Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03750 and CCNA_03751 are separated by 31 nucleotides CCNA_03751 and CCNA_03752 are separated by 128 nucleotides
CCNA_03750: CCNA_03750 - threonine deaminase (EC 4.3.1.19) (from data) , at 3,919,811 to 3,921,013
_03750
CCNA_03751: CCNA_03751 - peptidyl-prolyl cis-trans isomerase, at 3,921,045 to 3,921,557
_03751
CCNA_03752: CCNA_03752 - UTP-glucose-1-phosphate uridylyltransferase, at 3,921,686 to 3,922,582
_03752
Position (kb)
3921
3922 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3920.056 kb on + strand, within CCNA_03750 at 3920.056 kb on + strand, within CCNA_03750 at 3920.064 kb on - strand, within CCNA_03750 at 3920.107 kb on + strand, within CCNA_03750 at 3920.107 kb on + strand, within CCNA_03750 at 3920.113 kb on + strand, within CCNA_03750 at 3920.115 kb on - strand, within CCNA_03750 at 3920.115 kb on - strand, within CCNA_03750 at 3920.115 kb on - strand at 3920.138 kb on - strand, within CCNA_03750 at 3920.139 kb on - strand, within CCNA_03750 at 3920.140 kb on - strand, within CCNA_03750 at 3920.148 kb on + strand, within CCNA_03750 at 3920.167 kb on + strand, within CCNA_03750 at 3920.167 kb on - strand, within CCNA_03750 at 3920.205 kb on + strand, within CCNA_03750 at 3920.225 kb on - strand, within CCNA_03750 at 3920.228 kb on + strand, within CCNA_03750 at 3920.230 kb on - strand, within CCNA_03750 at 3920.235 kb on - strand, within CCNA_03750 at 3920.236 kb on - strand, within CCNA_03750 at 3920.278 kb on + strand, within CCNA_03750 at 3920.286 kb on - strand, within CCNA_03750 at 3920.286 kb on - strand, within CCNA_03750 at 3920.346 kb on - strand, within CCNA_03750 at 3920.351 kb on + strand, within CCNA_03750 at 3920.377 kb on + strand, within CCNA_03750 at 3920.412 kb on + strand, within CCNA_03750 at 3920.442 kb on - strand, within CCNA_03750 at 3920.477 kb on + strand, within CCNA_03750 at 3920.477 kb on + strand, within CCNA_03750 at 3920.477 kb on + strand, within CCNA_03750 at 3920.485 kb on - strand, within CCNA_03750 at 3920.527 kb on - strand, within CCNA_03750 at 3920.527 kb on - strand, within CCNA_03750 at 3920.532 kb on - strand, within CCNA_03750 at 3920.554 kb on - strand, within CCNA_03750 at 3920.583 kb on - strand, within CCNA_03750 at 3920.583 kb on - strand, within CCNA_03750 at 3920.588 kb on - strand, within CCNA_03750 at 3920.602 kb on + strand, within CCNA_03750 at 3920.602 kb on + strand, within CCNA_03750 at 3920.612 kb on + strand, within CCNA_03750 at 3920.620 kb on + strand, within CCNA_03750 at 3920.620 kb on + strand, within CCNA_03750 at 3920.645 kb on + strand, within CCNA_03750 at 3920.647 kb on - strand, within CCNA_03750 at 3920.665 kb on + strand, within CCNA_03750 at 3920.665 kb on + strand, within CCNA_03750 at 3920.668 kb on - strand, within CCNA_03750 at 3920.668 kb on - strand, within CCNA_03750 at 3920.668 kb on - strand, within CCNA_03750 at 3920.670 kb on + strand, within CCNA_03750 at 3920.673 kb on - strand, within CCNA_03750 