Experiment: R2A with Zinc 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS15075 and CA265_RS15080 are separated by 149 nucleotides CA265_RS15080 and CA265_RS15085 are separated by 19 nucleotides CA265_RS15085 and CA265_RS15090 are separated by 2 nucleotides CA265_RS15090 and CA265_RS15095 are separated by 9 nucleotides
CA265_RS15075: CA265_RS15075 - outer membrane protein assembly factor BamA, at 3,798,113 to 3,800,656
_RS15075
CA265_RS15080: CA265_RS15080 - isoprenyl transferase, at 3,800,806 to 3,801,546
_RS15080
CA265_RS15085: CA265_RS15085 - hypothetical protein, at 3,801,566 to 3,802,363
_RS15085
CA265_RS15090: CA265_RS15090 - NAD kinase, at 3,802,366 to 3,803,247
_RS15090
CA265_RS15095: CA265_RS15095 - CBS domain-containing protein, at 3,803,257 to 3,803,919
_RS15095
Position (kb)
3801
3802
3803 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3800.700 kb on - strand at 3800.786 kb on - strand at 3801.552 kb on - strand at 3801.552 kb on - strand at 3801.552 kb on - strand at 3801.598 kb on + strand at 3801.627 kb on + strand at 3801.627 kb on + strand at 3801.628 kb on - strand at 3801.703 kb on + strand, within CA265_RS15085 at 3801.790 kb on + strand, within CA265_RS15085 at 3801.791 kb on - strand, within CA265_RS15085 at 3801.821 kb on - strand, within CA265_RS15085 at 3801.828 kb on + strand, within CA265_RS15085 at 3801.832 kb on + strand, within CA265_RS15085 at 3801.833 kb on - strand, within CA265_RS15085 at 3801.833 kb on - strand, within CA265_RS15085 at 3801.834 kb on + strand, within CA265_RS15085 at 3801.834 kb on + strand, within CA265_RS15085 at 3801.835 kb on - strand, within CA265_RS15085 at 3801.839 kb on - strand, within CA265_RS15085 at 3801.859 kb on + strand, within CA265_RS15085 at 3801.877 kb on + strand, within CA265_RS15085 at 3801.877 kb on + strand, within CA265_RS15085 at 3801.984 kb on + strand, within CA265_RS15085 at 3802.140 kb on + strand, within CA265_RS15085 at 3802.152 kb on - strand, within CA265_RS15085 at 3802.168 kb on - strand, within CA265_RS15085 at 3802.168 kb on - strand, within CA265_RS15085 at 3802.191 kb on + strand, within CA265_RS15085 at 3802.251 kb on + strand, within CA265_RS15085 at 3802.324 kb on + strand at 3802.324 kb on + strand at 3802.328 kb on + strand at 3802.368 kb on - strand at 3802.371 kb on - strand at 3803.261 kb on - strand at 3803.261 kb on - strand at 3803.261 kb on - strand at 3803.328 kb on - strand, within CA265_RS15095 at 3803.352 kb on - strand, within CA265_RS15095
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Zinc 0.2 mM remove 3,800,700 - +0.1 3,800,786 - +0.9 3,801,552 - -1.5 3,801,552 - -1.0 3,801,552 - +0.2 3,801,598 + +0.5 3,801,627 + +1.9 3,801,627 + +1.9 3,801,628 - +3.0 3,801,703 + CA265_RS15085 0.17 +2.1 3,801,790 + CA265_RS15085 0.28 +4.0 3,801,791 - CA265_RS15085 0.28 +3.0 3,801,821 - CA265_RS15085 0.32 +2.3 3,801,828 + CA265_RS15085 0.33 +2.7 3,801,832 + CA265_RS15085 0.33 +1.9 3,801,833 - CA265_RS15085 0.33 +4.0 3,801,833 - CA265_RS15085 0.33 +2.4 3,801,834 + CA265_RS15085 0.34 +2.6 3,801,834 + CA265_RS15085 0.34 +0.9 3,801,835 - CA265_RS15085 0.34 +2.5 3,801,839 - CA265_RS15085 0.34 +1.9 3,801,859 + CA265_RS15085 0.37 +2.6 3,801,877 + CA265_RS15085 0.39 +3.4 3,801,877 + CA265_RS15085 0.39 +1.8 3,801,984 + CA265_RS15085 0.52 +3.8 3,802,140 + CA265_RS15085 0.72 +2.7 3,802,152 - CA265_RS15085 0.73 +3.1 3,802,168 - CA265_RS15085 0.75 +2.5 3,802,168 - CA265_RS15085 0.75 +2.2 3,802,191 + CA265_RS15085 0.78 +2.0 3,802,251 + CA265_RS15085 0.86 +2.7 3,802,324 + +2.4 3,802,324 + +2.2 3,802,328 + +2.4 3,802,368 - +0.7 3,802,371 - -1.6 3,803,261 - -1.1 3,803,261 - +0.1 3,803,261 - +0.3 3,803,328 - CA265_RS15095 0.11 -0.3 3,803,352 - CA265_RS15095 0.14 -1.3
Or see this region's nucleotide sequence