Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16720

Experiment: R2A with Zinc 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS16710 and CA265_RS16715 are separated by 5 nucleotidesCA265_RS16715 and CA265_RS16720 are separated by 94 nucleotidesCA265_RS16720 and CA265_RS16725 are separated by 11 nucleotidesCA265_RS16725 and CA265_RS16730 are separated by 124 nucleotides CA265_RS16710: CA265_RS16710 - molecular chaperone DnaJ, at 4,195,307 to 4,196,200 _RS16710 CA265_RS16715: CA265_RS16715 - hypothetical protein, at 4,196,206 to 4,196,511 _RS16715 CA265_RS16720: CA265_RS16720 - ATPase, at 4,196,606 to 4,198,180 _RS16720 CA265_RS16725: CA265_RS16725 - hypothetical protein, at 4,198,192 to 4,198,479 _RS16725 CA265_RS16730: CA265_RS16730 - nucleotidyltransferase, at 4,198,604 to 4,199,503 _RS16730 Position (kb) 4196 4197 4198 4199Strain fitness (log2 ratio) -2 -1 0 1 2at 4195.608 kb on - strand, within CA265_RS16710at 4195.710 kb on - strand, within CA265_RS16710at 4195.750 kb on + strand, within CA265_RS16710at 4195.751 kb on - strand, within CA265_RS16710at 4195.773 kb on + strand, within CA265_RS16710at 4195.796 kb on - strand, within CA265_RS16710at 4195.796 kb on - strand, within CA265_RS16710at 4195.860 kb on + strand, within CA265_RS16710at 4195.886 kb on + strand, within CA265_RS16710at 4195.887 kb on - strand, within CA265_RS16710at 4195.887 kb on - strand, within CA265_RS16710at 4195.903 kb on + strand, within CA265_RS16710at 4195.943 kb on + strand, within CA265_RS16710at 4195.959 kb on + strand, within CA265_RS16710at 4195.960 kb on - strand, within CA265_RS16710at 4195.965 kb on + strand, within CA265_RS16710at 4195.965 kb on + strand, within CA265_RS16710at 4195.966 kb on - strand, within CA265_RS16710at 4195.966 kb on - strand, within CA265_RS16710at 4195.966 kb on - strand, within CA265_RS16710at 4195.966 kb on - strand, within CA265_RS16710at 4195.966 kb on - strand, within CA265_RS16710at 4195.966 kb on - strand, within CA265_RS16710at 4195.966 kb on - strand, within CA265_RS16710at 4195.970 kb on - strand, within CA265_RS16710at 4195.970 kb on - strand, within CA265_RS16710at 4196.007 kb on + strand, within CA265_RS16710at 4196.118 kb on + strandat 4196.120 kb on + strandat 4196.122 kb on + strandat 4196.122 kb on + strandat 4196.175 kb on + strandat 4196.255 kb on + strand, within CA265_RS16715at 4196.256 kb on - strand, within CA265_RS16715at 4196.262 kb on + strand, within CA265_RS16715at 4196.396 kb on + strand, within CA265_RS16715at 4196.436 kb on - strand, within CA265_RS16715at 4196.505 kb on + strandat 4196.506 kb on - strandat 4196.528 kb on - strandat 4196.594 kb on + strandat 4196.594 kb on + strandat 4196.594 kb on + strandat 4196.659 kb on + strandat 4196.669 kb on + strandat 4196.670 kb on - strandat 4196.726 kb on - strandat 4196.806 kb on - strand, within CA265_RS16720at 4197.037 kb on - strand, within CA265_RS16720at 4197.054 kb on + strand, within CA265_RS16720at 4197.076 kb on + strand, within CA265_RS16720at 4197.129 kb on + strand, within CA265_RS16720at 4197.130 kb on - strand, within CA265_RS16720at 4197.155 kb on + strand, within CA265_RS16720at 