at 3920.678 kb on - strand, within CCNA_03750 at 3920.680 kb on + strand, within CCNA_03750 at 3920.680 kb on - strand, within CCNA_03750 at 3920.700 kb on + strand, within CCNA_03750 at 3920.747 kb on + strand, within CCNA_03750 at 3920.747 kb on + strand, within CCNA_03750 at 3920.755 kb on - strand, within CCNA_03750 at 3920.777 kb on + strand, within CCNA_03750 at 3920.821 kb on + strand, within CCNA_03750 at 3920.821 kb on + strand, within CCNA_03750 at 3920.829 kb on - strand, within CCNA_03750 at 3920.875 kb on - strand, within CCNA_03750 at 3920.891 kb on + strand, within CCNA_03750 at 3920.891 kb on + strand, within CCNA_03750 at 3920.899 kb on - strand at 3920.905 kb on + strand at 3920.918 kb on + strand at 3920.958 kb on + strand at 3920.958 kb on + strand at 3920.958 kb on + strand at 3920.958 kb on + strand at 3920.966 kb on - strand at 3920.966 kb on - strand at 3920.974 kb on - strand at 3920.976 kb on - strand at 3920.988 kb on - strand at 3921.015 kb on - strand at 3921.021 kb on - strand at 3921.060 kb on + strand at 3921.060 kb on + strand at 3921.075 kb on - strand at 3921.082 kb on - strand at 3921.123 kb on + strand, within CCNA_03751 at 3921.130 kb on + strand at 3921.130 kb on + strand, within CCNA_03751 at 3921.130 kb on + strand, within CCNA_03751 at 3921.130 kb on + strand, within CCNA_03751 at 3921.135 kb on + strand, within CCNA_03751 at 3921.138 kb on - strand, within CCNA_03751 at 3921.143 kb on - strand, within CCNA_03751 at 3921.145 kb on + strand, within CCNA_03751 at 3921.150 kb on + strand, within CCNA_03751 at 3921.150 kb on + strand, within CCNA_03751 at 3921.150 kb on + strand, within CCNA_03751 at 3921.153 kb on - strand, within CCNA_03751 at 3921.153 kb on - strand, within CCNA_03751 at 3921.153 kb on - strand, within CCNA_03751 at 3921.158 kb on - strand, within CCNA_03751 at 3921.158 kb on - strand, within CCNA_03751 at 3921.182 kb on - strand, within CCNA_03751 at 3921.184 kb on + strand, within CCNA_03751 at 3921.191 kb on + strand, within CCNA_03751 at 3921.191 kb on + strand, within CCNA_03751 at 3921.192 kb on - strand, within CCNA_03751 at 3921.209 kb on - strand, within CCNA_03751 at 3921.216 kb on - strand, within CCNA_03751 at 3921.276 kb on + strand, within CCNA_03751 at 3921.284 kb on - strand, within CCNA_03751 at 3921.284 kb on - strand, within CCNA_03751 at 3921.297 kb on - strand, within CCNA_03751 at 3921.316 kb on + strand, within CCNA_03751 at 3921.324 kb on - strand, within CCNA_03751 at 3921.324 kb on - strand, within CCNA_03751 at 3921.324 kb on - strand, within CCNA_03751 at 3921.324 kb on - strand, within CCNA_03751 at 3921.331 kb on + strand, within CCNA_03751 at 3921.344 kb on - strand, within CCNA_03751 at 3921.349 kb on - strand, within CCNA_03751 at 3921.354 kb on + strand, within CCNA_03751 at 3921.362 kb on - strand, within CCNA_03751 at 3921.373 kb on + strand, within CCNA_03751 at 3921.373 kb on + strand, within CCNA_03751 at 3921.373 kb on + strand, within CCNA_03751 at 3921.373 