Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03751

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_03750 and CCNA_03751 are separated by 31 nucleotidesCCNA_03751 and CCNA_03752 are separated by 128 nucleotides CCNA_03750: CCNA_03750 - threonine deaminase (EC 4.3.1.19) (from data), at 3,919,811 to 3,921,013 _03750 CCNA_03751: CCNA_03751 - peptidyl-prolyl cis-trans isomerase, at 3,921,045 to 3,921,557 _03751 CCNA_03752: CCNA_03752 - UTP-glucose-1-phosphate uridylyltransferase, at 3,921,686 to 3,922,582 _03752 Position (kb) 3921 3922Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3920.056 kb on + strand, within CCNA_03750at 3920.056 kb on + strand, within CCNA_03750at 3920.064 kb on - strand, within CCNA_03750at 3920.107 kb on + strand, within CCNA_03750at 3920.107 kb on + strand, within CCNA_03750at 3920.113 kb on + strand, within CCNA_03750at 3920.115 kb on - strand, within CCNA_03750at 3920.115 kb on - strand, within CCNA_03750at 3920.115 kb on - strandat 3920.138 kb on - strand, within CCNA_03750at 3920.139 kb on - strand, within CCNA_03750at 3920.140 kb on - strand, within CCNA_03750at 3920.148 kb on + strand, within CCNA_03750at 3920.167 kb on + strand, within CCNA_03750at 3920.167 kb on - strand, within CCNA_03750at 3920.205 kb on + strand, within CCNA_03750at 3920.225 kb on - strand, within CCNA_03750at 3920.228 kb on + strand, within CCNA_03750at 3920.230 kb on - strand, within CCNA_03750at 3920.235 kb on - strand, within CCNA_03750at 3920.236 kb on - strand, within CCNA_03750at 3920.278 kb on + strand, within CCNA_03750at 3920.286 kb on - strand, within CCNA_03750at 3920.286 kb on - strand, within CCNA_03750at 3920.346 kb on - strand, within CCNA_03750at 3920.351 kb on + strand, within CCNA_03750at 3920.377 kb on + strand, within CCNA_03750at 3920.412 kb on + strand, within CCNA_03750at 3920.442 kb on - strand, within CCNA_03750at 3920.477 kb on + strand, within CCNA_03750at 3920.477 kb on + strand, within CCNA_03750at 3920.477 kb on + strand, within CCNA_03750at 3920.485 kb on - strand, within CCNA_03750at 3920.527 kb on - strand, within CCNA_03750at 3920.527 kb on - strand, within CCNA_03750at 3920.532 kb on - strand, within CCNA_03750at 3920.554 kb on - strand, within CCNA_03750at 3920.583 kb on - strand, within CCNA_03750at 3920.583 kb on - strand, within CCNA_03750at 3920.588 kb on - strand, within CCNA_03750at 3920.602 kb on + strand, within CCNA_03750at 3920.602 kb on + strand, within CCNA_03750at 3920.612 kb on + strand, within CCNA_03750at 3920.620 kb on + strand, within CCNA_03750at 3920.620 kb on + strand, within CCNA_03750at 3920.645 kb on + strand, within CCNA_03750at 3920.647 kb on - strand, within CCNA_03750at 3920.665 kb on + strand, within CCNA_03750at 3920.665 kb on + strand, within CCNA_03750at 3920.668 kb on - strand, within CCNA_03750at 3920.668 kb on - strand, within CCNA_03750at 3920.668 kb on - strand, within CCNA_03750at 3920.670 kb on + strand, within CCNA_03750at 3920.673 kb