4197.193 kb on + strand, within CA265_RS16720at 4197.198 kb on - strand, within CA265_RS16720at 4197.198 kb on - strand, within CA265_RS16720at 4197.198 kb on - strand, within CA265_RS16720at 4197.231 kb on + strand, within CA265_RS16720at 4197.231 kb on + strand, within CA265_RS16720at 4197.232 kb on - strand, within CA265_RS16720at 4197.268 kb on - strand, within CA265_RS16720at 4197.268 kb on - strand, within CA265_RS16720at 4197.274 kb on + strand, within CA265_RS16720at 4197.353 kb on - strand, within CA265_RS16720at 4197.353 kb on - strand, within CA265_RS16720at 4197.378 kb on + strand, within CA265_RS16720at 4197.381 kb on + strand, within CA265_RS16720at 4197.383 kb on + strand, within CA265_RS16720at 4197.388 kb on + strand, within CA265_RS16720at 4197.405 kb on + strand, within CA265_RS16720at 4197.406 kb on - strand, within CA265_RS16720at 4197.418 kb on - strand, within CA265_RS16720at 4197.490 kb on - strand, within CA265_RS16720at 4197.636 kb on + strand, within CA265_RS16720at 4197.648 kb on + strand, within CA265_RS16720at 4197.658 kb on + strand, within CA265_RS16720at 4197.658 kb on + strand, within CA265_RS16720at 4197.658 kb on + strand, within CA265_RS16720at 4197.658 kb on + strand, within CA265_RS16720at 4197.659 kb on - strand, within CA265_RS16720at 4197.698 kb on - strand, within CA265_RS16720at 4197.698 kb on - strand, within CA265_RS16720at 4197.850 kb on + strand, within CA265_RS16720at 4197.850 kb on + strand, within CA265_RS16720at 4197.896 kb on - strand, within CA265_RS16720at 4197.898 kb on + strand, within CA265_RS16720at 4197.898 kb on + strand, within CA265_RS16720at 4197.899 kb on - strand, within CA265_RS16720at 4197.899 kb on - strand, within CA265_RS16720at 4197.903 kb on - strand, within CA265_RS16720at 4197.903 kb on - strand, within CA265_RS16720at 4197.937 kb on + strand, within CA265_RS16720at 4198.034 kb on - strandat 4198.130 kb on - strandat 4198.130 kb on - strandat 4198.179 kb on - strandat 4198.187 kb on + strandat 4198.198 kb on + strandat 4198.199 kb on - strandat 4198.199 kb on - strandat 4198.255 kb on - strand, within CA265_RS16725at 4198.328 kb on + strand, within CA265_RS16725at 4198.329 kb on - strand, within CA265_RS16725at 4198.400 kb on - strand, within CA265_RS16725at 4198.402 kb on - strand, within CA265_RS16725at 4198.407 kb on - strand, within CA265_RS16725at 4198.407 kb on - strand, within CA265_RS16725at 4198.407 kb on - strand, within CA265_RS16725at 4198.407 kb on - strand, within CA265_RS16725at 4198.417 kb on - strand, within CA265_RS16725at 4198.463 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.2 mM
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4,195,608 - CA265_RS16710 0.34 -0.5
4,195,710 - CA265_RS16710 0.45 +0.8
4,195,750 + CA265_RS16710 0.50 +0.1
4,195,751 - CA265_RS16710 0.50 -0.8
4,195,773 + CA265_RS16710 0.52 +1.8
4,195,796 - CA265_RS16710 0.55 -0.1
4,195,796 - CA265_RS16710 0.55 +0.4
4,195,860 + CA265_RS16710 0.62 +1.2
4,195,886 + CA265_RS16710 0.65 +0.7
4,195,887 - CA265_RS16710 0.65 -0.1
4,195,887 - CA265_RS16710 0.65 +0.4
4,195,903 + CA265_RS16710 0.67 +1.6
4,195,943 + CA265_RS16710 0.71 +0.7
