Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15085

Experiment: R2A with Zinc 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS15075 and CA265_RS15080 are separated by 149 nucleotidesCA265_RS15080 and CA265_RS15085 are separated by 19 nucleotidesCA265_RS15085 and CA265_RS15090 are separated by 2 nucleotidesCA265_RS15090 and CA265_RS15095 are separated by 9 nucleotides CA265_RS15075: CA265_RS15075 - outer membrane protein assembly factor BamA, at 3,798,113 to 3,800,656 _RS15075 CA265_RS15080: CA265_RS15080 - isoprenyl transferase, at 3,800,806 to 3,801,546 _RS15080 CA265_RS15085: CA265_RS15085 - hypothetical protein, at 3,801,566 to 3,802,363 _RS15085 CA265_RS15090: CA265_RS15090 - NAD kinase, at 3,802,366 to 3,803,247 _RS15090 CA265_RS15095: CA265_RS15095 - CBS domain-containing protein, at 3,803,257 to 3,803,919 _RS15095 Position (kb) 3801 3802 3803Strain fitness (log2 ratio) -1 0 1 2 3 4at 3800.700 kb on - strandat 3800.786 kb on - strandat 3801.552 kb on - strandat 3801.552 kb on - strandat 3801.552 kb on - strandat 3801.598 kb on + strandat 3801.627 kb on + strandat 3801.627 kb on + strandat 3801.628 kb on - strandat 3801.703 kb on + strand, within CA265_RS15085at 3801.790 kb on + strand, within CA265_RS15085at 3801.791 kb on - strand, within CA265_RS15085at 3801.821 kb on - strand, within CA265_RS15085at 3801.828 kb on + strand, within CA265_RS15085at 3801.832 kb on + strand, within CA265_RS15085at 3801.833 kb on - strand, within CA265_RS15085at 3801.833 kb on - strand, within CA265_RS15085at 3801.834 kb on + strand, within CA265_RS15085at 3801.834 kb on + strand, within CA265_RS15085at 3801.835 kb on - strand, within CA265_RS15085at 3801.839 kb on - strand, within CA265_RS15085at 3801.859 kb on + strand, within CA265_RS15085at 3801.877 kb on + strand, within CA265_RS15085at 3801.877 kb on + strand, within CA265_RS15085at 3801.984 kb on + strand, within CA265_RS15085at 3802.140 kb on + strand, within CA265_RS15085at 3802.152 kb on - strand, within CA265_RS15085at 3802.168 kb on - strand, within CA265_RS15085at 3802.168 kb on - strand, within CA265_RS15085at 3802.191 kb on + strand, within CA265_RS15085at 3802.251 kb on + strand, within CA265_RS15085at 3802.324 kb on + strandat 3802.324 kb on + strandat 3802.328 kb on + strandat 3802.368 kb on - strandat 3802.371 kb on - strandat 3803.261 kb on - strandat 3803.261 kb on - strandat 3803.261 kb on - strandat 3803.328 kb on - strand, within CA265_RS15095at 3803.352 kb on - strand, within CA265_RS15095

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.2 mM
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3,800,700 - +0.1
3,800,786 - +0.9
3,801,552 - -1.5
3,801,552 - -1.0
3,801,552 - +0.2
3,801,598 + +0.5
3,801,627 + +1.9
3,801,627 + +1.9
3,801,628 - +3.0
3,801,703 + CA265_RS15085 0.17 +2.1
3,801,790 + CA265_RS15085 0.28 +4.0
3,801,791 - CA265_RS15085 0.28 +3.0
3,801,821 - CA265_RS15085 0.32 +2.3
3,801,828 + CA265_RS15085 0.33 +2.7
3,801,832 + CA265_RS15085 0.33 +1.9
3,801,833 - CA265_RS15085 0.33 +4.0
3,801,833 - CA265_RS15085 0.33 +2.4
3,801,834 + CA265_RS15085 0.34 +2.6
3,801,834 + CA265_RS15085 0.34 +0.9
3,801,835 - CA265_RS15085 0.34 +2.5
3,801,839 - CA265_RS15085 0.34 +1.9
3,801,859 + CA265_RS15085 0.37 +2.6
3,801,877 + CA265_RS15085 0.39 +3.4
3,801,877 + CA265_RS15085 0.39 +1.8
3,801,984 + CA265_RS15085 0.52 +3.8
3,802,140 + CA265_RS15085 0.72 +2.7
3,802,152 - CA265_RS15085 0.73 +3.1
3,802,168 - CA265_RS15085 0.75 +2.5
3,802,168 - CA265_RS15085 0.75 +2.2
3,802,191 + CA265_RS15085 0.78 +2.0
3,802,251 + CA265_RS15085 0.86 +2.7
3,802,324 + +2.4
3,802,324 + +2.2
3,802,328 + +2.4
3,802,368 - +0.7
3,802,371 - -1.6
3,803,261 - -1.1
3,803,261 - +0.1
3,803,261 - +0.3
3,803,328 - CA265_RS15095 0.11 -0.3
3,803,352 - CA265_RS15095 0.14 -1.3

Or see this region's nucleotide sequence