Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00003

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00001 and CCNA_00002 overlap by 4 nucleotidesCCNA_00002 and CCNA_00003 overlap by 4 nucleotidesCCNA_00003 and CCNA_00004 are separated by 1 nucleotidesCCNA_00004 and CCNA_00005 are separated by 31 nucleotides CCNA_00001: CCNA_00001 - ATP/GTP-binding protein, at 202 to 1,107 _00001 CCNA_00002: CCNA_00002 - septum formation protein Maf, at 1,104 to 1,703 _00002 CCNA_00003: CCNA_00003 - shikimate dehydrogenase (EC 1.1.1.25) (from data), at 1,700 to 2,557 _00003 CCNA_00004: CCNA_00004 - dephospho-CoA kinase, at 2,559 to 3,158 _00004 CCNA_00005: CCNA_00005 - DNA polymerase III, epsilon chain, at 3,190 to 3,903 _00005 Position (kb) 1 2 3Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 0.705 kb on + strand, within CCNA_00001at 0.705 kb on + strand, within CCNA_00001at 0.718 kb on - strand, within CCNA_00001at 0.738 kb on - strand, within CCNA_00001at 0.748 kb on - strand, within CCNA_00001at 0.829 kb on - strand, within CCNA_00001at 1.036 kb on + strandat 1.036 kb on + strandat 1.067 kb on - strandat 1.078 kb on + strandat 1.079 kb on - strandat 1.079 kb on - strandat 1.083 kb on + strandat 1.083 kb on + strandat 1.086 kb on - strandat 1.086 kb on - strandat 1.091 kb on - strandat 1.096 kb on + strandat 1.096 kb on - strandat 1.104 kb on - strandat 1.114 kb on + strandat 1.114 kb on + strandat 1.114 kb on + strandat 1.131 kb on + strandat 1.131 kb on + strandat 1.155 kb on + strandat 1.192 kb on + strand, within CCNA_00002at 1.220 kb on + strand, within CCNA_00002at 1.248 kb on + strand, within CCNA_00002at 1.261 kb on + strand, within CCNA_00002at 1.261 kb on + strand, within CCNA_00002at 1.292 kb on + strand, within CCNA_00002at 1.293 kb on + strand, within CCNA_00002at 1.293 kb on - strand, within CCNA_00002at 1.300 kb on - strand, within CCNA_00002at 1.300 kb on - strand, within CCNA_00002at 1.319 kb on + strand, within CCNA_00002at 1.324 kb on + strand, within CCNA_00002at 1.324 kb on + strand, within CCNA_00002at 1.327 kb on - strand, within CCNA_00002at 1.329 kb on + strand, within CCNA_00002at 1.329 kb on + strand, within CCNA_00002at 1.337 kb on - strand, within CCNA_00002at 1.337 kb on - strand, within CCNA_00002at 1.342 kb on + strand, within CCNA_00002at 1.350 kb on - strand, within CCNA_00002at 1.364 kb on - strand, within CCNA_00002at 1.374 kb on + strand, within CCNA_00002at 1.386 kb on + strand, within CCNA_00002at 1.399 kb on + strand, within CCNA_00002at 1.399 kb on + strand, within CCNA_00002at 1.399 kb on + strand, within CCNA_00002at 1.399 kb on + strand, within CCNA_00002at 1.399 kb on + strand, within CCNA_00002at 1.401 kb on + strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.417 kb on - strand, within CCNA_00002at 1.428 kb on - strand, within CCNA_00002at 1.459 kb on + strand, within CCNA_00002at 1.467 kb on + strand, within CCNA_00002at 1.486 kb on - strand, within CCNA_00002at 1.531 kb on + strand, within CCNA_00002at 1.531 kb on + strand, within CCNA_00002at 1.531 kb on + strand, within CCNA_00002at 1.531 kb on + strand, within CCNA_00002at 1.531 kb on + strand, within CCNA_00002at 1.534 kb on + strand, within CCNA_00002at 1.534 kb on + strand, within CCNA_00002at 1.534 kb on + strand, within CCNA_00002at 1.534 kb on + strand, within CCNA_00002at 1.539 kb on - strand, within CCNA_00002at 1.539 kb on - strand, within CCNA_00002at 1.542 kb on - strand, within CCNA_00002at 1.542 kb on - strand, within CCNA_00002at 1.542 kb on - strand, within CCNA_00002at 1.542 kb on - strand, within CCNA_00002at 1.542 kb on - strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.559 kb on + strand, within CCNA_00002at 1.559 kb on + strand, within CCNA_00002at 1.562 kb on - strand, within CCNA_00002at 1.562 kb on - strand, within CCNA_00002at 1.562 kb on - strand, within CCNA_00002at 1.562 kb on - strand, within CCNA_00002at 1.567 kb on - strand, within CCNA_00002at 1.567 kb on - strand, within CCNA_00002at 1.567 kb on - strand, within CCNA_00002at 1.576 kb on + strand, within CCNA_00002at 1.576 kb on + strand, within CCNA_00002at 1.576 kb on + strand, within CCNA_00002at 1.581 kb on + strand, within CCNA_00002at 1.581 kb on + strand, within CCNA_00002at 1.581 kb on - strand, within CCNA_00002at 1.589 kb on - strand, within CCNA_00002at 1.591 kb on - strand, within CCNA_00002at 1.605 kb on - strand, within CCNA_00002at 1.610 kb on + strand, within CCNA_00002at 1.639 kb on + strand, within CCNA_00002at 1.647 kb on - strandat 1.663 kb on - strandat 1.689 kb on + strandat 1.696 kb on + strandat 1.697 kb on - strandat 1.697 kb on - strandat 1.739 kb on + strandat 1.739 kb on + strandat 1.747 kb on - strandat 1.751 kb on - strandat 1.768 kb on - strandat 1.814 kb on - strand, within CCNA_00003at 1.817 kb on + strand, within CCNA_00003at 1.849 kb on + strand, within CCNA_00003at 1.849 kb on + strand, within CCNA_00003at 1.901 kb on - strand, within CCNA_00003at 1.905 kb on + strand, within CCNA_00003at 1.919 kb on + strand, within CCNA_00003at 1.980 kb on + strand, within CCNA_00003at 2.039 kb on - strand, within CCNA_00003at 2.044 kb on - strand, within CCNA_00003at 2.077 kb on - strand, within CCNA_00003at 2.161 kb on + strand, within CCNA_00003at 2.161 kb on + strand, within CCNA_00003at 2.169 kb on - strand, within CCNA_00003at 2.169 kb on - strand, within CCNA_00003at 2.169 kb on - strand, within CCNA_00003at 2.189 kb on - strand, within CCNA_00003at 2.196 kb on + strand, within CCNA_00003at 2.196 kb on + strand, within CCNA_00003at 2.200 kb on + strand, within CCNA_00003at 2.204 kb on - strand, within CCNA_00003at 