4,195,959 + CA265_RS16710 0.73 -1.3
4,195,960 - CA265_RS16710 0.73 +0.3
4,195,965 + CA265_RS16710 0.74 +0.1
4,195,965 + CA265_RS16710 0.74 +0.6
4,195,966 - CA265_RS16710 0.74 -0.6
4,195,966 - CA265_RS16710 0.74 -0.9
4,195,966 - CA265_RS16710 0.74 -0.8
4,195,966 - CA265_RS16710 0.74 +0.6
4,195,966 - CA265_RS16710 0.74 +0.2
4,195,966 - CA265_RS16710 0.74 +0.9
4,195,966 - CA265_RS16710 0.74 +0.7
4,195,970 - CA265_RS16710 0.74 +0.7
4,195,970 - CA265_RS16710 0.74 -0.8
4,196,007 + CA265_RS16710 0.78 +0.2
4,196,118 + +0.1
4,196,120 + +0.6
4,196,122 + +0.1
4,196,122 + -0.6
4,196,175 + +1.1
4,196,255 + CA265_RS16715 0.16 +1.7
4,196,256 - CA265_RS16715 0.16 +0.3
4,196,262 + CA265_RS16715 0.18 +1.5
4,196,396 + CA265_RS16715 0.62 -0.5
4,196,436 - CA265_RS16715 0.75 -0.7
4,196,505 + -0.0
4,196,506 - +0.0
4,196,528 - +0.1
4,196,594 + +0.2
4,196,594 + -0.3
4,196,594 + -0.1
4,196,659 + -0.2
4,196,669 + -0.0
4,196,670 - -0.6
4,196,726 - -0.9
4,196,806 - CA265_RS16720 0.13 +0.3
4,197,037 - CA265_RS16720 0.27 +0.1
4,197,054 + CA265_RS16720 0.28 +0.3
4,197,076 + CA265_RS16720 0.30 -0.1
4,197,129 + CA265_RS16720 0.33 +1.5
4,197,130 - CA265_RS16720 0.33 -1.1
4,197,155 + CA265_RS16720 0.35 +0.8
4,197,193 + CA265_RS16720 0.37 +0.8
4,197,198 - CA265_RS16720 0.38 -1.2
4,197,198 - CA265_RS16720 0.38 -0.9
4,197,198 - CA265_RS16720 0.38 -0.4
4,197,231 + CA265_RS16720 0.40 +0.4
4,197,231 + CA265_RS16720 0.40 -0.2
4,197,232 - CA265_RS16720 0.40 -0.0
4,197,268 - CA265_RS16720 0.42 +0.1
4,197,268 - CA265_RS16720 0.42 +0.9
4,197,274 + CA265_RS16720 0.42 +0.3
4,197,353 - CA265_RS16720 0.47 -0.3
4,197,353 - CA265_RS16720 0.47 -0.5
4,197,378 + CA265_RS16720 0.49 +0.6
4,197,381 + CA265_RS16720 0.49 +0.5
4,197,383 + CA265_RS16720 0.49 +0.7
4,197,388 + CA265_RS16720 0.50 +0.3
4,197,405 + CA265_RS16720 0.51 +0.9
4,197,406 - CA265_RS16720 0.51 +0.2
4,197,418 - CA265_RS16720 0.52 +0.2
4,197,490 - CA265_RS16720 0.56 -0.8
4,197,636 + CA265_RS16720 0.65 +1.3
4,197,648 + CA265_RS16720 0.66 +0.8
4,197,658 + CA265_RS16720 0.67 +0.8
4,197,658 + CA265_RS16720 0.67 +0.6
4,197,658 + CA265_RS16720 0.67 +1.0
4,197,658 + CA265_RS16720 0.67 -0.1
4,197,659 - CA265_RS16720 0.67 -0.2
4,197,698 - CA265_RS16720 0.69 -0.7
4,197,698 - CA265_RS16720 0.69 -1.4
4,197,850 + CA265_RS16720 0.79 -1.6
4,197,850 + CA265_RS16720 0.79 +0.4
4,197,896 - CA265_RS16720 0.82 -1.2
4,197,898 + CA265_RS16720 0.82 +0.5
4,197,898 + CA265_RS16720 0.82 +0.9
4,197,899 - CA265_RS16720 0.82 +0.7
4,197,899 - CA265_RS16720 0.82 +0.3
4,197,903 - CA265_RS16720 0.82 +0.1
4,197,903 - CA265_RS16720 0.82 -0.6
4,197,937 + CA265_RS16720 0.85 +2.5
4,198,034 - +0.4
4,198,130 - -0.9
4,198,130 - -1.1
4,198,179 - -0.2
4,198,187 + +0.6
4,198,198 + -2.2
4,198,199 - +0.2
4,198,199 - -0.3
4,198,255 - CA265_RS16725 0.22 -0.1
4,198,328 + CA265_RS16725 0.47 +2.2
4,198,329 - CA265_RS16725 0.48 -0.1
4,198,400 - CA265_RS16725 0.72 -0.2
4,198,402 - CA265_RS16725 0.73 +0.4
4,198,407 - CA265_RS16725 0.75 +0.1
4,198,407 - CA265_RS16725 0.75 +1.3
4,198,407 - CA265_RS16725 0.75 -1.7
4,198,407 - CA265_RS16725 0.75 -0.5
4,198,417 - CA265_RS16725 0.78 -0.1
4,198,463 - +0.2

Or see this region's nucleotide sequence