kb on + strand, within CCNA_03751 at 3921.373 kb on + strand, within CCNA_03751 at 3921.373 kb on + strand, within CCNA_03751 at 3921.373 kb on + strand, within CCNA_03751 at 3921.378 kb on + strand, within CCNA_03751 at 3921.381 kb on - strand, within CCNA_03751 at 3921.381 kb on - strand, within CCNA_03751 at 3921.381 kb on - strand, within CCNA_03751 at 3921.381 kb on - strand, within CCNA_03751 at 3921.381 kb on - strand, within CCNA_03751 at 3921.381 kb on - strand, within CCNA_03751 at 3921.381 kb on - strand, within CCNA_03751 at 3921.381 kb on - strand, within CCNA_03751 at 3921.386 kb on - strand, within CCNA_03751 at 3921.387 kb on + strand at 3921.396 kb on - strand, within CCNA_03751 at 3921.406 kb on - strand, within CCNA_03751 at 3921.406 kb on - strand, within CCNA_03751 at 3921.406 kb on - strand, within CCNA_03751 at 3921.431 kb on - strand, within CCNA_03751 at 3921.584 kb on + strand at 3921.584 kb on + strand at 3921.584 kb on + strand at 3921.592 kb on - strand at 3921.592 kb on - strand at 3921.614 kb on + strand at 3921.615 kb on + strand at 3921.615 kb on + strand at 3921.622 kb on - strand at 3921.623 kb on - strand at 3921.639 kb on + strand at 3921.695 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 3,920,056 + CCNA_03750 0.20 -3.5 3,920,056 + CCNA_03750 0.20 -4.1 3,920,064 - CCNA_03750 0.21 -2.5 3,920,107 + CCNA_03750 0.25 -2.7 3,920,107 + CCNA_03750 0.25 -3.1 3,920,113 + CCNA_03750 0.25 -1.7 3,920,115 - CCNA_03750 0.25 -3.1 3,920,115 - CCNA_03750 0.25 -2.3 3,920,115 - -0.1 3,920,138 - CCNA_03750 0.27 -1.0 3,920,139 - CCNA_03750 0.27 -2.9 3,920,140 - CCNA_03750 0.27 -0.1 3,920,148 + CCNA_03750 0.28 -3.0 3,920,167 + CCNA_03750 0.30 -4.8 3,920,167 - CCNA_03750 0.30 -3.7 3,920,205 + CCNA_03750 0.33 -3.6 3,920,225 - CCNA_03750 0.34 -2.5 3,920,228 + CCNA_03750 0.35 -0.1 3,920,230 - CCNA_03750 0.35 -1.4 3,920,235 - CCNA_03750 0.35 -3.9 3,920,236 - CCNA_03750 0.35 -3.8 3,920,278 + CCNA_03750 0.39 -1.9 3,920,286 - CCNA_03750 0.39 -3.1 3,920,286 - CCNA_03750 0.39 -3.4 3,920,346 - CCNA_03750 0.44 -2.2 3,920,351 + CCNA_03750 0.45 -1.6 3,920,377 + CCNA_03750 0.47 -3.7 3,920,412 + CCNA_03750 0.50 -4.2 3,920,442 - CCNA_03750 0.52 -3.4 3,920,477 + CCNA_03750 0.55 -2.6 3,920,477 + CCNA_03750 0.55 -3.0 3,920,477 + CCNA_03750 0.55 -0.6 3,920,485 - CCNA_03750 0.56 -2.3 3,920,527 - CCNA_03750 0.60 -3.2 3,920,527 - CCNA_03750 0.60 -2.5 3,920,532 - CCNA_03750 0.60 -0.3 3,920,554 - CCNA_03750 0.62 -3.5 3,920,583 - CCNA_03750 0.64 -0.9 3,920,583 - CCNA_03750 0.64 -2.8 3,920,588 - CCNA_03750 0.65 -2.5 3,920,602 + CCNA_03750 0.66 +0.7 3,920,602 + CCNA_03750 0.66 -4.0 3,920,612 + CCNA_03750 0.67 -3.2 3,920,620 + CCNA_03750 0.67 -3.9 3,920,620 + CCNA_03750 0.67 -2.1 3,920,645 + CCNA_03750 0.69 -2.1 3,920,647 - CCNA_03750 0.69 -2.2 3,920,665 + CCNA_03750 0.71 -3.1 3,920,665 + CCNA_03750 0.71 -4.4 3,920,668 - CCNA_03750 0.71 -2.3 3,920,668 - CCNA_03750 0.71 -2.1 3,920,668 - CCNA_03750 0.71 -0.1 3,920,670 + CCNA_03750 0.71 -3.7 3,920,673 - CCNA_03750 