2.204 kb on - strand, within CCNA_00003at 2.204 kb on - strand, within CCNA_00003at 2.227 kb on + strand, within CCNA_00003at 2.276 kb on + strand, within CCNA_00003at 2.298 kb on + strand, within CCNA_00003at 2.298 kb on + strand, within CCNA_00003at 2.303 kb on + strand, within CCNA_00003at 2.303 kb on + strand, within CCNA_00003at 2.306 kb on - strand, within CCNA_00003at 2.311 kb on - strand, within CCNA_00003at 2.316 kb on + strand, within CCNA_00003at 2.323 kb on + strand, within CCNA_00003at 2.399 kb on - strand, within CCNA_00003at 2.407 kb on - strand, within CCNA_00003at 2.427 kb on + strand, within CCNA_00003at 2.442 kb on + strand, within CCNA_00003at 2.442 kb on + strand, within CCNA_00003at 2.442 kb on + strand, within CCNA_00003at 2.450 kb on - strand, within CCNA_00003at 2.458 kb on + strand, within CCNA_00003at 2.487 kb on + strandat 2.539 kb on + strandat 2.552 kb on + strandat 3.113 kb on + strandat 3.131 kb on - strandat 3.134 kb on + strandat 3.142 kb on - strandat 3.142 kb on - strandat 3.142 kb on - strandat 3.142 kb on - strandat 3.142 kb on - strandat 3.153 kb on + strandat 3.161 kb on - strandat 3.187 kb on + strandat 3.195 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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705 + CCNA_00001 0.56 -1.1
705 + CCNA_00001 0.56 -1.0
718 - CCNA_00001 0.57 -0.6
738 - CCNA_00001 0.59 -2.1
748 - CCNA_00001 0.60 -1.2
829 - CCNA_00001 0.69 -1.0
1,036 + -1.0
1,036 + -1.3
1,067 - -1.4
1,078 + +0.0
1,079 - +0.5
1,079 - +0.0
1,083 + +1.6
1,083 + +1.1
1,086 - +2.1
1,086 - -1.3
1,091 - -1.5
1,096 + +1.9
1,096 - -0.2
1,104 - -1.1
1,114 + +0.7
1,114 + +1.2
1,114 + +0.5
1,131 + -0.9
1,131 + +0.5
1,155 + +0.8
1,192 + CCNA_00002 0.15 -0.0
1,220 + CCNA_00002 0.19 +2.3
1,248 + CCNA_00002 0.24 +0.2
1,261 + CCNA_00002 0.26 -0.2
1,261 + CCNA_00002 0.26 +0.8
1,292 + CCNA_00002 0.31 -0.1
1,293 + CCNA_00002 0.32 -0.0
1,293 - CCNA_00002 0.32 -1.6
1,300 - CCNA_00002 0.33 -1.6
1,300 - CCNA_00002 0.33 -1.3
1,319 + CCNA_00002 0.36 +0.2
1,324 + CCNA_00002 0.37 -0.0
1,324 + CCNA_00002 0.37 +1.4
1,327 - CCNA_00002 0.37 -1.3
1,329 + CCNA_00002 0.38 -0.2
1,329 + CCNA_00002 0.38 +0.4
1,337 - CCNA_00002 0.39 -0.0
1,337 - CCNA_00002 0.39 +2.4
1,342 + CCNA_00002 0.40 -0.3
1,350 - CCNA_00002 0.41 +0.1
1,364 - CCNA_00002 0.43 +0.0
1,374 + CCNA_00002 0.45 -0.2
1,386 + CCNA_00002 0.47 +0.5
1,399 + CCNA_00002 0.49 -0.2
1,399 + CCNA_00002 0.49 +1.7
1,399 + CCNA_00002 0.49 -0.7
1,399 + CCNA_00002 0.49 +0.7
1,399 + CCNA_00002 0.49 +0.1
1,401 + CCNA_00002 0.49 -0.1
1,407 - CCNA_00002 0.51 -1.3
1,407 - CCNA_00002 0.51 -2.0
1,407 - CCNA_00002 0.51 +0.2
1,407 - CCNA_00002 0.51 -2.0
1,407 - CCNA_00002 0.51 -0.7
1,417 - CCNA_00002 0.52 -0.6
1,428 - CCNA_00002 0.54 -1.5
1,459 + CCNA_00002 0.59 +0.3
1,467 + CCNA_00002 0.60 +0.2
1,486 - CCNA_00002 0.64 -0.1
