Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS14750

Experiment: R2A with Zinc 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS14740 and CA265_RS14745 overlap by 1 nucleotidesCA265_RS14745 and CA265_RS14750 overlap by 1 nucleotidesCA265_RS14750 and CA265_RS14755 are separated by 376 nucleotides CA265_RS14740: CA265_RS14740 - biopolymer transporter ExbB, at 3,713,732 to 3,714,436 _RS14740 CA265_RS14745: CA265_RS14745 - biopolymer transporter ExbD, at 3,714,436 to 3,714,837 _RS14745 CA265_RS14750: CA265_RS14750 - energy transducer TonB, at 3,714,837 to 3,715,676 _RS14750 CA265_RS14755: CA265_RS14755 - dihydrofolate synthase, at 3,716,053 to 3,717,342 _RS14755 Position (kb) 3714 3715 3716Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3713.920 kb on - strand, within CA265_RS14740at 3713.920 kb on - strand, within CA265_RS14740at 3713.920 kb on - strand, within CA265_RS14740at 3713.976 kb on - strand, within CA265_RS14740at 3713.976 kb on - strand, within CA265_RS14740at 3713.978 kb on - strand, within CA265_RS14740at 3714.025 kb on + strand, within CA265_RS14740at 3714.149 kb on - strand, within CA265_RS14740at 3714.154 kb on - strand, within CA265_RS14740at 3714.215 kb on - strand, within CA265_RS14740at 3714.217 kb on + strand, within CA265_RS14740at 3714.279 kb on + strand, within CA265_RS14740at 3714.280 kb on - strand, within CA265_RS14740at 3714.281 kb on + strand, within CA265_RS14740at 3714.313 kb on - strand, within CA265_RS14740at 3714.336 kb on + strand, within CA265_RS14740at 3714.336 kb on + strand, within CA265_RS14740at 3714.337 kb on - strand, within CA265_RS14740at 3714.337 kb on - strand, within CA265_RS14740at 3714.337 kb on - strand, within CA265_RS14740at 3714.337 kb on - strand, within CA265_RS14740at 3714.379 kb on + strandat 3714.474 kb on - strandat 3714.477 kb on + strand, within CA265_RS14745at 3714.478 kb on - strand, within CA265_RS14745at 3714.543 kb on - strand, within CA265_RS14745at 3714.615 kb on + strand, within CA265_RS14745at 3714.720 kb on + strand, within CA265_RS14745at 3714.740 kb on + strand, within CA265_RS14745at 3714.741 kb on - strand, within CA265_RS14745at 3714.860 kb on - strandat 3714.879 kb on + strandat 3714.977 kb on - strand, within CA265_RS14750at 3714.989 kb on + strand, within CA265_RS14750at 3714.998 kb on - strand, within CA265_RS14750at 3715.038 kb on - strand, within CA265_RS14750at 3715.038 kb on - strand, within CA265_RS14750at 3715.043 kb on + strand, within CA265_RS14750at 3715.187 kb on - strand, within CA265_RS14750at 3715.263 kb on - strand, within CA265_RS14750at 3715.415 kb on - strand, within CA265_RS14750at 3715.453 kb on + strand, within CA265_RS14750at 3715.453 kb on + strand, within CA265_RS14750at 3715.479 kb on - strand, within CA265_RS14750at 3715.506 kb on - strandat 3715.555 kb on + strand, within CA265_RS14750at 3715.556 kb on - strand, within CA265_RS14750at 3715.721 kb on + strandat 3715.752 kb on + strandat 3715.785 kb on - strandat 3715.785 kb on - strandat 3715.864 kb on + strandat 3715.908 kb on + strandat 3715.908 kb on + strandat 3715.909 kb on - strandat 3715.912 kb on - strandat 3715.920 kb on + strandat 3715.920 kb on + strandat 3715.921 kb on - strandat 3716.018 kb on + strandat 3716.019 kb on - strandat 3716.022 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.2 mM
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3,713,920 - CA265_RS14740 0.27 +2.7
3,713,920 - CA265_RS14740 0.27 +0.7
3,713,920 - CA265_RS14740 0.27 +1.5
3,713,976 - CA265_RS14740 0.35 +1.1
3,713,976 - CA265_RS14740 0.35 +0.5
3,713,978 - CA265_RS14740 0.35 +0.8
3,714,025 + CA265_RS14740 0.42 +0.4
3,714,149 - CA265_RS14740 0.59 +1.1
3,714,154 - CA265_RS14740 0.60 +2.3
3,714,215 - CA265_RS14740 0.69 +1.4
3,714,217 + CA265_RS14740 0.69 +1.3
3,714,279 + CA265_RS14740 0.78 +1.4
3,714,280 - CA265_RS14740 0.78 +1.7
3,714,281 + CA265_RS14740 0.78 +2.3
3,714,313 - CA265_RS14740 0.82 +1.9
3,714,336 + CA265_RS14740 0.86 +1.5
3,714,336 + CA265_RS14740 0.86 +1.1
3,714,337 - CA265_RS14740 0.86 +2.0
3,714,337 - CA265_RS14740 0.86 +2.4
3,714,337 - CA265_RS14740 0.86 +2.4
3,714,337 - CA265_RS14740 0.86 +2.4
3,714,379 + +3.0
3,714,474 - +1.1
3,714,477 + CA265_RS14745 0.10 +1.0
3,714,478 - CA265_RS14745 0.10 +2.5
3,714,543 - CA265_RS14745 0.27 +1.2
3,714,615 + CA265_RS14745 0.45 +2.1
3,714,720 + CA265_RS14745 0.71 -1.1
3,714,740 + CA265_RS14745 0.76 +1.5
3,714,741 - CA265_RS14745 0.76 +2.3
3,714,860 - +0.7
3,714,879 + +2.2
3,714,977 - CA265_RS14750 0.17 +2.8
3,714,989 + CA265_RS14750 0.18 +3.6
3,714,998 - CA265_RS14750 0.19 +1.7
3,715,038 - CA265_RS14750 0.24 +1.2
3,715,038 - CA265_RS14750 0.24 -0.4
3,715,043 + CA265_RS14750 0.25 +2.6
3,715,187 - CA265_RS14750 0.42 +1.8
3,715,263 - CA265_RS14750 0.51 +2.1
3,715,415 - CA265_RS14750 0.69 +1.6
3,715,453 + CA265_RS14750 0.73 +2.0
3,715,453 + CA265_RS14750 0.73 +2.5
3,715,479 - CA265_RS14750 0.76 +1.3
3,715,506 - +1.7
3,715,555 + CA265_RS14750 0.85 +2.4
3,715,556 - CA265_RS14750 0.86 +1.9
3,715,721 + +0.1
3,715,752 + +0.1
3,715,785 - -0.1
3,715,785 - -1.3
3,715,864 + -0.3
3,715,908 + -2.4
3,715,908 + -0.6
3,715,909 - -0.1
3,715,912 - -0.6
3,715,920 + +0.2
3,715,920 + +1.9
3,715,921 - +0.1
3,716,018 + -0.5
3,716,019 - +0.5
3,716,022 - +0.5

Or see this region's nucleotide sequence