on - strand, within CCNA_03750at 3920.678 kb on - strand, within CCNA_03750at 3920.680 kb on + strand, within CCNA_03750at 3920.680 kb on - strand, within CCNA_03750at 3920.700 kb on + strand, within CCNA_03750at 3920.747 kb on + strand, within CCNA_03750at 3920.747 kb on + strand, within CCNA_03750at 3920.755 kb on - strand, within CCNA_03750at 3920.777 kb on + strand, within CCNA_03750at 3920.821 kb on + strand, within CCNA_03750at 3920.821 kb on + strand, within CCNA_03750at 3920.829 kb on - strand, within CCNA_03750at 3920.875 kb on - strand, within CCNA_03750at 3920.891 kb on + strand, within CCNA_03750at 3920.891 kb on + strand, within CCNA_03750at 3920.899 kb on - strandat 3920.905 kb on + strandat 3920.918 kb on + strandat 3920.958 kb on + strandat 3920.958 kb on + strandat 3920.958 kb on + strandat 3920.958 kb on + strandat 3920.966 kb on - strandat 3920.966 kb on - strandat 3920.974 kb on - strandat 3920.976 kb on - strandat 3920.988 kb on - strandat 3921.015 kb on - strandat 3921.021 kb on - strandat 3921.060 kb on + strandat 3921.060 kb on + strandat 3921.075 kb on - strandat 3921.082 kb on - strandat 3921.123 kb on + strand, within CCNA_03751at 3921.130 kb on + strandat 3921.130 kb on + strand, within CCNA_03751at 3921.130 kb on + strand, within CCNA_03751at 3921.130 kb on + strand, within CCNA_03751at 3921.135 kb on + strand, within CCNA_03751at 3921.138 kb on - strand, within CCNA_03751at 3921.143 kb on - strand, within CCNA_03751at 3921.145 kb on + strand, within CCNA_03751at 3921.150 kb on + strand, within CCNA_03751at 3921.150 kb on + strand, within CCNA_03751at 3921.150 kb on + strand, within CCNA_03751at 3921.153 kb on - strand, within CCNA_03751at 3921.153 kb on - strand, within CCNA_03751at 3921.153 kb on - strand, within CCNA_03751at 3921.158 kb on - strand, within CCNA_03751at 3921.158 kb on - strand, within CCNA_03751at 3921.182 kb on - strand, within CCNA_03751at 3921.184 kb on + strand, within CCNA_03751at 3921.191 kb on + strand, within CCNA_03751at 3921.191 kb on + strand, within CCNA_03751at 3921.192 kb on - strand, within CCNA_03751at 3921.209 kb on - strand, within CCNA_03751at 3921.216 kb on - strand, within CCNA_03751at 3921.276 kb on + strand, within CCNA_03751at 3921.284 kb on - strand, within CCNA_03751at 3921.284 kb on - strand, within CCNA_03751at 3921.297 kb on - strand, within CCNA_03751at 3921.316 kb on + strand, within CCNA_03751at 3921.324 kb on - strand, within CCNA_03751at 3921.324 kb on - strand, within CCNA_03751at 3921.324 kb on - strand, within CCNA_03751at 3921.324 kb on - strand, within CCNA_03751at 3921.331 kb on + strand, within CCNA_03751at 3921.344 kb on - strand, within CCNA_03751at 3921.349 kb on - strand, within CCNA_03751at 3921.354 kb on + strand, within CCNA_03751at 3921.362 kb on - strand, within CCNA_03751at 3921.373 kb on + strand, within CCNA_03751at 3921.373 kb on + strand, within CCNA_03751at 3921.373 kb on + strand, within CCNA_03751at 3921.373 kb on + strand, within