1,531 + CCNA_00002 0.71 +0.8
1,531 + CCNA_00002 0.71 +0.1
1,531 + CCNA_00002 0.71 +1.6
1,531 + CCNA_00002 0.71 +0.3
1,531 + CCNA_00002 0.71 -0.2
1,534 + CCNA_00002 0.72 -0.1
1,534 + CCNA_00002 0.72 +0.7
1,534 + CCNA_00002 0.72 +0.4
1,534 + CCNA_00002 0.72 -0.4
1,539 - CCNA_00002 0.72 -0.4
1,539 - CCNA_00002 0.72 -0.8
1,542 - CCNA_00002 0.73 -1.6
1,542 - CCNA_00002 0.73 +0.3
1,542 - CCNA_00002 0.73 -0.2
1,542 - CCNA_00002 0.73 -1.2
1,542 - CCNA_00002 0.73 +1.8
1,554 + CCNA_00002 0.75 -0.0
1,554 + CCNA_00002 0.75 +0.2
1,554 + CCNA_00002 0.75 +0.3
1,554 + CCNA_00002 0.75 +0.2
1,554 + CCNA_00002 0.75 -1.0
1,554 + CCNA_00002 0.75 +1.4
1,554 + CCNA_00002 0.75 +1.1
1,559 + CCNA_00002 0.76 +0.6
1,559 + CCNA_00002 0.76 +0.2
1,562 - CCNA_00002 0.76 -0.7
1,562 - CCNA_00002 0.76 -1.2
1,562 - CCNA_00002 0.76 -0.4
1,562 - CCNA_00002 0.76 +0.6
1,567 - CCNA_00002 0.77 -0.8
1,567 - CCNA_00002 0.77 -2.0
1,567 - CCNA_00002 0.77 -0.4
1,576 + CCNA_00002 0.79 -0.4
1,576 + CCNA_00002 0.79 -1.2
1,576 + CCNA_00002 0.79 +0.4
1,581 + CCNA_00002 0.80 -0.4
1,581 + CCNA_00002 0.80 -0.4
1,581 - CCNA_00002 0.80 +0.0
1,589 - CCNA_00002 0.81 +0.7
1,591 - CCNA_00002 0.81 -1.9
1,605 - CCNA_00002 0.83 +0.1
1,610 + CCNA_00002 0.84 +2.2
1,639 + CCNA_00002 0.89 +0.3
1,647 - -0.8
1,663 - -1.0
1,689 + -1.0
1,696 + +1.3
1,697 - -1.2
1,697 - +0.8
1,739 + -0.6
1,739 + -1.7
1,747 - -2.9
1,751 - -3.3
1,768 - -3.0
1,814 - CCNA_00003 0.13 -1.9
1,817 + CCNA_00003 0.14 -3.8
1,849 + CCNA_00003 0.17 -4.2
1,849 + CCNA_00003 0.17 -2.5
1,901 - CCNA_00003 0.23 -1.2
1,905 + CCNA_00003 0.24 -2.9
1,919 + CCNA_00003 0.26 -2.8
1,980 + CCNA_00003 0.33 -3.7
2,039 - CCNA_00003 0.40 -3.6
2,044 - CCNA_00003 0.40 -3.3
2,077 - CCNA_00003 0.44 -3.0
2,161 + CCNA_00003 0.54 +0.0
2,161 + CCNA_00003 0.54 -2.0
2,169 - CCNA_00003 0.55 -1.3
2,169 - CCNA_00003 0.55 -1.0
2,169 - CCNA_00003 0.55 -2.3
2,189 - CCNA_00003 0.57 -2.9
2,196 + CCNA_00003 0.58 -1.5
2,196 + CCNA_00003 0.58 -1.8
2,200 + CCNA_00003 0.58 -2.8
2,204 - CCNA_00003 0.59 -3.3
2,204 - CCNA_00003 0.59 -2.0
2,204 - CCNA_00003 0.59 -2.5
2,227 + CCNA_00003 0.61 -3.4
2,276 + CCNA_00003 0.67 -2.5
2,298 + CCNA_00003 0.70 -2.4
2,298 + CCNA_00003 0.70 -3.4
2,303 + CCNA_00003 0.70 -4.0
2,303 + CCNA_00003 0.70 -1.0
2,306 - CCNA_00003 0.71 +0.0
2,311 - CCNA_00003 0.71 -1.0
2,316 + CCNA_00003 0.72 -1.5
2,323 + CCNA_00003 0.73 -2.1
2,399 - CCNA_00003 0.81 -0.5
2,407 - CCNA_00003 0.82 -4.8
2,427 + CCNA_00003 0.85 -3.7
2,442 + CCNA_00003 0.86 -3.5
2,442 + CCNA_00003 0.86 -2.9
2,442 + CCNA_00003 0.86 -0.9
2,450 - CCNA_00003 0.87 -2.2
2,458 + CCNA_00003 0.88 -2.3
2,487 + +0.0
2,539 + +1.0
2,552 + +0.8
3,113 + -0.7
3,131 - -2.1
3,134 + -0.6
3,142 - +0.0
3,142 - -1.5
3,142 - +0.8
3,142 - -0.7
3,142 - +0.0
3,153 + -0.1
3,161 - -1.3
3,187 + +1.8
3,195 - -1.1

Or see this region's nucleotide sequence