Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15950

Experiment: R2A with Zinc 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS15940 and CA265_RS15945 are separated by 8 nucleotidesCA265_RS15945 and CA265_RS15950 are separated by 90 nucleotidesCA265_RS15950 and CA265_RS15955 are separated by 148 nucleotides CA265_RS15940: CA265_RS15940 - DNA-binding response regulator, at 4,002,319 to 4,003,023 _RS15940 CA265_RS15945: CA265_RS15945 - two-component sensor histidine kinase, at 4,003,032 to 4,003,898 _RS15945 CA265_RS15950: CA265_RS15950 - glutamate-1-semialdehyde-2,1-aminomutase, at 4,003,989 to 4,005,359 _RS15950 CA265_RS15955: CA265_RS15955 - delta-aminolevulinic acid dehydratase, at 4,005,508 to 4,006,476 _RS15955 Position (kb) 4003 4004 4005 4006Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4003.038 kb on - strandat 4003.056 kb on - strandat 4003.195 kb on - strand, within CA265_RS15945at 4003.246 kb on - strand, within CA265_RS15945at 4003.273 kb on - strand, within CA265_RS15945at 4003.285 kb on - strand, within CA265_RS15945at 4003.327 kb on - strand, within CA265_RS15945at 4003.443 kb on - strand, within CA265_RS15945at 4003.491 kb on - strand, within CA265_RS15945at 4003.557 kb on - strand, within CA265_RS15945at 4003.859 kb on - strandat 4003.913 kb on + strandat 4003.913 kb on + strandat 4003.990 kb on + strandat 4005.416 kb on - strandat 4005.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.2 mM
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4,003,038 - -1.1
4,003,056 - -1.4
4,003,195 - CA265_RS15945 0.19 +0.7
4,003,246 - CA265_RS15945 0.25 -0.9
4,003,273 - CA265_RS15945 0.28 -1.8
4,003,285 - CA265_RS15945 0.29 -1.6
4,003,327 - CA265_RS15945 0.34 -1.9
4,003,443 - CA265_RS15945 0.47 -2.9
4,003,491 - CA265_RS15945 0.53 -2.2
4,003,557 - CA265_RS15945 0.61 -2.2
4,003,859 - -1.1
4,003,913 + -1.5
4,003,913 + -1.6
4,003,990 + -2.7
4,005,416 - +1.6
4,005,481 - +2.0

Or see this region's nucleotide sequence