CCNA_03751at 3921.373 kb on + strand, within CCNA_03751at 3921.373 kb on + strand, within CCNA_03751at 3921.373 kb on + strand, within CCNA_03751at 3921.378 kb on + strand, within CCNA_03751at 3921.381 kb on - strand, within CCNA_03751at 3921.381 kb on - strand, within CCNA_03751at 3921.381 kb on - strand, within CCNA_03751at 3921.381 kb on - strand, within CCNA_03751at 3921.381 kb on - strand, within CCNA_03751at 3921.381 kb on - strand, within CCNA_03751at 3921.381 kb on - strand, within CCNA_03751at 3921.381 kb on - strand, within CCNA_03751at 3921.386 kb on - strand, within CCNA_03751at 3921.387 kb on + strandat 3921.396 kb on - strand, within CCNA_03751at 3921.406 kb on - strand, within CCNA_03751at 3921.406 kb on - strand, within CCNA_03751at 3921.406 kb on - strand, within CCNA_03751at 3921.431 kb on - strand, within CCNA_03751at 3921.584 kb on + strandat 3921.584 kb on + strandat 3921.584 kb on + strandat 3921.592 kb on - strandat 3921.592 kb on - strandat 3921.614 kb on + strandat 3921.615 kb on + strandat 3921.615 kb on + strandat 3921.622 kb on - strandat 3921.623 kb on - strandat 3921.639 kb on + strandat 3921.695 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
3,920,056 + CCNA_03750 0.20 -3.5
3,920,056 + CCNA_03750 0.20 -4.1
3,920,064 - CCNA_03750 0.21 -2.5
3,920,107 + CCNA_03750 0.25 -2.7
3,920,107 + CCNA_03750 0.25 -3.1
3,920,113 + CCNA_03750 0.25 -1.7
3,920,115 - CCNA_03750 0.25 -3.1
3,920,115 - CCNA_03750 0.25 -2.3
3,920,115 - -0.1
3,920,138 - CCNA_03750 0.27 -1.0
3,920,139 - CCNA_03750 0.27 -2.9
3,920,140 - CCNA_03750 0.27 -0.1
3,920,148 + CCNA_03750 0.28 -3.0
3,920,167 + CCNA_03750 0.30 -4.8
3,920,167 - CCNA_03750 0.30 -3.7
3,920,205 + CCNA_03750 0.33 -3.6
3,920,225 - CCNA_03750 0.34 -2.5
3,920,228 + CCNA_03750 0.35 -0.1
3,920,230 - CCNA_03750 0.35 -1.4
3,920,235 - CCNA_03750 0.35 -3.9
3,920,236 - CCNA_03750 0.35 -3.8
3,920,278 + CCNA_03750 0.39 -1.9
3,920,286 - CCNA_03750 0.39 -3.1
3,920,286 - CCNA_03750 0.39 -3.4
3,920,346 - CCNA_03750 0.44 -2.2
3,920,351 + CCNA_03750 0.45 -1.6
3,920,377 + CCNA_03750 0.47 -3.7
3,920,412 + CCNA_03750 0.50 -4.2
3,920,442 - CCNA_03750 0.52 -3.4
3,920,477 + CCNA_03750 0.55 -2.6
3,920,477 + CCNA_03750 0.55 -3.0
3,920,477 + CCNA_03750 0.55 -0.6
3,920,485 - CCNA_03750 0.56 -2.3
3,920,527 - CCNA_03750 0.60 -3.2
3,920,527 - CCNA_03750 0.60 -2.5
3,920,532 - CCNA_03750 0.60 -0.3
3,920,554 - CCNA_03750 0.62 -3.5
3,920,583 - CCNA_03750 0.64 -0.9
3,920,583 - CCNA_03750 0.64 -2.8
3,920,588 - CCNA_03750 0.65 -2.5
3,920,602 + CCNA_03750 0.66 +0.7
3,920,602 + CCNA_03750 0.66 -4.0
3,920,612 + CCNA_03750 0.67 -3.2
3,920,620 + CCNA_03750 0.67 -3.9
3,920,620 + CCNA_03750 0.67 -2.1
3,920,645 + CCNA_03750 0.69 -2.1
3,920,647 - CCNA_03750 0.69 -2.2
3,920,665 + CCNA_03750 0.71 -3.1
3,920,665 + CCNA_03750 0.71 -4.4
3,920,668 - CCNA_03750 0.71 -2.3
3,920,668 - CCNA_03750 0.71 -2.1
3,920,668 - CCNA_03750 0.71 -0.1
3,920,670 + CCNA_03750 0.71 -3.7
3,920,673 - CCNA_03750 0.72 -1.9