0.72 -1.9 3,920,678 - CCNA_03750 0.72 -4.1 3,920,680 + CCNA_03750 0.72 -4.0 3,920,680 - CCNA_03750 0.72 -2.9 3,920,700 + CCNA_03750 0.74 -3.8 3,920,747 + CCNA_03750 0.78 -1.9 3,920,747 + CCNA_03750 0.78 -3.8 3,920,755 - CCNA_03750 0.78 -2.7 3,920,777 + CCNA_03750 0.80 +0.3 3,920,821 + CCNA_03750 0.84 -3.0 3,920,821 + CCNA_03750 0.84 -2.6 3,920,829 - CCNA_03750 0.85 -4.0 3,920,875 - CCNA_03750 0.88 -1.0 3,920,891 + CCNA_03750 0.90 -3.2 3,920,891 + CCNA_03750 0.90 -1.8 3,920,899 - -0.9 3,920,905 + -3.6 3,920,918 + -1.9 3,920,958 + -0.7 3,920,958 + -2.6 3,920,958 + +0.7 3,920,958 + -3.4 3,920,966 - -2.4 3,920,966 - -4.6 3,920,974 - -3.9 3,920,976 - -3.3 3,920,988 - -2.9 3,921,015 - +0.8 3,921,021 - +1.3 3,921,060 + +0.8 3,921,060 + +1.1 3,921,075 - +0.5 3,921,082 - +1.2 3,921,123 + CCNA_03751 0.15 -1.6 3,921,130 + +0.9 3,921,130 + CCNA_03751 0.17 +1.6 3,921,130 + CCNA_03751 0.17 +0.4 3,921,130 + CCNA_03751 0.17 +0.1 3,921,135 + CCNA_03751 0.18 +0.2 3,921,138 - CCNA_03751 0.18 +0.3 3,921,143 - CCNA_03751 0.19 +0.6 3,921,145 + CCNA_03751 0.19 -0.3 3,921,150 + CCNA_03751 0.20 +0.5 3,921,150 + CCNA_03751 0.20 +0.2 3,921,150 + CCNA_03751 0.20 +1.5 3,921,153 - CCNA_03751 0.21 +0.4 3,921,153 - CCNA_03751 0.21 +1.4 3,921,153 - CCNA_03751 0.21 +2.3 3,921,158 - CCNA_03751 0.22 +0.1 3,921,158 - CCNA_03751 0.22 +2.0 3,921,182 - CCNA_03751 0.27 +0.1 3,921,184 + CCNA_03751 0.27 +0.0 3,921,191 + CCNA_03751 0.28 -0.9 3,921,191 + CCNA_03751 0.28 +0.7 3,921,192 - CCNA_03751 0.29 +0.1 3,921,209 - CCNA_03751 0.32 +1.2 3,921,216 - CCNA_03751 0.33 +0.1 3,921,276 + CCNA_03751 0.45 +0.3 3,921,284 - CCNA_03751 0.47 +0.0 3,921,284 - CCNA_03751 0.47 -2.1 3,921,297 - CCNA_03751 0.49 +1.3 3,921,316 + CCNA_03751 0.53 -0.6 3,921,324 - CCNA_03751 0.54 +0.6 3,921,324 - CCNA_03751 0.54 +0.3 3,921,324 - CCNA_03751 0.54 +0.4 3,921,324 - CCNA_03751 0.54 +0.4 3,921,331 + CCNA_03751 0.56 -0.2 3,921,344 - CCNA_03751 0.58 -0.3 3,921,349 - CCNA_03751 0.59 +0.8 3,921,354 + CCNA_03751 0.60 +0.6 3,921,362 - CCNA_03751 0.62 +1.4 3,921,373 + CCNA_03751 0.64 -0.9 3,921,373 + CCNA_03751 0.64 -0.2 3,921,373 + CCNA_03751 0.64 +0.4 3,921,373 + CCNA_03751 0.64 -1.3 3,921,373 + CCNA_03751 0.64 +0.1 3,921,373 + CCNA_03751 0.64 -1.9 3,921,373 + CCNA_03751 0.64 -1.3 3,921,378 + CCNA_03751 0.65 -1.4 3,921,381 - CCNA_03751 0.65 +0.8 3,921,381 - CCNA_03751 0.65 +0.4 3,921,381 - CCNA_03751 0.65 +0.3 3,921,381 - CCNA_03751 0.65 +0.2 3,921,381 - CCNA_03751 0.65 +0.2 3,921,381 - CCNA_03751 0.65 +1.7 3,921,381 - CCNA_03751 0.65 +1.4 3,921,381 - CCNA_03751 0.65 +0.1 3,921,386 - CCNA_03751 0.66 +0.9 3,921,387 + +0.3 3,921,396 - CCNA_03751 0.68 +1.4 3,921,406 - CCNA_03751 0.70 +2.4 3,921,406 - CCNA_03751 0.70 +0.9 3,921,406 - CCNA_03751 0.70 +0.3 3,921,431 - CCNA_03751 0.75 +0.8 3,921,584 + -1.1 3,921,584 + -1.8 3,921,584 + -0.4 3,921,592 - -0.7 3,921,592 - +0.6 3,921,614 + -0.5 3,921,615 + -0.3 3,921,615 + -0.3 3,921,622 - -0.5 3,921,623 - -2.5 3,921,639 + +1.8 3,921,695 + -0.1
Or see this region's nucleotide sequence