPREF1058_RS06765 0.68 -0.3 402,109 + HMPREF1058_RS06765 0.68 +2.3 402,109 + HMPREF1058_RS06765 0.68 +1.1 402,110 - HMPREF1058_RS06765 0.68 +0.3 402,110 - HMPREF1058_RS06765 0.68 +0.2 402,125 + HMPREF1058_RS06765 0.70 +0.9 402,197 + HMPREF1058_RS06765 0.76 +1.5 402,198 - HMPREF1058_RS06765 0.76 -0.2 402,198 - HMPREF1058_RS06765 0.76 -0.1 402,240 - HMPREF1058_RS06765 0.80 +1.2 402,299 + HMPREF1058_RS06765 0.85 +0.3 402,303 - HMPREF1058_RS06765 0.85 +0.3 402,351 + HMPREF1058_RS06765 0.90 +2.5 402,352 - HMPREF1058_RS06765 0.90 -1.9 402,352 - HMPREF1058_RS06765 0.90 +0.5 402,456 + -2.0 402,457 - -0.0 402,776 + HMPREF1058_RS06760 0.27 -0.3 402,776 + HMPREF1058_RS06760 0.27 -0.5 402,779 - HMPREF1058_RS06760 0.27 -0.3 402,844 + HMPREF1058_RS06760 0.33 +0.1 402,844 + HMPREF1058_RS06760 0.33 +0.3 402,846 + HMPREF1058_RS06760 0.33 -0.2 402,847 - HMPREF1058_RS06760 0.33 +2.4 402,909 + HMPREF1058_RS06760 0.38 +1.3 402,984 - HMPREF1058_RS06760 0.45 +0.8 402,984 - HMPREF1058_RS06760 0.45 +0.1 402,984 - HMPREF1058_RS06760 0.45 -0.1 403,223 + HMPREF1058_RS06760 0.66 +1.6 403,237 - HMPREF1058_RS06760 0.67 -1.4 403,362 - HMPREF1058_RS06760 0.78 -0.9 403,362 - HMPREF1058_RS06760 0.78 -0.4 403,389 - HMPREF1058_RS06760 0.80 +0.4 403,397 - HMPREF1058_RS06760 0.81 +0.7
Or see this region's nucleotide sequence