3,920,678 - CCNA_03750 0.72 -4.1
3,920,680 + CCNA_03750 0.72 -4.0
3,920,680 - CCNA_03750 0.72 -2.9
3,920,700 + CCNA_03750 0.74 -3.8
3,920,747 + CCNA_03750 0.78 -1.9
3,920,747 + CCNA_03750 0.78 -3.8
3,920,755 - CCNA_03750 0.78 -2.7
3,920,777 + CCNA_03750 0.80 +0.3
3,920,821 + CCNA_03750 0.84 -3.0
3,920,821 + CCNA_03750 0.84 -2.6
3,920,829 - CCNA_03750 0.85 -4.0
3,920,875 - CCNA_03750 0.88 -1.0
3,920,891 + CCNA_03750 0.90 -3.2
3,920,891 + CCNA_03750 0.90 -1.8
3,920,899 - -0.9
3,920,905 + -3.6
3,920,918 + -1.9
3,920,958 + -0.7
3,920,958 + -2.6
3,920,958 + +0.7
3,920,958 + -3.4
3,920,966 - -2.4
3,920,966 - -4.6
3,920,974 - -3.9
3,920,976 - -3.3
3,920,988 - -2.9
3,921,015 - +0.8
3,921,021 - +1.3
3,921,060 + +0.8
3,921,060 + +1.1
3,921,075 - +0.5
3,921,082 - +1.2
3,921,123 + CCNA_03751 0.15 -1.6
3,921,130 + +0.9
3,921,130 + CCNA_03751 0.17 +1.6
3,921,130 + CCNA_03751 0.17 +0.4
3,921,130 + CCNA_03751 0.17 +0.1
3,921,135 + CCNA_03751 0.18 +0.2
3,921,138 - CCNA_03751 0.18 +0.3
3,921,143 - CCNA_03751 0.19 +0.6
3,921,145 + CCNA_03751 0.19 -0.3
3,921,150 + CCNA_03751 0.20 +0.5
3,921,150 + CCNA_03751 0.20 +0.2
3,921,150 + CCNA_03751 0.20 +1.5
3,921,153 - CCNA_03751 0.21 +0.4
3,921,153 - CCNA_03751 0.21 +1.4
3,921,153 - CCNA_03751 0.21 +2.3
3,921,158 - CCNA_03751 0.22 +0.1
3,921,158 - CCNA_03751 0.22 +2.0
3,921,182 - CCNA_03751 0.27 +0.1
3,921,184 + CCNA_03751 0.27 +0.0
3,921,191 + CCNA_03751 0.28 -0.9
3,921,191 + CCNA_03751 0.28 +0.7
3,921,192 - CCNA_03751 0.29 +0.1
3,921,209 - CCNA_03751 0.32 +1.2
3,921,216 - CCNA_03751 0.33 +0.1
3,921,276 + CCNA_03751 0.45 +0.3
3,921,284 - CCNA_03751 0.47 +0.0
3,921,284 - CCNA_03751 0.47 -2.1
3,921,297 - CCNA_03751 0.49 +1.3
3,921,316 + CCNA_03751 0.53 -0.6
3,921,324 - CCNA_03751 0.54 +0.6
3,921,324 - CCNA_03751 0.54 +0.3
3,921,324 - CCNA_03751 0.54 +0.4
3,921,324 - CCNA_03751 0.54 +0.4
3,921,331 + CCNA_03751 0.56 -0.2
3,921,344 - CCNA_03751 0.58 -0.3
3,921,349 - CCNA_03751 0.59 +0.8
3,921,354 + CCNA_03751 0.60 +0.6
3,921,362 - CCNA_03751 0.62 +1.4
3,921,373 + CCNA_03751 0.64 -0.9
3,921,373 + CCNA_03751 0.64 -0.2
3,921,373 + CCNA_03751 0.64 +0.4
3,921,373 + CCNA_03751 0.64 -1.3
3,921,373 + CCNA_03751 0.64 +0.1
3,921,373 + CCNA_03751 0.64 -1.9
3,921,373 + CCNA_03751 0.64 -1.3
3,921,378 + CCNA_03751 0.65 -1.4
3,921,381 - CCNA_03751 0.65 +0.8
3,921,381 - CCNA_03751 0.65 +0.4
3,921,381 - CCNA_03751 0.65 +0.3
3,921,381 - CCNA_03751 0.65 +0.2
3,921,381 - CCNA_03751 0.65 +0.2
3,921,381 - CCNA_03751 0.65 +1.7
3,921,381 - CCNA_03751 0.65 +1.4
3,921,381 - CCNA_03751 0.65 +0.1
3,921,386 - CCNA_03751 0.66 +0.9
3,921,387 + +0.3
3,921,396 - CCNA_03751 0.68 +1.4
3,921,406 - CCNA_03751 0.70 +2.4
3,921,406 - CCNA_03751 0.70 +0.9
3,921,406 - CCNA_03751 0.70 +0.3
3,921,431 - CCNA_03751 0.75 +0.8
3,921,584 + -1.1
3,921,584 + -1.8
3,921,584 + -0.4
3,921,592 - -0.7
3,921,592 - +0.6
3,921,614 + -0.5
3,921,615 + -0.3
3,921,615 + -0.3
3,921,622 - -0.5
3,921,623 - -2.5
3,921,639 + +1.8
3,921,695 + -0.1

Or see this region's nucleotide sequence